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Volumn 16, Issue 1, 2015, Pages

Identifying new sex-linked genes through BAC sequencing in the dioecious plant Silene latifolia

Author keywords

BAC; Gene loss; Plant; RNA seq; Sex chromosomes; Sex linked genes; Silene latifolia; Silene vulgaris; Y degeneration

Indexed keywords

ARTICLE; BACTERIAL ARTIFICIAL CHROMOSOME; CLONE; CONTROLLED STUDY; FLOWER; GENE EXPRESSION; GENE IDENTIFICATION; GENE LOCATION; GENE LOSS; GENE SEQUENCE; GENOME SIZE; HEMIZYGOSITY; NONHUMAN; PLANT GENE; PLANT GENOME; RNA SEQUENCE; SEQUENCE HOMOLOGY; SILENE; SILENE LATIFOLIA; SILENE VULGARIS; SPECIES DIFFERENTIATION; X CHROMOSOME; Y CHROMOSOME; GENE EXPRESSION REGULATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; MOLECULAR EVOLUTION; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PLANT CHROMOSOME; SEX CHROMOSOME; SEX DETERMINATION PROCESS;

EID: 84938925678     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/s12864-015-1698-7     Document Type: Article
Times cited : (18)

References (32)
  • 3
    • 19944364504 scopus 로고    scopus 로고
    • Isolation of genes from plant Y chromosomes
    • Filatov DA. Isolation of genes from plant Y chromosomes. Methods Enzymol. 2005;395:418-42.
    • (2005) Methods Enzymol , vol.395 , pp. 418-442
    • Filatov, D.A.1
  • 4
    • 34248998839 scopus 로고    scopus 로고
    • Evolutionary strata on the X chromosomes of the dioecious plant Silene latifolia: evidence from new sex-linked genes
    • Bergero R, Forrest A, Kamau E, Charlesworth D. Evolutionary strata on the X chromosomes of the dioecious plant Silene latifolia: evidence from new sex-linked genes. Genetics. 2007;175(4):1945-54.
    • (2007) Genetics , vol.175 , Issue.4 , pp. 1945-1954
    • Bergero, R.1    Forrest, A.2    Kamau, E.3    Charlesworth, D.4
  • 5
    • 84879750240 scopus 로고    scopus 로고
    • Expansion of the pseudo-autosomal region and ongoing recombination suppression in the Silene latifolia sex chromosomes
    • Bergero R, Qiu S, Forrest A, Borthwick H, Charlesworth D. Expansion of the pseudo-autosomal region and ongoing recombination suppression in the Silene latifolia sex chromosomes. Genetics. 2013;194(3):673-86.
    • (2013) Genetics , vol.194 , Issue.3 , pp. 673-686
    • Bergero, R.1    Qiu, S.2    Forrest, A.3    Borthwick, H.4    Charlesworth, D.5
  • 6
    • 80052816495 scopus 로고    scopus 로고
    • Preservation of the Y transcriptome in a 10-million-year-old plant sex chromosome system
    • Bergero R, Charlesworth D. Preservation of the Y transcriptome in a 10-million-year-old plant sex chromosome system. Curr Biol. 2011;21(17):1470-4.
    • (2011) Curr Biol , vol.21 , Issue.17 , pp. 1470-1474
    • Bergero, R.1    Charlesworth, D.2
  • 7
    • 80052789023 scopus 로고    scopus 로고
    • Plant Y chromosome degeneration is retarded by haploid purifying selection
    • Chibalina MV, Filatov DA. Plant Y chromosome degeneration is retarded by haploid purifying selection. Curr Biol. 2011;21(17):1475-9.
    • (2011) Curr Biol , vol.21 , Issue.17 , pp. 1475-1479
    • Chibalina, M.V.1    Filatov, D.A.2
  • 8
    • 84859942948 scopus 로고    scopus 로고
    • Rapid de novo evolution of X chromosome dosage compensation in Silene latifolia, a plant with young sex chromosomes
    • Muyle A, Zemp N, Deschamps C, Mousset S, Widmer A, Marais G. Rapid de novo evolution of X chromosome dosage compensation in Silene latifolia, a plant with young sex chromosomes. PLoS Biol. 2012;10(4), e1001308.
    • (2012) PLoS Biol. , vol.10 , Issue.4
    • Muyle, A.1    Zemp, N.2    Deschamps, C.3    Mousset, S.4    Widmer, A.5    Marais, G.6
  • 9
    • 84856420280 scopus 로고    scopus 로고
    • De novo transcriptome assembly and polymorphism detection in the flowering plant Silene vulgaris (Caryophyllaceae)
    • Sloan DB, Keller SR, Berardi AE, Sanderson BJ, Karpovich JF, Taylor DR. De novo transcriptome assembly and polymorphism detection in the flowering plant Silene vulgaris (Caryophyllaceae). Mol Ecol Resour. 2012;12(2):333-43.
    • (2012) Mol Ecol Resour , vol.12 , Issue.2 , pp. 333-343
    • Sloan, D.B.1    Keller, S.R.2    Berardi, A.E.3    Sanderson, B.J.4    Karpovich, J.F.5    Taylor, D.R.6
  • 10
    • 77950400939 scopus 로고    scopus 로고
    • Analysis of BAC clones containing homologous sequences on the end of the Xq arm and on chromosome 7 in the dioecious plant Silene latifolia
    • Ishii K, Amanai Y, Kazama Y, Ikeda M, Kamada H, Kawano S. Analysis of BAC clones containing homologous sequences on the end of the Xq arm and on chromosome 7 in the dioecious plant Silene latifolia. Genome. 2010;53(4):311-20.
    • (2010) Genome , vol.53 , Issue.4 , pp. 311-320
    • Ishii, K.1    Amanai, Y.2    Kazama, Y.3    Ikeda, M.4    Kamada, H.5    Kawano, S.6
  • 11
    • 84861945683 scopus 로고    scopus 로고
    • Comparative analysis of a plant pseudoautosomal region (PAR) in Silene latifolia with the corresponding S. vulgaris autosome
    • Blavet N, Blavet H, Cegan R, Zemp N, Zdanska J, Janousek B, et al. Comparative analysis of a plant pseudoautosomal region (PAR) in Silene latifolia with the corresponding S. vulgaris autosome. BMC Genomics. 2012;13:226.
    • (2012) BMC Genomics , vol.13 , pp. 226
    • Blavet, N.1    Blavet, H.2    Cegan, R.3    Zemp, N.4    Zdanska, J.5    Janousek, B.6
  • 12
    • 22144479069 scopus 로고    scopus 로고
    • Evolutionary history of Silene latifolia sex chromosomes revealed by genetic mapping of four genes
    • Filatov DA. Evolutionary history of Silene latifolia sex chromosomes revealed by genetic mapping of four genes. Genetics. 2005;170(2):975-9.
    • (2005) Genetics , vol.170 , Issue.2 , pp. 975-979
    • Filatov, D.A.1
  • 13
    • 45849098754 scopus 로고    scopus 로고
    • Defining regions and rearrangements of the Silene latifolia Y chromosome
    • Bergero R, Charlesworth D, Filatov DA, Moore RC. Defining regions and rearrangements of the Silene latifolia Y chromosome. Genetics. 2008;178(4):2045-53.
    • (2008) Genetics , vol.178 , Issue.4 , pp. 2045-2053
    • Bergero, R.1    Charlesworth, D.2    Filatov, D.A.3    Moore, R.C.4
  • 14
    • 0242318315 scopus 로고    scopus 로고
    • An Ac-like transposable element family with transcriptionally active Y-linked copies in the white campion Silene latifolia
    • Pritham EJ, Zhang YH, Feschotte C, Kesseli RV. An. Ac-like transposable element family with transcriptionally active Y-linked copies in the white campion Silene latifolia. Genetics. 2003;165(2):799-807.
    • (2003) Genetics. , vol.165 , Issue.2 , pp. 799-807
    • Pritham, E.J.1    Zhang, Y.H.2    Feschotte, C.3    Kesseli, R.V.4
  • 15
    • 33747888424 scopus 로고    scopus 로고
    • An accumulation of tandem DNA repeats on the Y chromosome in Silene latifolia during early stages of sex chromosome evolution
    • Hobza R, Lengerova M, Svoboda J, Kubekova H, Kejnovsky E, Vyskot B. An accumulation of tandem DNA repeats on the Y chromosome in Silene latifolia during early stages of sex chromosome evolution. Chromosoma. 2006;115(5):376-82.
    • (2006) Chromosoma , vol.115 , Issue.5 , pp. 376-382
    • Hobza, R.1    Lengerova, M.2    Svoboda, J.3    Kubekova, H.4    Kejnovsky, E.5    Vyskot, B.6
  • 16
    • 33747891374 scopus 로고    scopus 로고
    • Accumulation of chloroplast DNA sequences on the Y chromosome of Silene latifolia
    • Kejnovsky E, Kubat Z, Hobza R, Lengerova M, Sato S, Tabata S, et al. Accumulation of chloroplast DNA sequences on the Y chromosome of Silene latifolia. Genetica. 2006;128(1-3):167-75.
    • (2006) Genetica , vol.128 , Issue.1-3 , pp. 167-175
    • Kejnovsky, E.1    Kubat, Z.2    Hobza, R.3    Lengerova, M.4    Sato, S.5    Tabata, S.6
  • 17
    • 36048964885 scopus 로고    scopus 로고
    • The role of chromosomal rearrangements in the evolution of Silene latifolia sex chromosomes
    • Hobza R, Kejnovsky E, Vyskot B, Widmer A. The role of chromosomal rearrangements in the evolution of Silene latifolia sex chromosomes. Mol Genet Genomics. 2007;278(6):633-8.
    • (2007) Mol Genet Genomics , vol.278 , Issue.6 , pp. 633-638
    • Hobza, R.1    Kejnovsky, E.2    Vyskot, B.3    Widmer, A.4
  • 18
    • 55149110544 scopus 로고    scopus 로고
    • Survey of repetitive sequences in Silene latifolia with respect to their distribution on sex chromosomes
    • Cermak T, Kubat Z, Hobza R, Koblizkova A, Widmer A, Macas J, et al. Survey of repetitive sequences in Silene latifolia with respect to their distribution on sex chromosomes. Chromosome Res. 2008;16(7):961-76.
    • (2008) Chromosome Res , vol.16 , Issue.7 , pp. 961-976
    • Cermak, T.1    Kubat, Z.2    Hobza, R.3    Koblizkova, A.4    Widmer, A.5    Macas, J.6
  • 19
    • 40849105280 scopus 로고    scopus 로고
    • Active miniature transposons from a plant genome and its non-recombining Y chromosome
    • Bergero R, Forrest A, Charlesworth D. Active. miniature transposons from a plant genome and its non-recombining Y chromosome. Genetics. 2008;178(2):1085-92.
    • (2008) Genetics. , vol.178 , Issue.2 , pp. 1085-1092
    • Bergero, R.1    Forrest, A.2    Charlesworth, D.3
  • 20
    • 80655139062 scopus 로고    scopus 로고
    • Next generation sequencing-based analysis of repetitive DNA in the model dioecious plant Silene latifolia
    • Macas J, Kejnovsky E, Neumann P, Novak P, Koblizkova A, Vyskot B. Next generation sequencing-based analysis of repetitive DNA in the model dioecious plant Silene latifolia. PLoS ONE. 2011;6(11), e27335.
    • (2011) PLoS ONE , vol.6 , Issue.11
    • Macas, J.1    Kejnovsky, E.2    Neumann, P.3    Novak, P.4    Koblizkova, A.5    Vyskot, B.6
  • 21
    • 84891051368 scopus 로고    scopus 로고
    • Strong Accumulation of Chloroplast DNA in the Y Chromosomes of Rumex acetosa and Silene latifolia
    • Steflova P, Hobza R, Vyskot B, Kejnovsky E. Strong. Accumulation of Chloroplast DNA in the Y Chromosomes of Rumex acetosa and Silene latifolia. Cytogenet Genome Res. 2013; 142(1):59-65.
    • (2013) Cytogenet Genome Res. , vol.142 , Issue.1 , pp. 59-65
    • Steflova, P.1    Hobza, R.2    Vyskot, B.3    Kejnovsky, E.4
  • 23
    • 33751340811 scopus 로고    scopus 로고
    • Selective trade-offs and sex-chromosome evolution in Silene latifolia
    • Scotti I, Delph LF. Selective trade-offs and sex-chromosome evolution in Silene latifolia. Evolution. 2006;60(9):1793-800.
    • (2006) Evolution , vol.60 , Issue.9 , pp. 1793-1800
    • Scotti, I.1    Delph, L.F.2
  • 24
    • 0028050776 scopus 로고
    • Cytological analysis in Melandrium album: genome size, chromosome size and fluorescence in situ hybridization
    • Matsunaga S, Hizume M, Kawano S, Kuroiwa T. Cytological analysis in Melandrium album: genome size, chromosome size and fluorescence in situ hybridization. Cytologia. 1994;59:135-41.
    • (1994) Cytologia , vol.59 , pp. 135-141
    • Matsunaga, S.1    Hizume, M.2    Kawano, S.3    Kuroiwa, T.4
  • 25
    • 84899473294 scopus 로고    scopus 로고
    • Mammalian Y chromosomes retain widely expressed dosage-sensitive regulators
    • Bellott DW, Hughes JF, Skaletsky H, Brown LG, Pyntikova T, Cho TJ, et al. Mammalian Y chromosomes retain widely expressed dosage-sensitive regulators. Nature. 2014;508(7497):494-9.
    • (2014) Nature , vol.508 , Issue.7497 , pp. 494-499
    • Bellott, D.W.1    Hughes, J.F.2    Skaletsky, H.3    Brown, L.G.4    Pyntikova, T.5    Cho, T.J.6
  • 27
    • 0032554935 scopus 로고    scopus 로고
    • An X-linked gene with a degenerate Y-linked homologue in a dioecious plant
    • Guttman DS, Charlesworth D. An X-linked gene with a degenerate Y-linked homologue in a dioecious plant. Nature. 1998;393(6682):263-6.
    • (1998) Nature , vol.393 , Issue.6682 , pp. 263-266
    • Guttman, D.S.1    Charlesworth, D.2
  • 31
    • 84876266928 scopus 로고    scopus 로고
    • QUAST: quality assessment tool for genome assemblies
    • Gurevich A, Saveliev V, Vyahhi N, Tesler G. QUAST: quality assessment tool for genome assemblies. Bioinformatics. 2013;29(8):1072-5.
    • (2013) Bioinformatics , vol.29 , Issue.8 , pp. 1072-1075
    • Gurevich, A.1    Saveliev, V.2    Vyahhi, N.3    Tesler, G.4
  • 32
    • 77956193448 scopus 로고    scopus 로고
    • progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement
    • Darling AE, Mau B, Perna NT. progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement. PLoS ONE. 2010;5(6), e11147.
    • (2010) PLoS ONE , vol.5 , Issue.6
    • Darling, A.E.1    Mau, B.2    Perna, N.T.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.