Evolution of influenza B virus in Kuala Lumpur, Malaysia, between 1995 and 2008

Journal of Virology

Volumn 89, Issue 18, 2015, Pages 9689-9692

  Sam, I Ching ^a,b   Su, Yvonne C F ^c   Chan, Yoke Fun ^a   Nor'E, Siti Sarah ^a   Hassan, Ardalinah ^a   Jafar, Faizatul Lela ^a   Joseph, Udayan ^c   Halpin, Rebecca A ^d   Ghedin, Elodie ^e   Hooi, Poh Sim ^b   Fourment, Mathieu ^f,g   Hassan, Hamimah ^a   AbuBakar, Sazaly ^a   Wentworth, David E ^d,h   Smith, Gavin J D ^c,f  

^a UNIVERSITY OF MALAYA   (Malaysia)

^b UNIVERSITY MALAYA MEDICAL CENTRE   (Malaysia)

^c DUKE NUS MEDICAL SCHOOL   (Singapore)

^d J CRAIG VENTER INSTITUTE   (United States)

^e NEW YORK UNIVERSITY   (United States)

^f DUKE UNIVERSITY SCHOOL OF MEDICINE   (United States)

^g University of Sydney   (Australia)

^h CENTERS FOR DISEASE CONTROL AND PREVENTION   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

INFLUENZA VACCINE; VIRUS RNA;

AMINO ACID SUBSTITUTION; ARTICLE; DISEASE TRANSMISSION; HA GENE; HUMAN; INFECTION RATE; INFLUENZA B; INFLUENZA B VIRUS; MALAYSIA; NONHUMAN; PHYLOGENY; POPULATION RESEARCH; PRIORITY JOURNAL; VIRUS GENE; VIRUS GENOME; VIRUS IDENTIFICATION; VIRUS ISOLATION; VIRUS STRAIN; FEMALE; GENETICS; INFLUENZA, HUMAN; MALE; MOLECULAR EVOLUTION; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE;

BASE SEQUENCE; EVOLUTION, MOLECULAR; FEMALE; HUMANS; INFLUENZA B VIRUS; INFLUENZA, HUMAN; MALAYSIA; MALE; MOLECULAR SEQUENCE DATA;

EID: 84938343593     PISSN: 0022538X     EISSN: 10985514     Source Type: Journal    
DOI: 10.1128/JVI.00708-15     Document Type: Article

References (24)

1. Glezen WP, Schmier JK, Kuehn CM, Ryan KJ, Oxford J. 2013. The burden of influenza B: a structured literature review. Am J Public Health 103:e43-e51. http://dx.doi.org/10.2105/AJPH.2012.301137.
2. Chen R, Holmes EC. 2008. The evolutionary dynamics of human influenza B virus. J Mol Evol 66:655-663. http://dx.doi.org/10.1007/s00239-008-9119-z.
3. Vijaykrishna D, Holmes EC, Joseph U, Fourment M, Su YC, Halpin R, Lee RT, Deng YM, Gunalan V, Lin X, Stockwell TB, Fedorova NB, Zhou B, Spirason N, Kühnert D, Boskova V, Stadler T, Costa AM, Dwyer DE, Huang QS, Jennings LC, Rawlinson W, Sullivan SG, Hurt AC, Maurer-Stroh S, Wentworth DE, Smith GJ, Barr I. 2015. The contrasting phylodynamics of human influenza B viruses. eLife 4:e05055. http://dx.doi.org/10.7554/eLife.05055.
4. Sam IC, Abdul-Murad A, Karunakaran R, Rampal S, Chan YF, Nathan AM, Ariffin H. 2010. Clinical features of Malaysian children hospitalized with community-acquired seasonal influenza. Int J Infect Dis 14(Suppl 3):e36-e40. http://dx.doi.org/10.1016/j.ijid.2009.10.005.
5. Khor CS, Sam IC, Hooi PS, Quek KF, Chan YF. 2012. Epidemiology and seasonality of respiratory viral infections in hospitalized children in Kuala Lumpur, Malaysia: a retrospective study of 27 years. BMC Pediatr 12:32. http://dx.doi.org/10.1186/1471-2431-12-32.
6. Saat Z, Rashid TRTA, Yusof MA, Kassim FM, Thayan R, Kuen KS, Othman KA, Saraswathy TS. 2010. Seasonal influenza virus strains circulating inMalaysia from2005 to 2009. Southeast Asia J TropMed Public Health 41:1368-1373. http://www.tm.mahidol.ac.th/seameo/2010-41-6/14-4858.pdf.
7. Sam IC, Shaw R, Chan YF, Hooi PS, Hurt AC, Barr IG. 2013. Seroprevalence of seasonal and pandemic influenza A in Kuala Lumpur, Malaysia in 2008-2010. JMed Virol 85:1420-1425. http://dx.doi.org/10.1002/jmv.23622.
8. Li K, Brownley A, Stockwell TB, Beeson K, McIntosh TC, Busam D, Ferriera S, Murphy S, Levy S. 2008. Novel computational methods for increasing PCR primer design effectiveness in directed sequencing. BMC Bioinformatics 9:191. http://dx.doi.org/10.1186/1471-2105-9-191.
9. Ghedin E, Sengamalay NA, Shumway M, Zaborsky J, Feldblyum T, Subbu V, Spiro DJ, Sitz J, Koo H, Bolotov P, Dernovoy D, Tatusova T,Bao Y, St George K, Taylor J, Lipman DJ, Fraser CM, Taubenberger JK, Salzberg SL. 2005. Large-scale sequencing of human influenza reveals the dynamic nature of viral genome evolution. Nature 437:1162-1166. http://dx.doi.org/10.1038/nature04239.
10. Zhou B, Donnelly ME, Scholes DT, St George K, Hatta M, Kawaoka Y, Wentworth DE. 2009. Single reaction genomic ampli?cation accelerates sequencing and vaccine production for classical and swine origin human influenza a viruses. J Virol 83:10309-10313. http://dx.doi.org/10.1128/JVI.01109-09.
11. Minin VN, Bloomquist EW, Suchard MA. 2008. Smooth skyride through a rough skyline: Bayesian coalescent-based inference of population dynamics. Mol Biol Evol 25:1459-1471. http://dx.doi.org/10.1093/molbev/msn090.
12. Drummond AJ, Suchard MA, Xie D, Rambaut A. 2012. Bayesian phylogenetics with BEAUti and the BEAST 1.7.Mol Biol Evol 29:1969-1973. http://dx.doi.org/10.1093/molbev/mss075.
13. Shapiro B, Rambaut A, Drummond AJ. 2006. Choosing appropriate substitution models for the phylogenetic analysis of protein-coding sequences.Mol Biol Evol 23:7-9. http://dx.doi.org/10.1093/molbev/msj021.
14. World Health Organization. 2006. Recommendations for influenza vaccine composition. Southern hemisphere: 2006. World Health Organization, Geneva, Switzerland. http://www.who.int/influenza/vaccines/vaccinerecommendations1/en/index8.html.
15. Eshaghi A, Duvvuri VR, Li A, Patel SN, Bastien N, Li Y, Low D, Gubbay JB. 2014. Genetic characterization of seasonal influenza A (H3N2) viruses in Ontario during 2010-2011 influenza season: high prevalence of mutations at antigenic sites. influenza Other Respir Viruses 8:250-257. http://dx.doi.org/10.1111/irv.12219.
16. Dudas G, Bedford T, Lycett S, Rambaut A. 2015. Reassortment between influenza B lineages and the emergence of a coadapted PB1-PB2-HA gene complex. Mol Biol Evol 32:162-172. http://dx.doi.org/10.1093/molbev/msu287.
17. Richard SA, Viboud C, Miller MA. 2010. Evaluation of Southern Hemisphere influenza vaccine recommendations. Vaccine 28:2693-2699. http://dx.doi.org/10.1016/j.vaccine.2010.01.053.
18. Heikkinen T, Ikonen N, Ziegler T. 2014. Impact of influenza B lineage levelmismatch between trivalent seasonal influenza vaccines and circulating viruses, 1999-2012.Clin InfectDis 59:1519-1524. http://dx.doi.org/10.1093/cid/ciu664.
19. Gupta V, Dawood FS, Muangchana C, Lan PT, Xeuatvongsa A, Sovann L, Olveda R, Cutter J, Oo KY, Ratih TS, Kheong CC, Kapella BK, Kitsutani P, Corwin A, Olsen SJ. 2012. influenza vaccination guidelines and vaccine sales in Southeast Asia: 2008-2011. PLoS One 7:e52842. http://dx.doi.org/10.1371/journal.pone.0052842.
20. World Health Organization. 15 Jun 2015. World Health Organization global health atlas. World Health Organization, Geneva, Switzerland. http://apps.who.int/globalatlas/dataQuery/default.asp.
21. Yu H, Huang J, Huai Yang Guan X, Klena J, Liu S, Peng Y, Yang H, Luo J, Zheng J, Chen M, Peng Z, Xiang N, Huo X, Xiao L, Jiang H, Chen H, Zhang Y, Xing X, Xu Z, Feng Z, Zhan F, Yang W, Uyeki TM, Wang Y, Varma JK. 2014. The substantial hospitalization burden of influenza in central China: surveillance of severe, acute respiratory infection, and influenza viruses, 2010-2012. influenza Other Respir Viruses 8:53-65. http://dx.doi.org/10.1111/irv.12205.
22. Cromer D, van Hoek AJ, Jit M, Edmunds WJ, Fleming D, Miller E. 2014. The burden of influenza in England by age and clinical risk group: a statistical analysis to inform vaccine policy. J Infect 68:363-371. http://dx.doi.org/10.1016/j.jinf.2013.11.013.
23. Silva ML, Perrier L, Späth H-M, Grog I, Mosnier A, Havet N, Cohen JM, IBGP Team. 2014. Economic burden of seasonal influenza B in France during winter 2010-2011. BMC Public Health 14:56. http://dx.doi.org/10.1186/1471-2458-14-56.
24. Harvala H, Smith D, Salvatierra K, Gunson R, von Wissmann B, Reynolds A, Frew C, MacLean A, Hunt A, Yirrell D, Simmonds P, McMenamin J, Templeton K. 2014. Burden of influenza B virus infections in Scotland in 2012/13 and epidemiological investigations between 2000 and 2012. Euro Surveill 19:pii 20903. http://www.eurosurveillance.org/ViewArticle.aspx?ArticleId 20903.Sam et al.