Dynamics of the Streptococcus gordonii transcriptome in response to medium, salivary α-amylase, and starch

Applied and Environmental Microbiology

Volumn 81, Issue 16, 2015, Pages 5363-5374

  Haase, Elaine M ^a   Feng, Xianghui ^a,b   Pan, Jiachuan ^a   Miecznikowski, Jeffrey C ^a   Scannapieco, Frank A ^a  

^a UNIVERSITY AT BUFFALO   (United States)

^b PEKING UNIVERSITY SCHOOL AND HOSPITAL OF STOMATOLOGY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; AMYLASES; BACTERIA; ENVIRONMENTAL REGULATIONS; ENZYMES; FATTY ACIDS; FLAVORS; GENES; GLUCOSE; NUTRITION; PLANTS (BOTANY); POLYMERASE CHAIN REACTION; POLYSACCHARIDES; PROTEINS; RNA; SIGNAL TRANSDUCTION; STARCH; TRANSCRIPTION;

ENVIRONMENTAL CONDITIONS; FATTY ACID SYNTHESIS; GROWTH CONDITIONS; METHIONINE SULFOXIDE REDUCTASE; REVERSE TRANSCRIPTION PCR; SALIVARY ALPHA AMYLASE; STREPTOCOCCUS GORDONII; TRANSCRIPTIONAL PROFILING;

GENE EXPRESSION;

BACTERIUM; CELLS AND CELL COMPONENTS; ENVIRONMENTAL CONDITIONS; ENZYME ACTIVITY; FATTY ACID; GENE EXPRESSION; GROWTH RATE; PEPTIDE; PROTEIN; SALIVA; STARCH; TOOTH;

STREPTOCOCCUS GORDONII;

ABPA PROTEIN, STREPTOCOCCUS GORDONII; ALPHA AMYLASE SALIVA ISOENZYME; CULTURE MEDIUM; OUTER MEMBRANE PROTEIN; STARCH;

COMPARATIVE STUDY; CULTURE MEDIUM; DRUG EFFECTS; GENE DELETION; GENE EXPRESSION PROFILING; GENETICS; METABOLISM; REAL TIME POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS; STREPTOCOCCUS GORDONII;

BACTERIAL OUTER MEMBRANE PROTEINS; CULTURE MEDIA; GENE DELETION; GENE EXPRESSION PROFILING; REAL-TIME POLYMERASE CHAIN REACTION; SALIVARY ALPHA-AMYLASES; SEQUENCE ANALYSIS, RNA; STARCH; STREPTOCOCCUS GORDONII;

EID: 84937847828     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.01221-15     Document Type: Article

References (43)

1. Scannapieco FA, Solomon L, Wadenya RO. 1994. Emergence in human dental plaque and host distribution of amylase-binding streptococci. J Dent Res 73:1627-1635.
2. Robyt JF. 2008. Starch: structure, properties, chemistry, and enzymology, p 1437-1472. In Fraser-Ried BO, Tatsuta K, Thiem J, Cote GL (ed), Glycoscience. Springer-Verlag, Berlin, Germany.
3. Douglas CW. 1983. The binding of human salivary alpha-amylase by oral strains of streptococcal bacteria. Arch Oral Biol 28:567-573. http://dx.doi .org/10.1016/0003-9969(83)90003-1.
4. Douglas CW. 1990. Characterization of the alpha-amylase receptor of Streptococcus gordonii NCTC 7868. J Dent Res 69:1746-1752. http://dx .doi.org/10.1177/00220345900690110701.
5. Kilian M, Nyvad B. 1990. Ability to bind salivary alpha-amylase discriminates certain viridans group streptococcal species. J Clin Microbiol 28:2576-2577.
6. Scannapieco FA, Bergey EJ, Reddy MS, Levine MJ. 1989. Characterization of salivary alpha-amylase binding to Streptococcus sanguis. Infect Immun 57:2853-2863.
7. Douglas CW, Heath J, Gwynn JP. 1992. Enzymic activity of salivary amylase when bound to the surface of oral streptococci. FEMS Microbiol Lett 71:193-197.
8. Rogers JD, Palmer RJ, Jr, Kolenbrander PE, Scannapieco FA. 2001. Role of Streptococcus gordonii amylase-binding protein A in adhesion to hydroxyapatite, starch metabolism, and biofilm formation. Infect Immun 69:7046-7056. http://dx.doi.org/10.1128/IAI.69.11.7046-7056.2001.
9. Scannapieco FA, Bhandary K, Ramasubbu N, Levine MJ. 1990. Structural relationship between the enzymatic and streptococcal binding sites of human salivary alpha-amylase. Biochem Biophys Res Commun 173:1109-1115. http://dx.doi.org/10.1016/S0006-291X(05)80900-3.
10. Scannapieco FA, Haraszthy GG, Cho MI, Levine MJ. 1992. Characterization of an amylase-binding component of Streptococcus gordonii G9B. Infect Immun 60:4726-4733.
11. Li L, Tanzer JM, Scannapieco FA. 2002. Identification and analysis of the amylase-binding protein B (AbpB) and gene (abpB) from Streptococcus gordonii. FEMS Microbiol Lett 212:151-157. http://dx.doi.org/10.1111/j .1574-6968.2002.tb11259.x.
12. Tanzer JM, Baranowski LK, Rogers JD, Haase EM, Scannapieco FA. 2001. Oral colonization and cariogenicity of Streptococcus gordonii in specific pathogen-free TAN:SPFOM(OM)BR rats consuming starch or sucrose diets. Arch Oral Biol 46:323-333. http://dx.doi.org/10.1016/S0003-9969(00)00126-6.
13. Nikitkova AE, Haase EM, Vickerman MM, Gill SR, Scannapieco FA. 2012. Response of fatty acid synthesis genes to the binding of human salivary amylase by Streptococcus gordonii. Appl Environ Microbiol 78:1865-1875. http://dx.doi.org/10.1128/AEM.07071-11.
14. Nikitkova AE, Haase EM, Scannapieco FA. 2012. Effect of starch and amylase on the expression of amylase-binding protein A in Streptococcus gordonii. Mol Oral Microbiol 27:284-294. http://dx.doi.org/10.1111/j .2041-1014.2012.00644.x.
15. Marioni JC, Mason CE, Mane SM, Stephens M, Gilad Y. 2008. RNASeq:an assessment of technical reproducibility and comparison with gene expression arrays. Genome Res 18:1509-1517. http://dx.doi.org/10.1101/gr.079558.108.
16. van Vliet AH. 2010. Next generation sequencing of microbial transcriptomes:challenges and opportunities. FEMS Microbiol Lett 302:1-7. http://dx.doi.org/10.1111/j.1574-6968.2009.01767.x.
17. Cattoir V, Narasimhan G, Skurnik D, Aschard H, Roux D, Ramphal R, Jyot J, Lory S. 2013. Transcriptional response of mucoid Pseudomonas aeruginosa to human respiratory mucus. mBio 3:e00410-12. http://dx.doi .org/10.1128/mBio.00410-12.
18. Mandlik A, Livny J, Robins WP, Ritchie JM, Mekalanos JJ, Waldor MK. 2011. RNA-Seq-based monitoring of infection-linked changes in Vibrio cholerae gene expression. Cell Host Microbe 10:165-174. http://dx.doi.org /10.1016/j.chom.2011.07.007.
19. Scherr TD, Roux CM, Hanke ML, Angle A, Dunman PM, Kielian T. 2013. Global transcriptome analysis of Staphylococcus aureus biofilms in response to innate immune cells. Infect Immun 81:4363-4376. http://dx .doi.org/10.1128/IAI.00819-13.
20. Tardif G, Sulavik MC, Jones GW, Clewell DB. 1989. Spontaneous switching of the sucrose-promoted colony phenotype in Streptococcus sanguis. Infect Immun 57:3945-3948.
21. Tanzer JM, Thompson A, Sharma K, Vickerman MM, Haase EM, Scannapieco FA. 2012. Streptococcus mutans out-competes Streptococcus gordonii in vivo. J Dent Res 91:513-519. http://dx.doi.org/10.1177/0022034512442894.
22. Loo CY, Corliss DA, Ganeshkumar N. 2000. Streptococcus gordonii biofilm formation: identification of genes that code for biofilm phenotypes. J Bacteriol 182:1374-1382. http://dx.doi.org/10.1128/JB.182.5.1374-1382.2000.
23. Macrina FL, Tobian JA, Jones KR, Evans RP. 1982. Molecular cloning in the streptococci, p 195-210. In Hollander A, DeMoss R, Kaplan S, Konisky J, Savage D, Wolfe R (ed), Genetic engineering of microorganisms for chemicals. Plenum Publishing Corp, New York, NY.
24. Lawson JW, Gooder H. 1970. Growth and development of competence in the group H streptococci. J Bacteriol 102:820-825.
25. Sulavik MC, Tardif G, Clewell DB. 1992. Identification of a gene, rgg, which regulates expression of glucosyltransferase and influences the Spp phenotype of Streptococcus gordonii Challis. J Bacteriol 174:3577-3586.
26. Ehrenfeld EE, Clewell DB. 1987. Transfer functions of the Streptococcus faecalis plasmid pAD1: organization of plasmid DNA encoding response to sex pheromone. J Bacteriol 169:3473-3481.
27. Bradway SD, Bergey EJ, Jones PC, Levine MJ. 1989. Oral mucosal pellicle: adsorption and transpeptidation of salivary components to buccal epithelial cells. Biochem J 261:887-896.
28. Jacobsen N, Melvaer KL, Hensten-Pettersen A. 1972. Some properties of salivary amylase: a survey of the literature and some observations. J Dent Res 51:381-388. http://dx.doi.org/10.1177/00220345720510022501.
29. Chaudhuri B, Paju S, Haase EM, Vickerman MM, Tanzer JM, Scannapieco FA. 2008. Amylase-binding protein B of Streptococcus gordonii is an extracellular dipeptidyl-peptidase. Infect Immun 76:4530-4537. http://dx.doi.org/10.1128/IAI.00186-08.
30. Andrews JM. 2001. Determination of minimum inhibitory concentrations. J Antimicrob Chemother 48(Suppl 1):S5-S16.
31. Chen CY, Nace GW, Irwin PL. 2003. A 6×6 drop plate method for simultaneous colony counting and MPN enumeration of Campylobacter jejuni, Listeria monocytogenes, and Escherichia coli. J Microbiol Methods 55:475-479. http://dx.doi.org/10.1016/S0167-7012(03)00194-5.
32. Maddi A, Haase EM, Scannapieco FA. 2014. Mass spectrometic analysis of whole secretome and amylase-precipitated secretome proteins from Streptococcus gordonii. J Proteomics Bioinform 7:287-295.
33. Rogers JD, Scannapieco FA. 2001. RegG, a CcpA homolog, participates in regulation of amylase-binding protein A gene (abpA) expression in Streptococcus gordonii. J Bacteriol 183:3521-3525. http://dx.doi.org/10.1128/JB .183.11.3521-3525.2001.
34. Liang X, Chen Y, Wu H. 2011. Sortase B assemble amylase-binding protein A to streptococcal cell surface, p 72. 89th Gen Session Int Assoc Dent Res IADR, San Diego, CA.
35. Su YA, He P, Clewell DB. 1992. Characterization of the tet(M) determinant of Tn916: evidence for regulation by transcription attenuation. Antimicrob Agents Chemother 36:769-778. http://dx.doi.org/10.1128/AAC .36.4.769.
36. Pallen MJ, Lam AC, Antonio M, Dunbar K. 2001. An embarrassment of sortases: a richness of substrates?. Trends Microbiol 9:97-102. http://dx .doi.org/10.1016/S0966-842X(01)01956-4.
37. Ton-That H, Marraffini LA, Schneewind O. 2004. Protein sorting to the cell wall envelope of Gram-positive bacteria. Biochim Biophys Acta 1694:269-278. http://dx.doi.org/10.1016/j.bbamcr.2004.04.014.
38. Sato Y, Okamoto-Shibayama K, Azuma T. 2013. The malQ gene is essential for starch metabolism in Streptococcus mutans. J Oral Microbiol http://dx.doi.org/10.3402/jom.v5i0.21285.
39. Kotrba P, Inui M, Yukawa H. 2001. Bacterial phosphotransferase system (PTS) in carbohydrate uptake and control of carbon metabolism. J Biosci Bioeng 92:502-517. http://dx.doi.org/10.1016/S1389-1723(01)80308-X.
40. Kilic AO, Tao L, Zhang Y, Lei Y, Khammanivong A, Herzberg MC. 2004. Involvement of Streptococcus gordonii beta-glucoside metabolism systems in adhesion, biofilm formation, and in vivo gene expression. J Bacteriol 186:4246-4253. http://dx.doi.org/10.1128/JB.186.13.4246-4253.2004.
41. Chaudhuri B, Rojek J, Vickerman MM, Tanzer JM, Scannapieco FA. 2007. Interaction of salivary alpha-amylase and amylase-binding-protein A (AbpA) of Streptococcus gordonii with glucosyltransferase of S. gordonii and Streptococcus mutans.BMCMicrobiol 7:60. http://dx.doi.org/10.1186/1471-2180-7-60.
42. Lengeler JW, Jahreis K. 2009. Bacterial PEP-dependent carbohydrate: phosphotransferase systems couple sensing and global control mechanisms. Contrib Microbiol 16:65-87. http://dx.doi.org/10.1159/000219373.
43. Stock AM, Robinson VL, Goudreau PN. 2000. Two-component signal transduction. Annu Rev Biochem 69:183-215. http://dx.doi.org/10.1146/annurev.biochem.69.1.183.