메뉴 건너뛰기




Volumn 21, Issue 8, 2015, Pages 1330-1338

Phylogeography of influenza A(H3N2) virus in Peru, 2010–2012

Author keywords

[No Author keywords available]

Indexed keywords

HEMAGGLUTININ; INFLUENZA VIRUS HEMAGGLUTININ;

EID: 84937394367     PISSN: 10806040     EISSN: 10806059     Source Type: Journal    
DOI: 10.3201/eid2108.150084     Document Type: Article
Times cited : (20)

References (37)
  • 1
    • 84897552314 scopus 로고    scopus 로고
    • Pandemic preparedness and response-lessons from the H1N1 influenza of 2009
    • Fineberg HV. Pandemic preparedness and response-lessons from the H1N1 influenza of 2009. N Engl J Med. 2014;370:1335-42. http://dx.doi.org/10.1056/NEJMra1208802
    • (2014) N Engl J Med. , vol.370 , pp. 1335-1342
    • Fineberg, H.V.1
  • 3
    • 70449372461 scopus 로고    scopus 로고
    • Preliminary population-based epidemiological and clinical data on 2009 pandemic H1N1 influenza A (pH1N1) from Lima, Peru
    • Tinoco Y, Razuri H, Ortiz EJ, Gomez J, Widdowson MA, Uyeki T, et al. Preliminary population-based epidemiological and clinical data on 2009 pandemic H1N1 influenza A (pH1N1) from Lima, Peru. Influenza Other Respir Viruses. 2009;3:253-6. http://dx.doi.org/10.1111/j.1750-2659.2009.00111.x
    • (2009) Influenza Other Respir Viruses. , vol.3 , pp. 253-256
    • Tinoco, Y.1    Razuri, H.2    Ortiz, E.J.3    Gomez, J.4    Widdowson, M.A.5    Uyeki, T.6
  • 4
    • 33646235618 scopus 로고    scopus 로고
    • Influenza in tropical regions
    • Viboud C, Alonso WJ, Simonsen L. Influenza in tropical regions. PLoS Med. 2006;3:e89. http://dx.doi.org/10.1371/journal.pmed.0030089
    • (2006) PLoS Med. , vol.3
    • Viboud, C.1    Alonso, W.J.2    Simonsen, L.3
  • 6
    • 51449099282 scopus 로고    scopus 로고
    • Influenza vaccine strain selection and recent studies on the global migration of seasonal influenza viruses
    • Russell CA, Jones TC, Barr IG, Cox NJ, Garten RJ, Gregory V, et al. Influenza vaccine strain selection and recent studies on the global migration of seasonal influenza viruses. Vaccine. 2008;26(Suppl 4):D31-4. http://dx.doi.org/10.1016/j.vaccine.2008.07.078
    • (2008) Vaccine. , vol.26 , pp. D31-D34
    • Russell, C.A.1    Jones, T.C.2    Barr, I.G.3    Cox, N.J.4    Garten, R.J.5    Gregory, V.6
  • 7
    • 82755190600 scopus 로고    scopus 로고
    • Temporally structured metapopulation dynamics and persistence of influenza A H3N2 virus in humans
    • Bahl J, Nelson MI, Chan KH, Chen R, Vijaykrishna D, Halpin RA, et al. Temporally structured metapopulation dynamics and persistence of influenza A H3N2 virus in humans. Proc Natl Acad Sci U S A. 2011;108:19359-64. http://dx.doi.org/10.1073/pnas.1109314108
    • (2011) Proc Natl Acad Sci U S A. , vol.108 , pp. 19359-19364
    • Bahl, J.1    Nelson, M.I.2    Chan, K.H.3    Chen, R.4    Vijaykrishna, D.5    Halpin, R.A.6
  • 8
    • 84887000074 scopus 로고    scopus 로고
    • Migration and persistence of human influenza A viruses, Vietnam, 2001-2008
    • Le MQ, Lam HM, Cuong VD, Lam TT, Halpin RA, Wentworth DE, et al. Migration and persistence of human influenza A viruses, Vietnam, 2001-2008. Emerg Infect Dis. 2013;19:1756-65. http://dx.doi.org/10.3201/eid1911.130349
    • (2013) Emerg Infect Dis. , vol.19 , pp. 1756-1765
    • Le, M.Q.1    Lam, H.M.2    Cuong, V.D.3    Lam, T.T.4    Halpin, R.A.5    Wentworth, D.E.6
  • 9
    • 84872976710 scopus 로고    scopus 로고
    • Epidemiological dynamics and phylogeography of influenza virus in southern China
    • Cheng X, Tan Y, He M, Lam TT, Lu X, Viboud C, et al. Epidemiological dynamics and phylogeography of influenza virus in southern China. J Infect Dis. 2013;207:106-14. http://dx.doi.org/ 10.1093/infdis/jis526
    • (2013) J Infect Dis. , vol.207 , pp. 106-114
    • Cheng, X.1    Tan, Y.2    He, M.3    Lam, T.T.4    Lu, X.5    Viboud, C.6
  • 10
    • 50949115082 scopus 로고    scopus 로고
    • Seasonality of influenza A(H3N2) virus: A Hong Kong perspective (1997-2006)
    • Tang JW, Ngai KL, Lam WY, Chan PK. Seasonality of influenza A(H3N2) virus: a Hong Kong perspective (1997-2006). PLoS ONE. 2008;3:e2768. http://dx.doi.org/10.1371/journal.pone.0002768
    • (2008) PLoS ONE. , vol.3
    • Tang, J.W.1    Ngai, K.L.2    Lam, W.Y.3    Chan, P.K.4
  • 11
    • 42349094829 scopus 로고    scopus 로고
    • The global circulation of seasonal influenza A (H3N2) viruses
    • Russell CA, Jones TC, Barr IG, Cox NJ, Garten RJ, Gregory V, et al. The global circulation of seasonal influenza A (H3N2) viruses. Science. 2008;320:340-6. http://dx.doi.org/10.1126/science.1154137
    • (2008) Science. , vol.320 , pp. 340-346
    • Russell, C.A.1    Jones, T.C.2    Barr, I.G.3    Cox, N.J.4    Garten, R.J.5    Gregory, V.6
  • 12
    • 84902980670 scopus 로고    scopus 로고
    • The evolutionary dynamics of influenza A and B viruses in the tropical city of Managua, Nicaragua
    • Nelson MI, Balmaseda A, Kuan G, Saborio S, Lin X, Halpin RA, et al. The evolutionary dynamics of influenza A and B viruses in the tropical city of Managua, Nicaragua. Virology. 2014;462-463:81-90. http://dx.doi.org/10.1016/j.virol.2014.05.025
    • (2014) Virology. , vol.462-463 , pp. 81-90
    • Nelson, M.I.1    Balmaseda, A.2    Kuan, G.3    Saborio, S.4    Lin, X.5    Halpin, R.A.6
  • 13
    • 34547485985 scopus 로고    scopus 로고
    • Seasonality of influenza in Brazil: A traveling wave from the Amazon to the subtropics
    • Alonso WJ, Viboud C, Simonsen L, Hirano EW, Daufenbach LZ, Miller MA. Seasonality of influenza in Brazil: a traveling wave from the Amazon to the subtropics. Am J Epidemiol. 2007;165:1434-42. http://dx.doi.org/10.1093/aje/kwm012
    • (2007) Am J Epidemiol. , vol.165 , pp. 1434-1442
    • Alonso, W.J.1    Viboud, C.2    Simonsen, L.3    Hirano, E.W.4    Daufenbach, L.Z.5    Miller, M.A.6
  • 16
    • 0034051550 scopus 로고    scopus 로고
    • Global epidemiology of influenza: Past and present
    • Cox NJ, Subbarao K. Global epidemiology of influenza: past and present. Annu Rev Med. 2000;51:407-21. http://dx.doi.org/ 10.1146/annurev.med.51.1.407
    • (2000) Annu Rev Med. , vol.51 , pp. 407-421
    • Cox, N.J.1    Subbarao, K.2
  • 18
    • 84859520338 scopus 로고    scopus 로고
    • Two years after pandemic influenza A/2009/H1N1: What have we learned?
    • Cheng VC, To KK, Tse H, Hung IF, Yuen KY. Two years after pandemic influenza A/2009/H1N1: what have we learned? Clin Microbiol Rev. 2012;25:223-63. http://dx.doi.org/10.1128/CMR.05012-11
    • (2012) Clin Microbiol Rev. , vol.25 , pp. 223-263
    • Cheng, V.C.1    To, K.K.2    Tse, H.3    Hung, I.F.4    Yuen, K.Y.5
  • 20
    • 70349272201 scopus 로고    scopus 로고
    • Single-reaction genomic amplification accelerates sequencing and vaccine production for classical and swine origin human influenza a viruses
    • Zhou B, Donnelly ME, Scholes DT, St George K, Hatta M, Kawaoka Y, et al. Single-reaction genomic amplification accelerates sequencing and vaccine production for classical and swine origin human influenza a viruses. J Virol. 2009;83:10309-13. http://dx.doi.org/10.1128/JVI.01109-09
    • (2009) J Virol. , vol.83 , pp. 10309-10313
    • Zhou, B.1    Donnelly, M.E.2    Scholes, D.T.3    St George, K.4    Hatta, M.5    Kawaoka, Y.6
  • 21
    • 84864560782 scopus 로고    scopus 로고
    • Influenza A virus molecular virology techniques
    • Zhou B, Wentworth DE. Influenza A virus molecular virology techniques. Methods Mol Biol. 2012;865:175-92. http://dx.doi.org/ 10.1007/978-1-61779-621-0_11
    • (2012) Methods Mol Biol. , vol.865 , pp. 175-192
    • Zhou, B.1    Wentworth, D.E.2
  • 22
    • 84969949123 scopus 로고    scopus 로고
    • May 10, [cited 2013 Nov 1]
    • White paper on reference assembly in CLC Assembly Cell 3.0. May 10, 2010 [cited 2013 Nov 1]. http://www.clcbio.com/wp-content/uploads/2012/09/white_paper_on_reference_assembly_on_the_CLC_Assembly_Cell.pdf
    • (2010) White paper on reference assembly in CLC Assembly Cell 3.0.
  • 23
    • 84867723807 scopus 로고    scopus 로고
    • Influenza Research Database: An integrated bioinformatics resource for influenza research and surveillance
    • Squires RB, Noronha J, Hunt V, Garcia-Sastre A, Macken C, Baumgarth N, et al. Influenza Research Database: an integrated bioinformatics resource for influenza research and surveillance. Influenza Other Respir Viruses. 2012;6:404-16. http://dx.doi.org/ 10.1111/j.1750-2659.2011.00331.x
    • (2012) Influenza Other Respir Viruses. , vol.6 , pp. 404-416
    • Squires, R.B.1    Noronha, J.2    Hunt, V.3    Garcia-Sastre, A.4    Macken, C.5    Baumgarth, N.6
  • 24
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. 2011;28:2731-9. http://dx.doi.org/ 10.1093/molbev/msr121
    • (2011) Mol Biol Evol. , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 25
    • 84864453108 scopus 로고    scopus 로고
    • jModelTest 2: More models, new heuristics and parallel computing
    • Darriba D, Taboada GL, Doallo R, Posada D. jModelTest 2: more models, new heuristics and parallel computing. Nat Methods. 2012;9:772. http://dx.doi.org/10.1038/nmeth.2109
    • (2012) Nat Methods. , vol.9 , pp. 772
    • Darriba, D.1    Taboada, G.L.2    Doallo, R.3    Posada, D.4
  • 26
    • 14644397888 scopus 로고    scopus 로고
    • RAxML-III: A fast program for maximum likelihood-based inference of large phylogenetic trees
    • Stamatakis A, Ludwig T, Meier H. RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees. Bioinformatics. 2005;21:456-63. http://dx.doi.org/10.1093/ bioinformatics/bti191
    • (2005) Bioinformatics. , vol.21 , pp. 456-463
    • Stamatakis, A.1    Ludwig, T.2    Meier, H.3
  • 27
    • 84864530626 scopus 로고    scopus 로고
    • Bayesian phylogenetics with BEAUti and the BEAST 1.7
    • Drummond AJ, Suchard MA, Xie D, Rambaut A. Bayesian phylogenetics with BEAUti and the BEAST 1.7. Mol Biol Evol. 2012;29:1969-73. http://dx.doi.org/10.1093/molbev/mss075
    • (2012) Mol Biol Evol. , vol.29 , pp. 1969-1973
    • Drummond, A.J.1    Suchard, M.A.2    Xie, D.3    Rambaut, A.4
  • 28
    • 42649136257 scopus 로고    scopus 로고
    • Correlating viral phenotypes with phylogeny: Accounting for phylogenetic uncertainty
    • Parker J, Rambaut A, Pybus OG. Correlating viral phenotypes with phylogeny: accounting for phylogenetic uncertainty. Infect Genet Evol. 2008;8:239-46. http://dx.doi.org/10.1016/j.meegid.2007.08.001
    • (2008) Infect Genet Evol. , vol.8 , pp. 239-246
    • Parker, J.1    Rambaut, A.2    Pybus, O.G.3
  • 29
    • 33846007284 scopus 로고    scopus 로고
    • Stochastic processes are key determinants of short-term evolution in influenza a virus
    • Nelson MI, Simonsen L, Viboud C, Miller MA, Taylor J, George KS, et al. Stochastic processes are key determinants of short-term evolution in influenza a virus. PLoS Pathog. 2006;2:e125. http://dx.doi.org/10.1371/journal.ppat.0020125
    • (2006) PLoS Pathog. , vol.2
    • Nelson, M.I.1    Simonsen, L.2    Viboud, C.3    Miller, M.A.4    Taylor, J.5    George, K.S.6
  • 30
    • 24944468625 scopus 로고    scopus 로고
    • Whole-genome analysis of human influenza A virus reveals multiple persistent lineages and reassortment among recent H3N2 viruses
    • Holmes EC, Ghedin E, Miller N, Taylor J, Bao Y, St George K, et al. Whole-genome analysis of human influenza A virus reveals multiple persistent lineages and reassortment among recent H3N2 viruses. PLoS Biol. 2005;3:e300. http://dx.doi.org/10.1371/ journal.pbio.0030300
    • (2005) PLoS Biol. , vol.3
    • Holmes, E.C.1    Ghedin, E.2    Miller, N.3    Taylor, J.4    Bao, Y.5    St George, K.6
  • 31
    • 34848927452 scopus 로고    scopus 로고
    • Phylogenetic analysis reveals the global migration of seasonal influenza A viruses
    • Nelson MI, Simonsen L, Viboud C, Miller MA, Holmes EC. Phylogenetic analysis reveals the global migration of seasonal influenza A viruses. PLoS Pathog. 2007;3:1220-8. http://dx.doi.org/ 10.1371/journal.ppat.0030131
    • (2007) PLoS Pathog. , vol.3 , pp. 1220-1228
    • Nelson, M.I.1    Simonsen, L.2    Viboud, C.3    Miller, M.A.4    Holmes, E.C.5
  • 32
    • 33646150239 scopus 로고    scopus 로고
    • Detailed analysis of the genetic evolution of influenza virus during the course of an epidemic
    • Lavenu A, Leruez-Ville M, Chaix ML, Boelle PY, Rogez S, Freymuth F, et al. Detailed analysis of the genetic evolution of influenza virus during the course of an epidemic. Epidemiol Infect. 2006;134:514-20. http://dx.doi.org/10.1017/S0950268805005686
    • (2006) Epidemiol Infect. , vol.134 , pp. 514-520
    • Lavenu, A.1    Leruez-Ville, M.2    Chaix, M.L.3    Boelle, P.Y.4    Rogez, S.5    Freymuth, F.6
  • 33
    • 84902977383 scopus 로고    scopus 로고
    • Multiyear persistence of 2 pandemic A/H1N1 influenza virus lineages in west Africa
    • Nelson MI, Njouom R, Viboud C, Niang MN, Kadjo H, Ampofo W, et al. Multiyear persistence of 2 pandemic A/H1N1 influenza virus lineages in west Africa. J Infect Dis. 2014;210: 121-5. http://dx.doi.org/10.1093/infdis/jiu047
    • (2014) J Infect Dis. , vol.210 , pp. 121-125
    • Nelson, M.I.1    Njouom, R.2    Viboud, C.3    Niang, M.N.4    Kadjo, H.5    Ampofo, W.6
  • 34
    • 84895733259 scopus 로고    scopus 로고
    • Unifying viral genetics and human transportation data to predict the global transmission dynamics of human influenza H3N2
    • Lemey P, Rambaut A, Bedford T, Faria N, Bielejec F, Baele G, et al. Unifying viral genetics and human transportation data to predict the global transmission dynamics of human influenza H3N2. PLoS Pathog. 2014;10:e1003932. http://dx.doi.org/10.1371/ journal.ppat.1003932
    • (2014) PLoS Pathog. , vol.10
    • Lemey, P.1    Rambaut, A.2    Bedford, T.3    Faria, N.4    Bielejec, F.5    Baele, G.6
  • 35
    • 84887481192 scopus 로고    scopus 로고
    • Elevated rates of gold mining in the Amazon revealed through high-resolution monitoring
    • Asner GP, Llactayo W, Tupayachi R, Luna ER. Elevated rates of gold mining in the Amazon revealed through high-resolution monitoring. Proc Natl Acad Sci U S A. 2013;110:18454-9. http://dx.doi.org/10.1073/pnas.1318271110
    • (2013) Proc Natl Acad Sci U S A. , vol.110 , pp. 18454-18459
    • Asner, G.P.1    Llactayo, W.2    Tupayachi, R.3    Luna, E.R.4
  • 36
    • 79959332087 scopus 로고    scopus 로고
    • Spatial and temporal characteristics of the 2009 A/H1N1 influenza pandemic in Peru
    • Chowell G, Viboud C, Munayco CV, Gomez J, Simonsen L, Miller MA, et al. Spatial and temporal characteristics of the 2009 A/H1N1 influenza pandemic in Peru. PLoS ONE. 2011;6:e21287. http://dx.doi.org/10.1371/journal.pone.0021287
    • (2011) PLoS ONE. , vol.6
    • Chowell, G.1    Viboud, C.2    Munayco, C.V.3    Gomez, J.4    Simonsen, L.5    Miller, M.A.6
  • 37
    • 84858116900 scopus 로고    scopus 로고
    • Interspecies interactions and potential Influenza A virus risk in small swine farms in Peru
    • McCune S, Arriola CS, Gilman RH, Romero MA, Ayvar V, Cama VA, et al. Interspecies interactions and potential Influenza A virus risk in small swine farms in Peru. BMC Infect Dis. 2012;12:58. http://dx.doi.org/10.1186/ 1471-2334-12-58
    • (2012) BMC Infect Dis. , vol.12 , pp. 58
    • McCune, S.1    Arriola, C.S.2    Gilman, R.H.3    Romero, M.A.4    Ayvar, V.5    Cama, V.A.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.