Heterotic Haplotype Capture: Precision breeding for hybrid performance

Trends in Plant Science

Volumn 20, Issue 7, 2015, Pages 410-413

  Snowdon, Rod J ^a   Abbadi, Amine ^b   Kox, Tobias ^c   Schmutzer, Thomas ^d   Leckband, Gunhild ^e  

^a JUSTUS LIEBIG UNIVERSITY   (Germany)

^b Hohenlieth Hof   (Germany)

^c UNIVERSITY OF BONN   (Germany)

^d LEIBNIZ INSTITUTE OF PLANT GENETICS AND CROP PLANT RESEARCH IPK   (Germany)

^e German Seed Alliance GmbH   (Germany)

Author keywords

Genetic diversity; Genome sequencing; Genomic prediction; Heterosis; Plant breeding

Indexed keywords

ADAPTATION; CLIMATE; HAPLOTYPE; HETEROZYGOTE; HYBRIDIZATION; PLANT BREEDING; PLANT CHROMOSOME; POLYPLOIDY;

ADAPTATION, PHYSIOLOGICAL; CHROMOSOMES, PLANT; CLIMATE; HAPLOTYPES; HETEROZYGOTE; HYBRIDIZATION, GENETIC; PLANT BREEDING; POLYPLOIDY;

EID: 84937526766     PISSN: 13601385     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.tplants.2015.04.013     Document Type: Short Survey

References (16)

1. Chalhoub B., et al. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science 2014, 346:950-953.
2. Qian L., et al. Sub-genomic variation patterns as a signature of breeding in rapeseed. BMC Genomics 2014, 15:1170.
3. Edwards D., et al. Accessing complex crop genomes with next-generation sequencing. Theor. Appl. Genet. 2013, 126:1-11.
4. Yu J., et al. Genetic design and statistical power of nested association mapping in maize. Genetics 2008, 178:539-551.
5. McMullen M.D., et al. Genetic properties of the maize nested association mapping population. Science 2009, 325:737-740.
6. Allender C.J., King G.J. Origins of the amphiploid species Brassica napus L. investigated by chloroplast and nuclear molecular markers. BMC Plant Biol. 2010, 10:54.
7. Leflon M., et al. Crossovers get a boost in Brassica allotriploid and allotetraploid hybrids. Plant Cell 2010, 22:2253-2264.
8. Schnable P.S., Springer N.M. Progress toward understanding heterosis in crop plants. Annu. Rev. Plant Biol. 2013, 64:71-88.
9. Zhou G., et al. Genetic composition of yield heterosis in an elite rice hybrid. Proc. Natl. Acad. Sci. U.S.A. 2012, 109:15847-15852.
10. Li H., et al. The Sequence Alignment/Map format and SAMtools. Bioinformatics 2009, 25:2078-2079.
11. Danecek P., et al. The Variant Call Format and VCFtools. Bioinformatics 2011, 27:2156-2158.
12. Wang W., et al. FaSD-somatic: a fast and accurate somatic SNV detection algorithm for cancer genome sequencing data. Bioinformatics 2014, 30:2498-2500.
13. Garrison, E. and Marth, G. (2012) Haplotype-based variant detection from short-read sequencing. arXiv:1207.3907.
14. Xiong Z., et al. Homoeologous shuffling and chromosome compensation maintain genome balance in resynthesized allopolyploid Brassica napus. Proc. Natl. Acad. Sci. U.S.A. 2011, 108:7908-7913.
15. De La Fuente G.N., et al. Accelerating plant breeding. Trends Plant Sci. 2013, 18:667-672.
16. Desta Z.A., Ortiz R. Genomic selection: genome-wide prediction in plant improvement. Trends Plant Sci. 2014, 19:592-601.