Interactions between fungal growth, substrate utilization, and enzyme production during solid substrate cultivation of Phanerochaete chrysosporium on cotton stalks

Bioprocess and Biosystems Engineering

Volumn 37, Issue 12, 2014, Pages 2463-2473

  Shi, Jian ^a   Chinn, Mari S ^a   Sharma Shivappa, Ratna R ^a  

^a North Carolina State University   (United States)

Author keywords

Bioethanol; Cotton stalk; Kinetics; Phanerochaete chrysosporium; Pretreatment; Solid substrate cultivation

Indexed keywords

BIOETHANOL; BIOLOGICAL SYSTEMS; COTTON; ENZYME KINETICS; ENZYMES; FUNGI; LIGNIN;

COTTON STALK; FUNGAL PRE TREATMENTS; LIGNINOLYTIC ENZYMES; LIGNOCELLULOSIC FEEDSTOCKS; PHANEROCHAETE CHRYSOSPORIUM; PRE-TREATMENT; SOLID SUBSTRATES; SUBSTRATE UTILIZATION;

SUBSTRATES;

CARBON DIOXIDE; CELLULASE; CELLULOSE; FUNGAL ENZYME; HEMICELLULOSE; LIGNIN; LIGNINOLYTIC ENZYME; ORGANIC NITROGEN; OXYGEN; UNCLASSIFIED DRUG;

ARTICLE; CONTROLLED STUDY; COTTON; DEGRADATION; ENZYME SUBSTRATE; ENZYME SYNTHESIS; FUNGAL BIOMASS; FUNGAL METABOLISM; FUNGUS CULTURE; FUNGUS GROWTH; MATHEMATICAL MODEL; MEASUREMENT ACCURACY; NONHUMAN; OXYGEN CONSUMPTION; PHANEROCHAETE; PREDICTION; PRIORITY JOURNAL; REDUCTION; SCALE UP; BIOMASS; BIOTECHNOLOGY; COMPUTER PROGRAM; ENZYMOLOGY; FERMENTATION; GOSSYPIUM; KINETICS; METABOLISM; PH; PROCEDURES; SYSTEMS BIOLOGY; THEORETICAL MODEL;

GOSSYPIUM HIRSUTUM; PHANEROCHAETE CHRYSOSPORIUM;

BIOMASS; BIOTECHNOLOGY; CELLULASE; FERMENTATION; GOSSYPIUM; HYDROGEN-ION CONCENTRATION; KINETICS; LIGNIN; MODELS, THEORETICAL; PHANEROCHAETE; SOFTWARE; SYSTEMS BIOLOGY;

EID: 84937965826     PISSN: 16157591     EISSN: 16157605     Source Type: Journal    
DOI: 10.1007/s00449-014-1224-3     Document Type: Article

References (60)

1. Aden A, Foust T (2009) Technoeconomic analysis of the dilute sulfuric acid and enzymatic hydrolysis process for the conversion of corn stover to ethanol. Cellulose 16:535-545
2. Wyman CE, Balan V, Dale BE, Elander RT, Falls M, Hames B et al (2011) Comparative data on effects of leading pretreatments and enzyme loadings and formulations on sugar yields from different switchgrass sources. Bioresour Technol 102:11052-11062
3. Shi J, Ebrik MA, Yang B, Garlock RJ, Balan V, Dale BE et al (2011) Application of cellulase and hemicellulase to pure xylan, pure cellulose, and switchgrass solids from leading pretreatments. Bioresour Technol 102:11080-11088
4. Hadar Y, Kerem Z, Gorodecki B (1993) Biodegradation of lignocellulosic agricultural wastes by Pleurotus ostreatus. J Biotechnol 30:133-139
5. Camarero S, Galletti GC, Martinez AT (1994) Preferential degradation of phenolic lignin units by 2 white-rot fungi. Appl Environ Microb 60:4509-4516
6. Sawada T, Nakamura Y, Kobayashi F, Kuwahara M, Watanabe T (1995) Effects of fungal pretreatment and steam explosion pretreatment on enzymatic saccharification of plant biomass. Biotechnol Bioeng 48:719-724
7. Watts S, Hamilton G, Keller J (2006) Two-stage thermophilic-mesophilic anaerobic digestion of waste activated sludge-from a biological nutrient removal plant. Water Sci Technol 53:149-157
8. Shi J, Chinn MS, Sharma-Shivappa RR (2008) Microbial pretreatment of cotton stalks by solid state cultivation of Phanerochaete chrysosporium. Bioresour Technol 99:6556-6564
9. Bak JS, Ko JK, Choi IG, Park YC, Seo JH, Kim KH (2009) Fungal pretreatment of lignocellulose by Phanerochaete chrysosporium to produce ethanol from rice straw. Biotechnol Bioeng 104:471-482
10. Wan C, Li Y (2011) Effectiveness of microbial pretreatment by Ceriporiopsis subvermispora on different biomass feedstocks. Bioresour Technol 102:7507-7512
11. Wan C, Li Y (2012) Fungal pretreatment of lignocellulosic biomass. Biotechnol Adv 30:1447-1457
12. Kirk TK, Farrell RL (1987) Enzymatic combustion: the microbial-degradation of lignin. Ann Rev Microb 41:465-505
13. Kirk TK, Schultz E, Connors WJ, Lorenz LF, Zeikus JG (1978) Influence of culture parameters on lignin metabolism by Phanerochaete chrysosporium. Arch Microb 117:277-285
14. Tien M, Kirk TK (1988) Lignin peroxidase of Phanerochaete chrysosporium. Methods Enzymol 161:238-249
15. Barclay CD, Legge RL, Farquhar GF (1993) Modeling the growth-kinetics of Phanerochaete chrysosporium in submerged static culture. Appl Environ Microb 59:1887-1892
16. Couto SR, Ratto M (1998) Effect of veratryl alcohol and manganese (IV) oxide on ligninolytic activity in semi solid cultures of Phanerochaete chrysosporium. Biodegradation 9:143-150
17. Michel FC, Grulke EA, Reddy CA (1992) Determination of the respiration kinetics for mycelial pellets of Phanerochaete chrysosporium. Appl Environ Microb 58:1740-1745
18. Shi J, Sharma-Shivappa RR, Chinn MS (2012) Interactions between fungal growth, substrate utilization and enzyme production during shallow stationary cultivation of Phanerochaete chrysosporium on cotton stalks. Enzym Microb Technol 51:1-8
19. Mitchell RB, Vogel KP, Klopfenstein TJ, Anderson BE, Masters RA (2005) Grazing evaluation of big bluestems bred for improved forage yield and digestibility. Crop Sci 45:2288-2292
20. Pandey A (2003) Solid-state fermentation. Biochem Eng J 13:81-84
21. Matcham SE, Jordan BR, Wood DA (1985) Estimation of fungal biomass in a solid substrate by 3 independent methods. Appl Microb Biotechnol 21:108-112
22. Desgranges C, Vergoignan C, Georges M, Durand A (1991) Biomass estimation in solid-state fermentation 1. Manual biochemical methods. Appl Microb Biotechnol 35:200-205
23. Desgranges C, Georges M, Vergoignan C, Durand A (1991) Biomass estimation in solid-state fermentation 2. Online measurements. Appl Microb Biotechnol 35:206-209
24. Terebiznik MR, Pilosof AMR (1999) Biomass estimation in solid state fermentation by modeling dry matter weight loss. Biotechnol Tech 13:215-219
25. Otjen L, Blanchette RA (1985) Selective delignification of aspen wood blocks invitro by 3 white rot basidiomycetes. Appl Environ Microb 50:568-572
26. Sluiter JB, Ruiz RO, Scarlata CJ, Sluiter AD, Templeton DW (2010) Compositional analysis of lignocellulosic feedstocks 1. Review and description of methods. J Agric Food Chem 58:9043-9053
27. Chinn MS (2003) Solid substrate cultivation of anaerobic thermophilic bacteria for the production of cellulolytic enzymes, PhD dissertation. University of Kentucky, Lexington
28. EPA Manual 351.2 (1979) Determination of total kjeldahl nitrogen by semi-automated colorimetry. Report No.: EPA 60014-79-020
29. Smits JP, Rinzema A, Tramper J, Schlosser EE, Knol W (1996) Accurate determination of process variables in a solid-state fermentation system. Process Biochem 31:669-678
30. Shi J, Sharma-Shivappa RR, Chinn M, Dean RA, Shivappa RB (2007) Challenges in quantification of ligninolytic enzymes from Phanerochaete chrysosporium cultivation for pretreatment of cotton stalks. Trans ASABE 50:2347-2354
31. Sangsurasak P, Nopharatana M, Mitchell DA (1996) Mathematical modeling of the growth of filamentous fungi in solid state fermentation. J Sci Ind Res 55:333-342
32. Lenz J, Hofer M, Krasenbrink JB, Holker U (2004) A survey of computational and physical methods applied to solid-state fermentation. Appl Microb Biotechnol 65:9-17
33. Pearl R, Reed LJ (1920) On the rate of growth of the population of the United States since 1790 and its mathematical representation. PNAS 6:275-288
34. Viccini G, Mitchell DA, Boit SD, Gern JC, da Rosa AS, Costa RM et al (2001) Analysis of growth kinetic profiles in solid-state fermentation. Food Technol Biotechnol 39:271-294
35. Monod J (1949) The growth of bacterial cultures. Ann Rev Microb 3:371-394
36. Tsao GT, Hanson TP (1975) Extended monod equation for batch cultures with multiple exponential phases. Biotechnol Bioeng 17:1591-1598
37. Pirt SJ (1965) Maintenance energy of bacteria in growing cultures. Proc R Soc Ser B 163:224-231
38. Pirt SJ, Righelat RC (1967) Effect of growth rate on synthesis of penicillin by Penicillium chrysogenum in batch and chemostat cultures. Appl Microb 15:1284-1290
39. Mitchell DA, von Meien OF, Krieger N, Dalsenter FDH (2004) A review of recent developments in modeling of microbial growth kinetics and intraparticle phenomena in solid-state fermentation. Biochem Eng J 17:15-26
40. Luedeking R, Piret EL (1959) Transient and steady states in continuous fermentation: theory and experiment. J Biochem Microb Technol Eng 1:431-459
41. Schmidt H, Jirstrand M (2006) Systems biology toolbox for MATLAB: a computational platform for research in systems biology. Bioinformatics 22:514-515
42. Bellon-Maurel W, Orliac O, Christen P (2003) Sensors and measurements in solid state fermentation: a review. Process Biochem 38:881-896
43. Laukevics JJ, Apsite AF, Viesturs UE, Tengerdy RP (1984) Solid substrate fermentation of wheat straw to fungal protein. Biotechnol Bioeng 26:1465-1474
44. Nishio N, Tai K, Nagai S (1979) Hydrolase production by Aspergillus niger in solid-state cultivation. E J Appl Microb Biotechnol 8:263-270
45. Okazaki N, Sugama S, Tanaka T (1980) Growth of Koji mold on the surface of steamed rice grains. 9. Mathematical-model for surface culture of Koji mold. J Ferment Technol 58:471-476
46. Dorta B, Bosch A, Arcas J, Ertola R (1994) Water-balance in solid-state fermentation without forced aeration. Enzym Microb Technol 16:562-565
47. Ikasari L, Mitchell DA (1998) Oxygen uptake kinetics during solid state fermentation with Rhizopus oligosporus. Biotechnol Tech 12:171-175
48. May BA, VanderGheynst JS, Rumsey T (2006) The kinetics of Lagenidium giganteum growth in liquid and solid cultures. J Appl Microb 101:807-814
49. Levonenmunoz E, Bone DH (1985) Effect of different gas environments on bench-scale solid-state fermentation of oat straw by white-rot fungi. Biotechnol Bioeng 27:382-387
50. Atkinson CF, Jones DD, Gauthier JJ (1997) Microbial activities during composting of pulp and paper-mill primary solids. W J Microb Biotechnol 13:519-525
51. Kirk TK, Connors WJ, Zeikus JG (1976) Requirement for a growth substrate during lignin decomposition by 2 wood-rotting fungi. Appl Environ Microb 32:192-194
52. Ander P, Eriksson KE (1975) Influence of carbohydrates on lignin degradation by white-rot fungus Sporotrichum pulverulentum. Sven Papperstidning Nordisk Cellul 78:643-652
53. Ntwampe SKO, Sheldon MS (2006) Quantifying growth kinetics of Phanerochaete chrysosporium immobilised on a vertically orientated polysulphone capillary membrane: biofilm development and substrate consumption. Biochem Eng J 30:147-151
54. Sheldon MS, Mohammed K, Ntwampe SKO (2008) An investigation of biphasic growth kinetics for Phanerochaete chrysosporium (BKMF-1767) immobilised in a membrane gradostat reactor using flow-cells. Enzym Microb Technol 42:353-361
55. Bothwell MK, Wilson DB, Irwin DC, Walker LP (1997) Binding reversibility and surface exchange of Thermomonospora fusca E-3 and E-5 and Trichoderma reesei CBHI. Enzym Microb Technol 20:411-417
56. Silverstein RA, Chen Y, Sharma-Shivappa RR, Boyette MD, Osborne J (2007) A comparison of chemical pretreatment methods for improving saccharification of cotton stalks. Bioresour Technol 98:3000-3011
57. Shi J, Sharma-Shivappa RR, Chinn M, Howell N (2009) Effect of microbial pretreatment on enzymatic hydrolysis and fermentation of cotton stalks for ethanol production. Biomass Bioenergy 33:88-96
58. Kirk TK (1986) Recent progress in lignin biodegradation research. Symbiosis 2:111
59. Kerem Z, Friesem D, Hadar Y (1992) Lignocellulose degradation during solid-state fermentation: Pleurotus ostreatus versus Phanerochaete chrysosporium. Appl Environ Microb 58:1121-1127
60. Taniguchi M, Suzuki H, Watanabe D, Sakai K, Hoshino K, Tanaka T (2005) Evaluation of pretreatment with Pleurotus ostreatus for enzymatic hydrolysis of rice straw. J Biosci Bioeng 100:637-643