Distribution of phosphatase activity and various bacterial phyla in the rhizosphere of Hordeum vulgare L. depending on P availability

Soil Biology and Biochemistry

Volumn 89, Issue , 2015, Pages 44-51

  Spohn, Marie ^a   Treichel, Nicole Simone ^b   Cormann, Michael ^a   Schloter, Michael ^b   Fischer, Doreen ^b  

^a UNIVERSITY OF BAYREUTH   (Germany)

^b INSTITUTE OF EPIDEMIOLOGY   (Germany)

Author keywords

Enzyme activity; Fertilization; Organic phosphorus mineralization; Phosphatases; Rhizosphere bacteria; Root zones

Indexed keywords

BACTERIA; ENZYME ACTIVITY; MINERALOGY; PHOSPHATASES; PHOSPHORUS;

ACID PHOSPHATASE ACTIVITIES; ALKALINE PHOSPHATASE ACTIVITY; BARLEY (HORDEUM VULGARE L.); FERTILIZATION; GREENHOUSE EXPERIMENTS; ORGANIC PHOSPHORUS; RHIZOSPHERE BACTERIA; ROOT ZONE;

SOILS;

BACTERIUM; BARLEY; ENZYME ACTIVITY; FERTILIZER APPLICATION; FLUORESCENCE; GRASS; HETEROGENEITY; MINERALIZATION; NUTRIENT AVAILABILITY; PHOSPHORUS; RHIZOSPHERE; SOIL MICROORGANISM;

BACTERIA (MICROORGANISMS); FIRMICUTES; GAMMAPROTEOBACTERIA; HORDEUM; HORDEUM VULGARE; HORDEUM VULGARE SUBSP. VULGARE;

EID: 84938631123     PISSN: 00380717     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.soilbio.2015.06.018     Document Type: Article

References (63)

1. Aldén L., Demoling F., Baath E. Rapid method of determining factors limiting bacterial growth in soil. Applied and Environmental Microbiology 2001, 67:1830-1838.
2. Amann R.I., Binder B.J., Olson R.J., Chisholm S.W., Devereux R., Stahl D.A. Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Applied Environmental Microbiology 1990, 56:1919-1925.
3. Burns R.G., DeForest J.L., Marxsen J., Sinsabaugh R.L., Stromberger M.E., Wallenstein M.D., Weintraub M.N., Zoppini A. Soil enzymes in a changing environment: current knowledge and future directions. Soil Biology and Biochemistry 2013, 58:216-234.
4. Castillo C.G., Puccio F., Morales D., Borie F., Sieverding E. Early arbuscular mycorrhiza colonization of wheat, barley and oats in Andosols of southern Chile. Journal of Soil Science and Plant Nutrition 2012, 12:511-524.
5. Cordell D., Drangert J.O., White S. The story of phosphorus: global food security and food for thought. Global Environmental Change 2009, 19:292-305.
6. Daims H., Brühl A., Amann R., Schleifer K.-H., Wagner M. The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: development and evaluation of a more comprehensive probe set. Systematic and Applied Microbiology 1999, 22:434-444.
7. De Nobili M., Contin M., Mondini C., Brookes P.C. Soil microbial biomass is triggered into activity by trace amounts of substrate. Soil Biology and Biochemistry 2001, 33:1163-1170.
8. DeAngelis K.M., Brodie E.L., DeSantis T.Z., Andersen G.L., Lindow S.E., Firestone M.K. Selective progressive response of soil microbial community to wild oat roots. The ISME Journal 2009, 3:168-178.
9. DeLong E.F., Wickham G.S., Pace N.R. Phylogenetic stains: ribosomal RNA-based probes for the identification of single microbial cells. Science 1989, 243:1360-1363.
10. Dennis P.G., Miller A.J., Hirsch P.R. Are root exudates more important than other sources of rhizodeposits in structuring rhizosphere bacterial communities?. FEMS Microbiology Ecology 2010, 72:313-327.
11. Dick W.A., Juma N.G., Tabatabai M.A. Effects of soils on acid phosphatase and inorganic pyrophosphatase of corn roots. Soil Science 1983, 136:19-25.
12. Dietz G.W., Heppel L.A. Studies on the uptake of hexose phosphates. 3. Mechanism of uptake of glucose 1-phosphate in Escherichia coli. The Journal of Biological Chemistry 1971, 246:2891-2897.
13. Eastman A.W., Heinrichs D.E., Yuan Z.-C. Comparative and genetic analysis of the four sequenced Paenibacillus polymyxa genomes reveals a diverse metabolism and conservation of genes relevant to plant-growth promotion and competitiveness. BMC Genomics 2014, 15:851.
14. Elser J.J., Acharya K., Kyle M., Cotner J., Makino W., Markow T., Watts T., Hobbie S., Fagan W., Schade J., Hood J., Sterner R.W. Growth rate-stoichiometry couplings in diverse biota. Ecology Letters 2003, 6:936-943.
15. Fierer N., Bradford M.A., Jackson R.B. Toward an ecological classification of soil bacteria. Ecology 2007, 88:1354-1364.
16. 3 on the actinobacterial community structure and function in the rhizosphere of European beech (Fagus sylvatica L.). Frontiers in Microbiology 2014, 5.
17. Heath R.T. Microbial turnover of organic phosphorus in aquatic systems. Organic Phosphorus in the Environment 2005, Cabi Publishing, Wallingford, UK. B.L. Turner, E. Frossard, D.S. Baldwin (Eds.).
18. Hernandez I., Hwang S.J., Heath R.T. Measurement of phosphomonoesterase activity with a radiolabelled glucose-6-phosphate. Role in the phosphorus requirement of phytoplankton and bacterioplankton in a temperate mesotrophic lake. Archiv für Hydrobiologie 1996, 137:265-280.
19. Heuck C., Weig A., Spohn M. Soil microbial biomass C:N:P stoichiometry and microbial use of organic phosphorus. Soil Biology and Biochemistry 2015, 85:119-129.
20. Hinsinger P. Bioavailability of soil inorganic P in the rhizosphere as affected by root-induced chemical changes: a review. Plant and Soil 2001, 237:173-195.
21. Hinsinger P., Bengough A., Vetterlein D., Young I. Rhizosphere: biophysics, biogeochemistry and ecological relevance. Plant and Soil 2009, 321:117-152.
22. Hofmann A., Fischer D., Hartmann A., Schmid M. Colonization of plants by human pathogenic bacteria in the course of organic vegetable production. Frontiers in Microbiology 2014, 5:191.
23. Hol W.H.G., de Boer W., Medina A. Beneficial interactions in the rhizosphere. Interactions in Soil: Promoting Plant Growth, Biodiversity, Community and Ecosystems 2014, vol. 1:59-80. (Chapter 3), Springer Science+Business Media Dordrecht.
24. Hoppe H.-G. Phosphatase activity in the sea. Hydrobiologia 2003, 493:187-200.
25. Hoppe H.-G., Sören U. Profiles of ectoenzymes in the Indian Ocean: phenomena of phosphatase activity in the mesopelagic zone. Aquatic Microbial Ecology 1999, 19:139-148.
26. Hu S.J., van Bruggen A.H.C., Grünwald N.J. Dynamics of bacterial populations in relation to carbon availability in a residue-amended soil. Applied Soil Ecology 1999, 13:21-30.
27. 4 with P-solubilizing microorganisms. Soil Biology and Biochemistry 1995, 27:265-270.
28. Joergensen R.G., Brookes P.C., Jenkinson D.S. Survival of the soil microbial biomass at elevated temperatures. Soil Biology and Biochemistry 1990, 22:1129-1136.
29. Jones D.L., Nguyen C., Finlay R.D. Carbon flow in the rhizosphere: carbon trading at the soil-root interface. Plant and Soil 2009, 321:5-33.
30. Juma N.G., Tabatabai M.A. Hydrolysis of organic phosphates by corn and soybean roots. Plant and Soil 1988, 107:31-38.
31. Kandeler E., Marschner P., Tscherko D., Gahoonia T.S., Nielsen N.E. Microbial community composition and functional diversity in the rhizosphere of maize. Plant and Soil 2002, 238:301-312.
32. Loy A., Lehner A., Lee N., Adamczyk J., Meier H., Ernst J., Schleifer K.-H., Wagner M. Oligonucleotide microarray for 16S rRNA gene-based detection of all recognized lineages of sulfate-reducing prokaryotes in the environment. Applied and Environmental Microbiology 2002, 68:5064-5081.
33. Makino W., Cotner J.B., Sterner R.W., Elser J.J. Are bacteria more like plants or animals? Growth rate and resource dependence of bacterial C:N:P stoichiometry. Functional Ecology 2003, 17:121-130.
34. Manz W., Amann R., Ludwig W., Wagner M., Schleifer K.-H. Phylogenetic oligodeoxynucleotide probes for the major subclasses of Proteobacteria: problems and solutions. Systematic and Applied Microbiology 1992, 15:593-600.
35. Marschner P., Grierson P.F., Rengel Z. Microbial community composition and functioning in the rhizosphere of three Banksia species in native woodland in Western Australia. Applied Soil Ecology 2005, 28:191-201.
36. Marschner P., Crowley D., Rengel Z. Rhizosphere interactions between microorganisms and plants govern iron and phosphorus acquisition along the root axis - model and research methods. Soil Biology and Biochemistry 2011, 43:883-894.
37. Meier H., Amann R., Ludwig W., Schleifer K.-H. Specific oligonucleotide probes for in situ detection of a major group of gram-positive bacteria with low DNA G+C content. Systematic and Applied Microbiology 1999, 22:186-196.
38. Nannipieri P., Giagnoni L., Landi L., Renella G. Role of phosphatase enzymes in soil. Series: Soil Biology 2011, vol. 26. first ed. E.K. Bünemann, A. Oberson, E. Frossard (Eds.).
39. Neef A. Anwendung der in situ Einzelzell-Identifizierung von Bakterien zur Populationsanalyse in komplexen mikrobiellen Biozönosen 1997, Doctoral thesis (Technische Universität München).
40. Olander L.P., Vitousek P.M. Regulation of soil phosphatase and chitinase activity by N and P availability. Biogeochemistry 2000, 49:175-191.
41. Philippot L., Raaijmakers J.M., Lemanceau P., van der Putten W.H. Going back to the roots: the microbial ecology of the rhizosphere. Nature Reviews Microbiology 2013, 11:789-799.
42. R: A language and environment for statistical computing 2013, R Core Team, R Foundation for Statistical Computing, Vienna, Austria, URL. http://www.R-project.org.
43. Richardson A., Barea J.-M., McNeill A., Prigent-Combaret C. Acquisition of phosphorus and nitrogen in the rhizosphere and plant growth promotion by microorganisms. Plant and Soil 2009, 321:305-339.
44. Roller C., Wagner M., Amann R., Ludwig W., Schleifer K.-H. In situ probing of Gram-positive bacteria with high DNA G+C content using 23S rRNA- targeted oligonucleotides. Microbiology 1994, 140:2849-2858.
45. Schmidt H., Eickhorst T. Detection and quantification of native microbial populations on soil-grown rice roots by catalyzed reporter deposition-fluorescence in situ hybridization. FEMS Microbiology Ecology 2013, 87:390-402.
46. Sinsabaugh R.L., Lauber C.L., Weintraub M.N., Ahmed B., Allison S.D., Crenshaw C., Contosta A.R., Cusack D., Frey S., Gallo M.E., Gartner T.B., Hobbie S.E., Holland K., Keeler B.L., Powers J.S., Stursova M., Takacs-Vesbach C., Waldrop M., Wallenstein M., Zak D.R., Zeglin L.H. Stoichiometry of soil enzyme activity at global scale. Ecology Letters 2008, 11:1252-1264.
47. Skujins J.J., Braal L., McLaren A.D. Characterization of phosphatase in a terrestrial soil sterilized with an electron beam. Enzymologia 1962, 25:125-133.
48. 14C imaging. Soil Biology and Biochemistry 2013, 67:106-113.
49. Spohn M., Kuzyakov Y. Phosphorus mineralization can be driven by microbial need for carbon. Soil Biology and Biochemistry 2013, 69-75.
50. Spohn M., Kuzyakov Y. Spatial and temporal dynamics of hotspots of enzyme activity in soil as affected by living and dead roots - a soil zymography analysis. Plant and Soil 2014, 379:67-77.
51. Spohn M., Carminati A., Kuzyakov Y. Soil zymography - a novel in situ method for mapping distribution of enzyme activity in soil. Soil Biology and Biochemistry 2013, 58:275-280.
52. 33P isotopic dilution study. Soil Biology and Biochemistry 2013, 65:254-263.
53. Steenbergh A.K., Bodelier P.L.E., Hoogveld H.L., Slomp C.P., Laanbroek H.J. Phosphatases relieve carbon limitation of microbial activity in Baltic Sea sediments along a redox-gradient. Journal Limnology and Oceanography 2011, 56:2018-2026.
54. Tarafdar J.C., Jungk A. Phosphatase activity in the rhizosphere and its relation to the depletion of soil organic phosphorus. Biology Fertility of Soils 1987, 3:199-204.
55. Turner B.L., Wright S.J. The response of microbial biomass and hydrolytic enzymes to a decade of nitrogen, phosphorus, and potassium addition in a lowland tropical rain forest. Biogeochemistry 2014, 117:115-130.
56. Inceoğlu Ö., Salles J.F., van Overbeek L., van Elsas J.D. Effects of plant genotype and growth stage on the betaproteobacterial communities associated with different potato cultivars in two fields. Applied and Environmental Microbiology 2010, 76:3675-3684.
57. Vance E.D., Chapin F.S. Substrate limitations to microbial activity in taiga forest floors. Soil Biology and Biochemistry 2001, 33:173-188.
58. Wallner G., Amann R., Beisker W. Optimizing fluorescent in situ hybridization with rRNA-targeted oligonucleotide probes for flow cytometric identification of microorganisms. Cytometry 1993, 14:136-143.
59. Watt M., Hugenholtz P., White R., Vina K. Numbers and locations of native bacteria on field-grown wheat roots quantified by fluorescence in situ hybridization (FISH). Environmental Microbiology 2006, 8:871-884.
60. White P., Adu M., Broadley M., Brown L., Dupuy L., George T., et al. Importance of Juvenile Root Traits for Crop Yields. EGU General Assembly Conference Abstracts 2014, vol. 16:2337.
61. Yagil E.Z.R.A., Beacham I.R. Uptake of adenosine 5'-monophosphate by Escherichia coli. Journal of Bacteriology 1975, 121:401-405.
62. Zhang L., Ding X., Chen S., He X., Zhang F., Feng G. Reducing carbon: phosphorus ratio can enhance microbial phytin mineralization and lessen competition with maize for phosphorus. Journal of Plant Interactions 2014, 9:850-856.
63. Ziegler M., Engel M., Welzl G., Schloter M. Development of a simple root model to study the effects of single exudates on the development of bacterial community structure. Journal of Microbiological Methods 2013, 94:30-36.