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Volumn 15, Issue 1, 2015, Pages

MicroRNAs and targets in senescent litchi fruit during ambient storage and post-cold storage shelf life

Author keywords

Litchi chinensis; MicroRNAs; Senescence; Storage; Targets

Indexed keywords

MICRORNA;

EID: 84938914745     PISSN: None     EISSN: 14712229     Source Type: Journal    
DOI: 10.1186/s12870-015-0509-2     Document Type: Article
Times cited : (42)

References (55)
  • 1
    • 33744820298 scopus 로고    scopus 로고
    • Ascorbic acid and mineral composition of longan (Dimocarpus longan), lychee (Litchi chinensis) and rambuan (Nephelium lappaceum) cultivars grown in Hawaii
    • Wall MM. Ascorbic acid and mineral composition of longan (Dimocarpus longan), lychee (Litchi chinensis) and rambuan (Nephelium lappaceum) cultivars grown in Hawaii. J Food Compos Anal. 2006;19(6-7):655-63.
    • (2006) J Food Compos Anal , vol.19 , Issue.6-7 , pp. 655-663
    • Wall, M.M.1
  • 2
    • 3242793283 scopus 로고    scopus 로고
    • Advances in understanding of enzymatic browning in harvested litchi fruit
    • Jiang YM, Duan XW, Joyce D, Zhang ZQ, Li JR. Advances in understanding of enzymatic browning in harvested litchi fruit. Food Chem. 2004;88(3):443-6.
    • (2004) Food Chem , vol.88 , Issue.3 , pp. 443-446
    • Jiang, Y.M.1    Duan, X.W.2    Joyce, D.3    Zhang, Z.Q.4    Li, J.R.5
  • 3
    • 79955626693 scopus 로고    scopus 로고
    • High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation
    • Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, et al. High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell. 2011;23(3):873-94.
    • (2011) Plant Cell , vol.23 , Issue.3 , pp. 873-894
    • Breeze, E.1    Harrison, E.2    McHattie, S.3    Hughes, L.4    Hickman, R.5    Hill, C.6
  • 4
    • 84881051455 scopus 로고    scopus 로고
    • Towards systems biological understanding of leaf senescence
    • Guo Y. Towards systems biological understanding of leaf senescence. Plant Mol Biol. 2013;82(6):519-28.
    • (2013) Plant Mol Biol , vol.82 , Issue.6 , pp. 519-528
    • Guo, Y.1
  • 6
    • 0037239022 scopus 로고    scopus 로고
    • Metabolic signalling and carbon partitioning: role of Snf1-related (SnRK1) protein kinase
    • Halford NG, Hey S, Jhurreea D, Laurie S, McKibbin RS, Paul M, et al. Metabolic signalling and carbon partitioning: role of Snf1-related (SnRK1) protein kinase. J Exp Bot. 2003;54(382):467-75.
    • (2003) J Exp Bot , vol.54 , Issue.382 , pp. 467-475
    • Halford, N.G.1    Hey, S.2    Jhurreea, D.3    Laurie, S.4    McKibbin, R.S.5    Paul, M.6
  • 7
    • 49349103897 scopus 로고    scopus 로고
    • Sucrose non-fermenting 1-related protein kinase 2 (SnRK2): a family of protein kinases involved in hyperosmotic stress signaling
    • Shukla V, Mattoo AK. Sucrose non-fermenting 1-related protein kinase 2 (SnRK2): a family of protein kinases involved in hyperosmotic stress signaling. Physiol Mol Biol Plants. 2008;14(1-2):91-100.
    • (2008) Physiol Mol Biol Plants , vol.14 , Issue.1-2 , pp. 91-100
    • Shukla, V.1    Mattoo, A.K.2
  • 8
    • 0029729046 scopus 로고    scopus 로고
    • Induction of defense-related ultrastructural modifications in pea root tissues inoculated with endophytic bacteria
    • Benhamou N, Kloepper JW, Quadt-Hallman A, Tuzun S. Induction of defense-related ultrastructural modifications in pea root tissues inoculated with endophytic bacteria. Plant Physiol. 1996;112(3):919-29.
    • (1996) Plant Physiol , vol.112 , Issue.3 , pp. 919-929
    • Benhamou, N.1    Kloepper, J.W.2    Quadt-Hallman, A.3    Tuzun, S.4
  • 9
    • 58449091869 scopus 로고    scopus 로고
    • Transcriptional regulatory networks in response to abiotic stresses in Arabidopsis and grasses
    • Nakashima K, Ito Y, Yamaguchi-Shinozaki K. Transcriptional regulatory networks in response to abiotic stresses in Arabidopsis and grasses. Plant Physiol. 2009;149(1):88-95.
    • (2009) Plant Physiol , vol.149 , Issue.1 , pp. 88-95
    • Nakashima, K.1    Ito, Y.2    Yamaguchi-Shinozaki, K.3
  • 10
    • 74549224362 scopus 로고    scopus 로고
    • Plant developmental responses to the environment: eco-devo insights
    • Sultan SE. Plant developmental responses to the environment: eco-devo insights. Curr Opin Plant Biol. 2010;13(1):96-101.
    • (2010) Curr Opin Plant Biol , vol.13 , Issue.1 , pp. 96-101
    • Sultan, S.E.1
  • 12
    • 60249087590 scopus 로고    scopus 로고
    • Ectopic expression of VlmybA1 in grapevine activates a narrow set of genes involved in anthocyanin synthesis and transport
    • Cutanda-Perez MC, Ageorges A, Gomez C, Vialet S, Terrier N, Romieu C, et al. Ectopic expression of VlmybA1 in grapevine activates a narrow set of genes involved in anthocyanin synthesis and transport. Plant Mol Biol. 2009;69(6):633-48.
    • (2009) Plant Mol Biol , vol.69 , Issue.6 , pp. 633-648
    • Cutanda-Perez, M.C.1    Ageorges, A.2    Gomez, C.3    Vialet, S.4    Terrier, N.5    Romieu, C.6
  • 13
    • 71049122738 scopus 로고    scopus 로고
    • DkMyb4 is a myb transcription factor involved in proanthocyanidin biosynthesis in persimmon fruit
    • Akagi T, Ikegami A, Tsujimoto T, Kobayashi S, Sato A, Kono A, et al. DkMyb4 is a myb transcription factor involved in proanthocyanidin biosynthesis in persimmon fruit. Plant Physiol. 2009;151(4):2028-45.
    • (2009) Plant Physiol , vol.151 , Issue.4 , pp. 2028-2045
    • Akagi, T.1    Ikegami, A.2    Tsujimoto, T.3    Kobayashi, S.4    Sato, A.5    Kono, A.6
  • 14
    • 77956692405 scopus 로고    scopus 로고
    • DkMyb2 wound-induced transcription factor of persimmon (Diospyros kaki Thunb.), contributes to proanthocyanidin regulation
    • Akagi T, Ikegami A, Yonemori K. DkMyb2 wound-induced transcription factor of persimmon (Diospyros kaki Thunb.), contributes to proanthocyanidin regulation. Planta. 2010;232(5):1045-59.
    • (2010) Planta , vol.232 , Issue.5 , pp. 1045-1059
    • Akagi, T.1    Ikegami, A.2    Yonemori, K.3
  • 15
    • 77950537416 scopus 로고    scopus 로고
    • Coordinated regulation of anthocyanin biosynthesis in Chinese bayberry (Myrica rubra) fruit by a R2R3 MYB transcription factor
    • Niu SS, Xu CJ, Zhang WS, Zhang B, Li X, Lin-Wang K, et al. Coordinated regulation of anthocyanin biosynthesis in Chinese bayberry (Myrica rubra) fruit by a R2R3 MYB transcription factor. Planta. 2010;231(4):887-99.
    • (2010) Planta , vol.231 , Issue.4 , pp. 887-899
    • Niu, S.S.1    Xu, C.J.2    Zhang, W.S.3    Zhang, B.4    Li, X.5    Lin-Wang, K.6
  • 16
    • 0033994357 scopus 로고    scopus 로고
    • Role of anthocyanins, polyphenol oxidase and phenols in lychee pericarp browning
    • Jiang YM. Role of anthocyanins, polyphenol oxidase and phenols in lychee pericarp browning. J Sci Food Agr. 2000;80(3):305-10.
    • (2000) J Sci Food Agr , vol.80 , Issue.3 , pp. 305-310
    • Jiang, Y.M.1
  • 17
    • 0034827644 scopus 로고    scopus 로고
    • Role of anthocyanin degradation in litchi pericarp browning
    • Zhang ZQ, Pang XQ, Ji ZL, Jiang YM. Role of anthocyanin degradation in litchi pericarp browning. Food Chem. 2001;75(2):217-21.
    • (2001) Food Chem , vol.75 , Issue.2 , pp. 217-221
    • Zhang, Z.Q.1    Pang, X.Q.2    Ji, Z.L.3    Jiang, Y.M.4
  • 18
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: genomics, biogenesis, mechanism, and function
    • Bartel DP. MicroRNAs: genomics, biogenesis, mechanism, and function. Cell. 2004;116(2):281-97.
    • (2004) Cell , vol.116 , Issue.2 , pp. 281-297
    • Bartel, D.P.1
  • 19
    • 70350227275 scopus 로고    scopus 로고
    • Small RNAs and their roles in plant development
    • Chen X. Small RNAs and their roles in plant development. Annu Rev Cell Dev Biol. 2009;25(1):21-44.
    • (2009) Annu Rev Cell Dev Biol , vol.25 , Issue.1 , pp. 21-44
    • Chen, X.1
  • 20
    • 84883212289 scopus 로고    scopus 로고
    • Identification of microRNA targets in tomato fruit development using high-throughput sequencing and degradome analysis
    • Karlova R, van Haarst JC, Maliepaard C, van de Geest H, Bovy AG, Lammers M, et al. Identification of microRNA targets in tomato fruit development using high-throughput sequencing and degradome analysis. J Exp Bot. 2013;64(7):1863-78.
    • (2013) J Exp Bot , vol.64 , Issue.7 , pp. 1863-1878
    • Karlova, R.1    Haarst, J.C.2    Maliepaard, C.3    Geest, H.4    Bovy, A.G.5    Lammers, M.6
  • 23
    • 0037144457 scopus 로고    scopus 로고
    • Cleavage of scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA
    • Llave C, Xie ZX, Kasschau KD, Carrington JC. Cleavage of scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA. Science. 2002;297(5589):2053-6.
    • (2002) Science , vol.297 , Issue.5589 , pp. 2053-2056
    • Llave, C.1    Xie, Z.X.2    Kasschau, K.D.3    Carrington, J.C.4
  • 24
    • 84865605458 scopus 로고    scopus 로고
    • Small RNAs in development - insights from plants
    • Chen X. Small RNAs in development - insights from plants. Curr Opin Genet Dev. 2012;22(4):361-7.
    • (2012) Curr Opin Genet Dev , vol.22 , Issue.4 , pp. 361-367
    • Chen, X.1
  • 25
    • 60749101298 scopus 로고    scopus 로고
    • Trifurcate feed-forward regulation of age-dependent cell death involving miR164 in Arabidopsis
    • Kim JH, Woo HR, Kim J, Lim PO, Lee IC, Choi SH, et al. Trifurcate feed-forward regulation of age-dependent cell death involving miR164 in Arabidopsis. Science. 2009;323(5917):1053-7.
    • (2009) Science , vol.323 , Issue.5917 , pp. 1053-1057
    • Kim, J.H.1    Woo, H.R.2    Kim, J.3    Lim, P.O.4    Lee, I.C.5    Choi, S.H.6
  • 26
    • 27744526218 scopus 로고    scopus 로고
    • AUXIN RESPONSE FACTOR1 and AUXIN RESPONSE FACTOR2 regulate senescence and floral organ abscission in Arabidopsis thaliana
    • Ellis CM, Nagpal P, Young JC, Hagen G, Guilfoyle TJ, Reed JW. AUXIN RESPONSE FACTOR1 and AUXIN RESPONSE FACTOR2 regulate senescence and floral organ abscission in Arabidopsis thaliana. Development. 2005;132(20):4563-74.
    • (2005) Development , vol.132 , Issue.20 , pp. 4563-4574
    • Ellis, C.M.1    Nagpal, P.2    Young, J.C.3    Hagen, G.4    Guilfoyle, T.J.5    Reed, J.W.6
  • 28
    • 76049118057 scopus 로고    scopus 로고
    • miR319a targeting of TCP4 is critical for petal growth and development in Arabidopsis
    • 22534-9
    • Nag A, King S, Jack T. miR319a targeting of TCP4 is critical for petal growth and development in Arabidopsis. Proc Natl Acad Sci U S A. 2009;106(52):22534-9.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , Issue.52
    • Nag, A.1    King, S.2    Jack, T.3
  • 30
    • 84926359999 scopus 로고    scopus 로고
    • MicroRNA profiling analysis throughout tomato fruit development and ripening reveals potential regulatory role of RIN on microRNAs accumulation
    • Gao C, Ju Z, Cao D, Zhai B, Qin G, Zhu H, et al. MicroRNA profiling analysis throughout tomato fruit development and ripening reveals potential regulatory role of RIN on microRNAs accumulation. Plant Biotechnol J. 2014;13(3):370-82.
    • (2014) Plant Biotechnol J , vol.13 , Issue.3 , pp. 370-382
    • Gao, C.1    Ju, Z.2    Cao, D.3    Zhai, B.4    Qin, G.5    Zhu, H.6
  • 32
    • 84874953050 scopus 로고    scopus 로고
    • Global identification of miRNAs and targets in Populus euphratica under salt stress
    • Li B, Duan H, Li J, Deng XW, Yin W, Xia X. Global identification of miRNAs and targets in Populus euphratica under salt stress. Plant Mol Biol. 2013;81(6):525-39.
    • (2013) Plant Mol Biol , vol.81 , Issue.6 , pp. 525-539
    • Li, B.1    Duan, H.2    Li, J.3    Deng, X.W.4    Yin, W.5    Xia, X.6
  • 37
    • 79251606862 scopus 로고    scopus 로고
    • Cold storage duration affects litchi fruit quality, membrane permeability, enzyme activities and energy charge during shelf time at ambient temperature
    • Liu H, Song LL, You YL, Li YB, Duan XW, Jiang YM, et al. Cold storage duration affects litchi fruit quality, membrane permeability, enzyme activities and energy charge during shelf time at ambient temperature. Postharvest Biol Technol. 2011;60(1):24-30.
    • (2011) Postharvest Biol Technol , vol.60 , Issue.1 , pp. 24-30
    • Liu, H.1    Song, L.L.2    You, Y.L.3    Li, Y.B.4    Duan, X.W.5    Jiang, Y.M.6
  • 40
    • 84905453362 scopus 로고    scopus 로고
    • Molecular programme of senescence in dry and fleshy fruits
    • Gomez MD, Vera-Sirera F, Perez-Amador MA. Molecular programme of senescence in dry and fleshy fruits. J Exp Bot. 2014;65(16):4515-26.
    • (2014) J Exp Bot , vol.65 , Issue.16 , pp. 4515-4526
    • Gomez, M.D.1    Vera-Sirera, F.2    Perez-Amador, M.A.3
  • 41
    • 27044431652 scopus 로고
    • Kinetic comparison of cytokinin nucleosidase activity isolated from normally ripening and mutant tomato varieties
    • Rolle RS, Chism GW. Kinetic comparison of cytokinin nucleosidase activity isolated from normally ripening and mutant tomato varieties. Plant Physiol. 1989;91(1):148-50.
    • (1989) Plant Physiol , vol.91 , Issue.1 , pp. 148-150
    • Rolle, R.S.1    Chism, G.W.2
  • 43
    • 44649093878 scopus 로고    scopus 로고
    • Ethylene-regulated transcription and crosstalk with jasmonic acid
    • Shinshi H. Ethylene-regulated transcription and crosstalk with jasmonic acid. Plant Sci. 2008;175(1-2):18-23.
    • (2008) Plant Sci , vol.175 , Issue.1-2 , pp. 18-23
    • Shinshi, H.1
  • 44
    • 79952043362 scopus 로고    scopus 로고
    • Two GCC boxes and AP2/ERF-domain transcription factor ORA59 in jasmonate/ethylene-mediated activation of the PDF1.2 promoter in Arabidopsis
    • Zarei A, Korbes AP, Younessi P, Montiel G, Champion A, Memelink J. Two GCC boxes and AP2/ERF-domain transcription factor ORA59 in jasmonate/ethylene-mediated activation of the PDF1.2 promoter in Arabidopsis. Plant Mol Biol. 2011;75(4-5):321-31.
    • (2011) Plant Mol Biol , vol.75 , Issue.4-5 , pp. 321-331
    • Zarei, A.1    Korbes, A.P.2    Younessi, P.3    Montiel, G.4    Champion, A.5    Memelink, J.6
  • 46
    • 33644655130 scopus 로고    scopus 로고
    • Repressor- and activator-type ethylene response factors functioning in jasmonate signaling and disease resistance identified via a genome-wide screen of Arabidopsis transcription factor gene expression
    • McGrath KC, Dombrecht B, Manners JM, Schenk PM, Edgar CI, Maclean DJ, et al. Repressor- and activator-type ethylene response factors functioning in jasmonate signaling and disease resistance identified via a genome-wide screen of Arabidopsis transcription factor gene expression. Plant Physiol. 2005;139(2):949-59.
    • (2005) Plant Physiol , vol.139 , Issue.2 , pp. 949-959
    • McGrath, K.C.1    Dombrecht, B.2    Manners, J.M.3    Schenk, P.M.4    Edgar, C.I.5    Maclean, D.J.6
  • 47
    • 84876039714 scopus 로고    scopus 로고
    • Small RNA and degradome sequencing reveal complex miRNA regulation during cotton somatic embryogenesis
    • Yang XY, Wang LC, Yuan DJ, Lindsey K, Zhang XL. Small RNA and degradome sequencing reveal complex miRNA regulation during cotton somatic embryogenesis. J Exp Bot. 2013;64(6):1521-36.
    • (2013) J Exp Bot , vol.64 , Issue.6 , pp. 1521-1536
    • Yang, X.Y.1    Wang, L.C.2    Yuan, D.J.3    Lindsey, K.4    Zhang, X.L.5
  • 49
    • 84882253104 scopus 로고    scopus 로고
    • De novo assembly and characterization of fruit transcriptome in Litchi chinensis Sonn and analysis of differentially regulated genes in fruit in response to shading
    • Li C, Wang Y, Huang X, Li J, Wang H, Li J. De novo assembly and characterization of fruit transcriptome in Litchi chinensis Sonn and analysis of differentially regulated genes in fruit in response to shading. BMC Genomics. 2013;14:552.
    • (2013) BMC Genomics , vol.14 , pp. 552
    • Li, C.1    Wang, Y.2    Huang, X.3    Li, J.4    Wang, H.5    Li, J.6
  • 50
    • 24644503098 scopus 로고    scopus 로고
    • Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research
    • Conesa A, Gotz S, Garcia-Gomez JM, Terol J, Talon M, Robles M. Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics. 2005;21(18):3674-6.
    • (2005) Bioinformatics , vol.21 , Issue.18 , pp. 3674-3676
    • Conesa, A.1    Gotz, S.2    Garcia-Gomez, J.M.3    Terol, J.4    Talon, M.5    Robles, M.6
  • 51
    • 33747846582 scopus 로고    scopus 로고
    • WEGO: a web tool for plotting GO annotations
    • Ye J, Fang L, Zheng H, Zhang Y, Chen J, Zhang Z, et al. WEGO: a web tool for plotting GO annotations. Nucleic Acids Res. 2006;34(Web Server issue):W293-7.
    • (2006) Nucleic Acids Res , vol.34 , Issue.WEB SERVER ISSUE , pp. W293-W297
    • Ye, J.1    Fang, L.2    Zheng, H.3    Zhang, Y.4    Chen, J.5    Zhang, Z.6
  • 52
    • 77953217767 scopus 로고    scopus 로고
    • Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    • Ma Z, Coruh C, Axtell MJ. Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus. Plant Cell. 2010;22(4):1090-103.
    • (2010) Plant Cell , vol.22 , Issue.4 , pp. 1090-1103
    • Ma, Z.1    Coruh, C.2    Axtell, M.J.3
  • 53
    • 58049220318 scopus 로고    scopus 로고
    • CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets
    • Addo-Quaye C, Miller W, Axtell MJ. CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets. Bioinformatics. 2009;25(1):130-1.
    • (2009) Bioinformatics , vol.25 , Issue.1 , pp. 130-131
    • Addo-Quaye, C.1    Miller, W.2    Axtell, M.J.3
  • 54
    • 43449091567 scopus 로고    scopus 로고
    • Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome
    • Addo-Quaye C, Eshoo TW, Bartel DP, Axtell MJ. Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome. Curr Biol. 2008;18(10):758-62.
    • (2008) Curr Biol , vol.18 , Issue.10 , pp. 758-762
    • Addo-Quaye, C.1    Eshoo, T.W.2    Bartel, D.P.3    Axtell, M.J.4
  • 55
    • 73249121905 scopus 로고    scopus 로고
    • Sliced microRNA targets and precise loop-first processing of MIR319 hairpins revealed by analysis of the Physcomitrella patens degradome
    • Addo-Quaye C, Snyder JA, Park YB, Li YF, Sunkar R, Axtell MJ. Sliced microRNA targets and precise loop-first processing of MIR319 hairpins revealed by analysis of the Physcomitrella patens degradome. RNA. 2009;15(12):2112-21.
    • (2009) RNA , vol.15 , Issue.12 , pp. 2112-2121
    • Addo-Quaye, C.1    Snyder, J.A.2    Park, Y.B.3    Li, Y.F.4    Sunkar, R.5    Axtell, M.J.6


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