메뉴 건너뛰기




Volumn 23, Issue 3, 2015, Pages 347-353

Comprehensive massive parallel DNA sequencing strategy for the genetic diagnosis of the neuro-cardio-facio-cutaneous syndromes

Author keywords

[No Author keywords available]

Indexed keywords

B RAF KINASE; CBL PROTEIN; GENOMIC DNA; K RAS PROTEIN; PROTEIN TYROSINE PHOSPHATASE SHP 2; SOS PROTEIN; SHOC2 PROTEIN, HUMAN; SIGNAL PEPTIDE;

EID: 84938422130     PISSN: 10184813     EISSN: 14765438     Source Type: Journal    
DOI: 10.1038/ejhg.2014.97     Document Type: Article
Times cited : (17)

References (40)
  • 1
    • 78650393745 scopus 로고    scopus 로고
    • Disorders of dysregulated signal traffic through the RAS-MAPK pathway: Phenotypic spectrum and molecular mechanisms
    • Tartaglia M, Gelb BD: Disorders of dysregulated signal traffic through the RAS-MAPK pathway: phenotypic spectrum and molecular mechanisms. Ann N Y Acad Sci 2010; 1214: 99-121.
    • (2010) Ann N y Acad Sci , vol.1214 , pp. 99-121
    • Tartaglia, M.1    Gelb, B.D.2
  • 3
    • 58149395502 scopus 로고    scopus 로고
    • Noonan, Costello and cardio-facio-cutaneous syndromes: Dysregulation of the Ras-MAPK pathway
    • Tidyman WE, Rauen KA: Noonan, Costello and cardio-facio-cutaneous syndromes: dysregulation of the Ras-MAPK pathway. Expert Rev Mol Med 2008; 10: e37.
    • (2008) Expert Rev Mol Med , vol.10 , pp. e37
    • Tidyman, W.E.1    Rauen, K.A.2
  • 4
    • 80053309057 scopus 로고    scopus 로고
    • Prenatal features of Noonan syndrome: Prevalence and prognostic value
    • Baldassarre G, Mussa A, Dotta A et al.: Prenatal features of Noonan syndrome: prevalence and prognostic value. Prenat Diagn 2011; 31: 949-954.
    • (2011) Prenat Diagn , vol.31 , pp. 949-954
    • Baldassarre, G.1    Mussa, A.2    Dotta, A.3
  • 5
    • 80053203956 scopus 로고    scopus 로고
    • RASopathies: Clinical diagnosis in the first year of life
    • Digilio MC, Lepri F, Baban A et al.: RASopathies: clinical diagnosis in the first year of life. Mol Syndromol 2011; 1: 282-289.
    • (2011) Mol Syndromol , vol.1 , pp. 282-289
    • Digilio, M.C.1    Lepri, F.2    Baban, A.3
  • 6
    • 33644696097 scopus 로고    scopus 로고
    • Germline mutations in genes within the MAPK pathway cause cardio-facio-cutaneous syndrome
    • Rodriguez-Viciana P, Tetsu O, Tidyman WE et al.: Germline mutations in genes within the MAPK pathway cause cardio-facio-cutaneous syndrome. Science 2006; 311: 1287-1290.
    • (2006) Science , vol.311 , pp. 1287-1290
    • Rodriguez-Viciana, P.1    Tetsu, O.2    Tidyman, W.E.3
  • 7
    • 77957693114 scopus 로고    scopus 로고
    • Noonan syndrome: Clinical features, diagnosis, and management guidelines
    • Romano AA, Allanson JE, Dahlgren J et al.: Noonan syndrome: clinical features, diagnosis, and management guidelines. Pediatrics 2010; 126: 746-759.
    • (2010) Pediatrics , vol.126 , pp. 746-759
    • Romano, A.A.1    Allanson, J.E.2    Dahlgren, J.3
  • 8
    • 85027948290 scopus 로고    scopus 로고
    • Costello syndrome: A Ras/mitogen activated protein kinase pathway syndrome (rasopathy) resulting from HRAS germline mutations
    • Gripp KW, Lin AE: Costello syndrome: a Ras/mitogen activated protein kinase pathway syndrome (rasopathy) resulting from HRAS germline mutations. Genet Med 2012; 14: 285-292.
    • (2012) Genet Med , vol.14 , pp. 285-292
    • Gripp, K.W.1    Lin, A.E.2
  • 9
    • 84868004666 scopus 로고    scopus 로고
    • Rodríguez-Gonzá lez F: LEOPARD syndrome: Clinical features and gene mutations
    • Martínez-Quintana E, Rodríguez-Gonzá lez F: LEOPARD syndrome: clinical features and gene mutations. Mol Syndromol 2012; 3: 145-157.
    • (2012) Mol Syndromol , vol.3 , pp. 145-157
    • Martínez-Quintana, E.1
  • 10
    • 37249013316 scopus 로고    scopus 로고
    • Cardio-facio-cutaneous and Noonan syndromes due to mutations in the RAS/MAPK signalling pathway: Genotype-phenotype relationships and overlap with Costello syndrome
    • Nava C, Hanna N, Michot C et al.: Cardio-facio-cutaneous and Noonan syndromes due to mutations in the RAS/MAPK signalling pathway: genotype-phenotype relationships and overlap with Costello syndrome. J Med Genet 2007; 44: 763-771.
    • (2007) J Med Genet , vol.44 , pp. 763-771
    • Nava, C.1    Hanna, N.2    Michot, C.3
  • 12
    • 84880311756 scopus 로고    scopus 로고
    • Gain-of-function mutations in RIT1 cause Noonan syndrome, a RAS/MAPK pathway syndrome
    • Aoki Y, Niihori T, Banjo T et al.: Gain-of-function mutations in RIT1 cause Noonan syndrome, a RAS/MAPK pathway syndrome. Am J Hum Genet 2013; 93: 173-180.
    • (2013) Am J Hum Genet , vol.93 , pp. 173-180
    • Aoki, Y.1    Niihori, T.2    Banjo, T.3
  • 13
    • 84938435206 scopus 로고    scopus 로고
    • The identification of a novel gene identified by exome sequencing reveals the upstream components of the RAS/MAPK signaling pathway involved in Noonan syndrome (Abstract/Program #215)
    • 6-10 November in San Francisco, California
    • Yntema H, Nillesen W, Overman J et al.: The identification of a novel gene identified by exome sequencing reveals the upstream components of the RAS/MAPK signaling pathway involved in Noonan syndrome (Abstract/Program #215). Presented at 62nd Annual Meeting of the American Society of Human Genetics, 6-10 November 2012 in San Francisco, California.
    • (2012) Presented at 62nd Annual Meeting of the American Society of Human Genetics
    • Yntema, H.1    Nillesen, W.2    Overman, J.3
  • 14
    • 37249006234 scopus 로고    scopus 로고
    • Mutation and phenotypic spectrum in patients with cardio-facio-cutaneous and Costello syndrome
    • Schulz AL, Albrecht B, Arici C et al.: Mutation and phenotypic spectrum in patients with cardio-facio-cutaneous and Costello syndrome. Clin Genet 2008; 73: 62-70.
    • (2008) Clin Genet , vol.73 , pp. 62-70
    • Schulz, A.L.1    Albrecht, B.2    Arici, C.3
  • 15
    • 50049116085 scopus 로고    scopus 로고
    • Noonan and cardio-facio-cutaneous syndromes: Two clinically and genetically overlapping disorders
    • Nyström AM, Ekvall S, Berglund E et al.: Noonan and cardio-facio-cutaneous syndromes: two clinically and genetically overlapping disorders. J Med Genet 2008; 45: 500-506.
    • (2008) J Med Genet , vol.45 , pp. 500-506
    • Nyström, A.M.1    Ekvall, S.2    Berglund, E.3
  • 16
    • 84891464356 scopus 로고    scopus 로고
    • Program CLA
    • Program CLA: Molecular Pathology Checklist. http://www.cap.org/apps/docs/laboratory-accreditation/checklists/new/molecular-pathology-checklist.pdf
    • Molecular Pathology Checklist.
  • 17
    • 84869429716 scopus 로고    scopus 로고
    • Assuring the quality of next-generation sequencing in clinical laboratory practice
    • Gargis AS, Kalman L, Berry MW et al.: Assuring the quality of next-generation sequencing in clinical laboratory practice. Nat Biotechnol 2012; 30: 1033-1036.
    • (2012) Nat Biotechnol , vol.30 , pp. 1033-1036
    • Gargis, A.S.1    Kalman, L.2    Berry, M.W.3
  • 18
    • 84883897500 scopus 로고    scopus 로고
    • ACMG clinical laboratory standards for next-generation sequencing
    • Rehm HL, Bale SJ, Bayrak-Toydemir P et al.: ACMG clinical laboratory standards for next-generation sequencing. Genet Med 2013; 15: 733-747.
    • (2013) Genet Med , vol.15 , pp. 733-747
    • Rehm, H.L.1    Bale, S.J.2    Bayrak-Toydemir, P.3
  • 19
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the WWW for general users and for biologist programmers
    • Rozen S, Skaletsky H: Primer3 on the WWW for general users and for biologist programmers. Methods Mol Biol 2000; 132: 365-386.
    • (2000) Methods Mol Biol , vol.132 , pp. 365-386
    • Rozen, S.1    Skaletsky, H.2
  • 20
    • 84875519657 scopus 로고    scopus 로고
    • Nonoptical massive parallel DNA sequencing of BRCA1 and BRCA2 genes in a diagnostic setting
    • Costa JL, Sousa S, Justino A et al.: Nonoptical massive parallel DNA sequencing of BRCA1 and BRCA2 genes in a diagnostic setting. Hum Mutat 2013; 34: 629-635.
    • (2013) Hum Mutat , vol.34 , pp. 629-635
    • Costa, J.L.1    Sousa, S.2    Justino, A.3
  • 21
    • 84865591846 scopus 로고    scopus 로고
    • A tale of three next generation sequencing platforms: Comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers
    • Quail MA, Smith M, Coupland P et al.: A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers. BMC Genomics 2012; 13: 341.
    • (2012) BMC Genomics , vol.13 , pp. 341
    • Quail, M.A.1    Smith, M.2    Coupland, P.3
  • 22
    • 78549273639 scopus 로고    scopus 로고
    • A standardized framework for the validation and verification of clinical molecular genetic tests
    • Mattocks CJ, Morris MA, Matthijs G et al.: A standardized framework for the validation and verification of clinical molecular genetic tests. Eur J Hum Genet 2010; 18: 1276-1288.
    • (2010) Eur J Hum Genet , vol.18 , pp. 1276-1288
    • Mattocks, C.J.1    Morris, M.A.2    Matthijs, G.3
  • 23
    • 77951640946 scopus 로고    scopus 로고
    • A method and server for predicting damaging missense mutations
    • Adzhubei IA, Schmidt S, Peshkin L et al.: A method and server for predicting damaging missense mutations. Nat Methods 2010; 7: 248-249.
    • (2010) Nat Methods , vol.7 , pp. 248-249
    • Adzhubei, I.A.1    Schmidt, S.2    Peshkin, L.3
  • 24
    • 77955151784 scopus 로고    scopus 로고
    • MutationTaster evaluates disease-causing potential of sequence alterations
    • Schwarz JM, Rödelsperger C, Schuelke M, Seelow D: MutationTaster evaluates disease-causing potential of sequence alterations. Nat Methods 2010; 7: 575-576.
    • (2010) Nat Methods , vol.7 , pp. 575-576
    • Schwarz, J.M.1    Rödelsperger, C.2    Schuelke, M.3    Seelow, D.4
  • 25
    • 67749137351 scopus 로고    scopus 로고
    • Functional annotations improve the predictive score of human disease-related mutations in proteins
    • Calabrese R, Capriotti E, Fariselli P, Martelli PL, Casadio R: Functional annotations improve the predictive score of human disease-related mutations in proteins. Hum Mutat 2009; 30: 1237-1244.
    • (2009) Hum Mutat , vol.30 , pp. 1237-1244
    • Calabrese, R.1    Capriotti, E.2    Fariselli, P.3    Martelli, P.L.4    Casadio, R.5
  • 27
    • 0033987736 scopus 로고    scopus 로고
    • Mutation nomenclature extensions and suggestions to describe complex mutations: A discussion
    • den Dunnen JT, Antonarakis SE: Mutation nomenclature extensions and suggestions to describe complex mutations: a discussion. Hum Mutat 2000; 15: 7-12.
    • (2000) Hum Mutat , vol.15 , pp. 7-12
    • Den Dunnen, J.T.1    Antonarakis, S.E.2
  • 28
    • 38149063754 scopus 로고    scopus 로고
    • Improving sequence variant descriptions in mutation databases and literature using the Mutalyzer sequence variation nomenclature checker
    • Wildeman M, van Ophuizen E, den Dunnen JT, Taschner PE: Improving sequence variant descriptions in mutation databases and literature using the Mutalyzer sequence variation nomenclature checker. Hum Mutat 2008; 29: 6-13.
    • (2008) Hum Mutat , vol.29 , pp. 6-13
    • Wildeman, M.1    Van Ophuizen, E.2    Den Dunnen, J.T.3    Taschner, P.E.4
  • 29
    • 77955618708 scopus 로고    scopus 로고
    • Comparison of the Illumina Genome Analyzer and Roche 454 GS FLX for resequencing of hypertrophic cardiomyopathy-associated genes
    • Dames S, Durtschi J, Geiersbach K, Stephens J, Voelkerding KV: Comparison of the Illumina Genome Analyzer and Roche 454 GS FLX for resequencing of hypertrophic cardiomyopathy-associated genes. J Biomol Tech 2010; 21: 73-80.
    • (2010) J Biomol Tech , vol.21 , pp. 73-80
    • Dames, S.1    Durtschi, J.2    Geiersbach, K.3    Stephens, J.4    Voelkerding, K.V.5
  • 30
    • 84862002889 scopus 로고    scopus 로고
    • Consensus rules in variant detection from next-generation sequencing data
    • Jia P, Li F, Xia J et al.: Consensus rules in variant detection from next-generation sequencing data. PLoS One 2012; 7: e38470.
    • (2012) PLoS One , vol.7 , pp. e38470
    • Jia, P.1    Li, F.2    Xia, J.3
  • 31
    • 84867400465 scopus 로고    scopus 로고
    • Development of a next-generation sequencing method for BRCA mutation screening: A comparison between a high-throughput and a benchtop platform
    • Chan M, Ji SM, Yeo ZX et al.: Development of a next-generation sequencing method for BRCA mutation screening: a comparison between a high-throughput and a benchtop platform. J Mol Diagn 2012; 14: 602-612.
    • (2012) J Mol Diagn , vol.14 , pp. 602-612
    • Chan, M.1    Ji, S.M.2    Yeo, Z.X.3
  • 32
    • 79951992625 scopus 로고    scopus 로고
    • Co-occurring PTPN11 and SOS1 gene mutations in Noonan syndrome: Does this predict a more severe phenotype?
    • Brasil AS, Malaquias AC, Wanderley LT et al.: Co-occurring PTPN11 and SOS1 gene mutations in Noonan syndrome: does this predict a more severe phenotype? Arq Bras Endocrinol Metabol 2010; 54: 717-722.
    • (2010) Arq Bras Endocrinol Metabol , vol.54 , pp. 717-722
    • Brasil, A.S.1    Malaquias, A.C.2    Wanderley, L.T.3
  • 33
    • 79956222229 scopus 로고    scopus 로고
    • Co-occurring SHOC2 and PTPN11 mutations in a patient with severe/complex Noonan syndrome-like phenotype
    • Ekvall S, Hagenas L, Allanson J, Anneren G, Bondeson ML: Co-occurring SHOC2 and PTPN11 mutations in a patient with severe/complex Noonan syndrome-like phenotype. Am J Med Genet A 2011; 155A: 1217-1224.
    • (2011) Am J Med Genet A , vol.155 A , pp. 1217-1224
    • Ekvall, S.1    Hagenas, L.2    Allanson, J.3    Anneren, G.4    Bondeson, M.L.5
  • 34
    • 42149139456 scopus 로고    scopus 로고
    • ACMG Recommendations for Standards for Interpretation and Reporting of Sequence Variations: Revisions 2007
    • Richards CS, Bale S, Bellissimo DB et al.: ACMG recommendations for standards for interpretation and reporting of sequence variations: revisions 2007. Genet Med 2008; 10: 294-300.
    • (2008) Genet Med , vol.10 , pp. 294-300
    • Richards, C.S.1    Bale, S.2    Bellissimo, D.B.3
  • 35
    • 18344370436 scopus 로고    scopus 로고
    • PTPN11 mutations in Noonan syndrome: Molecular spectrum, genotype-phenotype correlation, and phenotypic heterogeneity
    • Tartaglia M, Kalidas K, Shaw A et al.: PTPN11 mutations in Noonan syndrome: molecular spectrum, genotype-phenotype correlation, and phenotypic heterogeneity. Am J Hum Genet 2002; 70: 1555-1563.
    • (2002) Am J Hum Genet , vol.70 , pp. 1555-1563
    • Tartaglia, M.1    Kalidas, K.2    Shaw, A.3
  • 36
    • 0035079850 scopus 로고    scopus 로고
    • The effect of sex and age on facial asymmetry in healthy subjects: A cross-sectional study from adolescence to midadulthood
    • Ferrario VF, Sforza C, Ciusa V, Dellavia C, Tartaglia GM: The effect of sex and age on facial asymmetry in healthy subjects: a cross-sectional study from adolescence to midadulthood. J Oral Maxillofac Surg 2001; 59: 382-388.
    • (2001) J Oral Maxillofac Surg , vol.59 , pp. 382-388
    • Ferrario, V.F.1    Sforza, C.2    Ciusa, V.3    Dellavia, C.4    Tartaglia, G.M.5
  • 37
    • 0036074033 scopus 로고    scopus 로고
    • Grouping of multiple-lentigines/LEOPARD and Noonan syndromes on the PTPN11 gene
    • Digilio MC, Conti E, Sarkozy A et al.: Grouping of multiple-lentigines/LEOPARD and Noonan syndromes on the PTPN11 gene. Am J Hum Genet 2002; 71: 389-394.
    • (2002) Am J Hum Genet , vol.71 , pp. 389-394
    • Digilio, M.C.1    Conti, E.2    Sarkozy, A.3
  • 38
    • 34547530823 scopus 로고    scopus 로고
    • Gain-of-function RAF1 mutations cause Noonan and LEOPARD syndromes with hypertrophic cardiomyopathy
    • Pandit B, Sarkozy A, Pennacchio LA et al.: Gain-of-function RAF1 mutations cause Noonan and LEOPARD syndromes with hypertrophic cardiomyopathy. Nat Genet 2007; 39: 1007-1012.
    • (2007) Nat Genet , vol.39 , pp. 1007-1012
    • Pandit, B.1    Sarkozy, A.2    Pennacchio, L.A.3
  • 39
    • 69349105766 scopus 로고    scopus 로고
    • Mutation of SHOC2 promotes aberrant protein N-myristoylation and causes Noonan-like syndrome with loose anagen hair
    • Cordeddu V, Di Schiavi E, Pennacchio LA et al.: Mutation of SHOC2 promotes aberrant protein N-myristoylation and causes Noonan-like syndrome with loose anagen hair. Nat Genet 2009; 41: 1022-1026.
    • (2009) Nat Genet , vol.41 , pp. 1022-1026
    • Cordeddu, V.1    Di Schiavi, E.2    Pennacchio, L.A.3
  • 40
    • 84858298190 scopus 로고    scopus 로고
    • Transcriptional hallmarks of Noonan syndrome and Noonan-like syndrome with loose anagen hair
    • Ferrero GB, Picco G, Baldassarre G et al.: Transcriptional hallmarks of Noonan syndrome and Noonan-like syndrome with loose anagen hair. Hum Mutat 2012; 33: 703-709.
    • (2012) Hum Mutat , vol.33 , pp. 703-709
    • Ferrero, G.B.1    Picco, G.2    Baldassarre, G.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.