-
1
-
-
84897552314
-
Pandemic preparedness and response-lessons from the H1N1 influenza of 2009
-
Fineberg HV. Pandemic preparedness and response-lessons from the H1N1 influenza of 2009. N Engl J Med. 2014;370:1335-42. http://dx.doi.org/10.1056/NEJMra1208802
-
(2014)
N Engl J Med.
, vol.370
, pp. 1335-1342
-
-
Fineberg, H.V.1
-
2
-
-
77954500958
-
Epidemiology of influenza-like illness in the Amazon Basin of Peru, 2008-2009
-
Forshey BM, Laguna-Torres VA, Vilcarromero S, Bazan I, Rocha C, Morrison AC, et al. Epidemiology of influenza-like illness in the Amazon Basin of Peru, 2008-2009. Influenza Other Respir Viruses. 2010;4:235-43. http://dx.doi.org/10.1111/j.1750-2659.2010.00139.x
-
(2010)
Influenza Other Respir Viruses.
, vol.4
, pp. 235-243
-
-
Forshey, B.M.1
Laguna-Torres, V.A.2
Vilcarromero, S.3
Bazan, I.4
Rocha, C.5
Morrison, A.C.6
-
3
-
-
70449372461
-
Preliminary population-based epidemiological and clinical data on 2009 pandemic H1N1 influenza A (pH1N1) from Lima, Peru
-
Tinoco Y, Razuri H, Ortiz EJ, Gomez J, Widdowson MA, Uyeki T, et al. Preliminary population-based epidemiological and clinical data on 2009 pandemic H1N1 influenza A (pH1N1) from Lima, Peru. Influenza Other Respir Viruses. 2009;3:253-6. http://dx.doi.org/10.1111/j.1750-2659.2009.00111.x
-
(2009)
Influenza Other Respir Viruses.
, vol.3
, pp. 253-256
-
-
Tinoco, Y.1
Razuri, H.2
Ortiz, E.J.3
Gomez, J.4
Widdowson, M.A.5
Uyeki, T.6
-
4
-
-
33646235618
-
Influenza in tropical regions
-
Viboud C, Alonso WJ, Simonsen L. Influenza in tropical regions. PLoS Med. 2006;3:e89. http://dx.doi.org/10.1371/journal.pmed.0030089
-
(2006)
PLoS Med.
, vol.3
-
-
Viboud, C.1
Alonso, W.J.2
Simonsen, L.3
-
5
-
-
44449164435
-
The genomic and epidemiological dynamics of human influenza A virus
-
Rambaut A, Pybus OG, Nelson MI, Viboud C, Taubenberger JK,Holmes EC. The genomic and epidemiological dynamics of human influenza A virus. Nature. 2008;453:615-9. http://dx.doi.org/10.1038/nature06945
-
(2008)
Nature.
, vol.453
, pp. 615-619
-
-
Rambaut, A.1
Pybus, O.G.2
Nelson, M.I.3
Viboud, C.4
Taubenberger, J.K.5
Holmes, E.C.6
-
6
-
-
51449099282
-
Influenza vaccine strain selection and recent studies on the global migration of seasonal influenza viruses
-
Russell CA, Jones TC, Barr IG, Cox NJ, Garten RJ, Gregory V, et al. Influenza vaccine strain selection and recent studies on the global migration of seasonal influenza viruses. Vaccine. 2008;26(Suppl 4):D31-4. http://dx.doi.org/10.1016/j.vaccine.2008.07.078
-
(2008)
Vaccine.
, vol.26
, pp. D31-D34
-
-
Russell, C.A.1
Jones, T.C.2
Barr, I.G.3
Cox, N.J.4
Garten, R.J.5
Gregory, V.6
-
7
-
-
82755190600
-
Temporally structured metapopulation dynamics and persistence of influenza A H3N2 virus in humans
-
Bahl J, Nelson MI, Chan KH, Chen R, Vijaykrishna D, Halpin RA, et al. Temporally structured metapopulation dynamics and persistence of influenza A H3N2 virus in humans. Proc Natl Acad Sci U S A. 2011;108:19359-64. http://dx.doi.org/10.1073/pnas.1109314108
-
(2011)
Proc Natl Acad Sci U S A.
, vol.108
, pp. 19359-19364
-
-
Bahl, J.1
Nelson, M.I.2
Chan, K.H.3
Chen, R.4
Vijaykrishna, D.5
Halpin, R.A.6
-
8
-
-
84887000074
-
Migration and persistence of human influenza A viruses, Vietnam, 2001-2008
-
Le MQ, Lam HM, Cuong VD, Lam TT, Halpin RA, Wentworth DE, et al. Migration and persistence of human influenza A viruses, Vietnam, 2001-2008. Emerg Infect Dis. 2013;19:1756-65. http://dx.doi.org/10.3201/eid1911.130349
-
(2013)
Emerg Infect Dis.
, vol.19
, pp. 1756-1765
-
-
Le, M.Q.1
Lam, H.M.2
Cuong, V.D.3
Lam, T.T.4
Halpin, R.A.5
Wentworth, D.E.6
-
9
-
-
84872976710
-
Epidemiological dynamics and phylogeography of influenza virus in southern China
-
Cheng X, Tan Y, He M, Lam TT, Lu X, Viboud C, et al. Epidemiological dynamics and phylogeography of influenza virus in southern China. J Infect Dis. 2013;207:106-14. http://dx.doi.org/ 10.1093/infdis/jis526
-
(2013)
J Infect Dis.
, vol.207
, pp. 106-114
-
-
Cheng, X.1
Tan, Y.2
He, M.3
Lam, T.T.4
Lu, X.5
Viboud, C.6
-
10
-
-
50949115082
-
Seasonality of influenza A(H3N2) virus: A Hong Kong perspective (1997-2006)
-
Tang JW, Ngai KL, Lam WY, Chan PK. Seasonality of influenza A(H3N2) virus: a Hong Kong perspective (1997-2006). PLoS ONE. 2008;3:e2768. http://dx.doi.org/10.1371/journal.pone.0002768
-
(2008)
PLoS ONE.
, vol.3
-
-
Tang, J.W.1
Ngai, K.L.2
Lam, W.Y.3
Chan, P.K.4
-
11
-
-
42349094829
-
The global circulation of seasonal influenza A (H3N2) viruses
-
Russell CA, Jones TC, Barr IG, Cox NJ, Garten RJ, Gregory V, et al. The global circulation of seasonal influenza A (H3N2) viruses. Science. 2008;320:340-6. http://dx.doi.org/10.1126/science.1154137
-
(2008)
Science.
, vol.320
, pp. 340-346
-
-
Russell, C.A.1
Jones, T.C.2
Barr, I.G.3
Cox, N.J.4
Garten, R.J.5
Gregory, V.6
-
12
-
-
84902980670
-
The evolutionary dynamics of influenza A and B viruses in the tropical city of Managua, Nicaragua
-
Nelson MI, Balmaseda A, Kuan G, Saborio S, Lin X, Halpin RA, et al. The evolutionary dynamics of influenza A and B viruses in the tropical city of Managua, Nicaragua. Virology. 2014;462-463:81-90. http://dx.doi.org/10.1016/j.virol.2014.05.025
-
(2014)
Virology.
, vol.462-463
, pp. 81-90
-
-
Nelson, M.I.1
Balmaseda, A.2
Kuan, G.3
Saborio, S.4
Lin, X.5
Halpin, R.A.6
-
13
-
-
34547485985
-
Seasonality of influenza in Brazil: A traveling wave from the Amazon to the subtropics
-
Alonso WJ, Viboud C, Simonsen L, Hirano EW, Daufenbach LZ, Miller MA. Seasonality of influenza in Brazil: a traveling wave from the Amazon to the subtropics. Am J Epidemiol. 2007;165:1434-42. http://dx.doi.org/10.1093/aje/kwm012
-
(2007)
Am J Epidemiol.
, vol.165
, pp. 1434-1442
-
-
Alonso, W.J.1
Viboud, C.2
Simonsen, L.3
Hirano, E.W.4
Daufenbach, L.Z.5
Miller, M.A.6
-
14
-
-
67749110278
-
Influenza-like illness sentinel surveillance in Peru
-
Laguna-Torres VA, Gomez J, Ocana V, Aguilar P, Saldarriaga T, Chavez E, et al. Influenza-like illness sentinel surveillance in Peru. PLoS ONE. 2009;4:e6118. http://dx.doi.org/10.1371/journal.pone.0006118
-
(2009)
PLoS ONE.
, vol.4
-
-
Laguna-Torres, V.A.1
Gomez, J.2
Ocana, V.3
Aguilar, P.4
Saldarriaga, T.5
Chavez, E.6
-
15
-
-
84859399153
-
Population-based active surveillance cohort studies for influenza: Lessons from Peru
-
Razuri H, Romero C, Tinoco Y, Guezala MC, Ortiz E, Silva M, et al. Population-based active surveillance cohort studies for influenza: lessons from Peru. Bull World Health Organ. 2012; 90:318-20.
-
(2012)
Bull World Health Organ.
, vol.90
, pp. 318-320
-
-
Razuri, H.1
Romero, C.2
Tinoco, Y.3
Guezala, M.C.4
Ortiz, E.5
Silva, M.6
-
16
-
-
0034051550
-
Global epidemiology of influenza: Past and present
-
Cox NJ, Subbarao K. Global epidemiology of influenza: past and present. Annu Rev Med. 2000;51:407-21. http://dx.doi.org/ 10.1146/annurev.med.51.1.407
-
(2000)
Annu Rev Med.
, vol.51
, pp. 407-421
-
-
Cox, N.J.1
Subbarao, K.2
-
18
-
-
84859520338
-
Two years after pandemic influenza A/2009/H1N1: What have we learned?
-
Cheng VC, To KK, Tse H, Hung IF, Yuen KY. Two years after pandemic influenza A/2009/H1N1: what have we learned? Clin Microbiol Rev. 2012;25:223-63. http://dx.doi.org/10.1128/CMR.05012-11
-
(2012)
Clin Microbiol Rev.
, vol.25
, pp. 223-263
-
-
Cheng, V.C.1
To, K.K.2
Tse, H.3
Hung, I.F.4
Yuen, K.Y.5
-
20
-
-
70349272201
-
Single-reaction genomic amplification accelerates sequencing and vaccine production for classical and swine origin human influenza a viruses
-
Zhou B, Donnelly ME, Scholes DT, St George K, Hatta M, Kawaoka Y, et al. Single-reaction genomic amplification accelerates sequencing and vaccine production for classical and swine origin human influenza a viruses. J Virol. 2009;83:10309-13. http://dx.doi.org/10.1128/JVI.01109-09
-
(2009)
J Virol.
, vol.83
, pp. 10309-10313
-
-
Zhou, B.1
Donnelly, M.E.2
Scholes, D.T.3
St George, K.4
Hatta, M.5
Kawaoka, Y.6
-
21
-
-
84864560782
-
Influenza A virus molecular virology techniques
-
Zhou B, Wentworth DE. Influenza A virus molecular virology techniques. Methods Mol Biol. 2012;865:175-92. http://dx.doi.org/ 10.1007/978-1-61779-621-0_11
-
(2012)
Methods Mol Biol.
, vol.865
, pp. 175-192
-
-
Zhou, B.1
Wentworth, D.E.2
-
22
-
-
84969949123
-
-
May 10, [cited 2013 Nov 1]
-
White paper on reference assembly in CLC Assembly Cell 3.0. May 10, 2010 [cited 2013 Nov 1]. http://www.clcbio.com/wp-content/uploads/2012/09/white_paper_on_reference_assembly_on_the_CLC_Assembly_Cell.pdf
-
(2010)
White paper on reference assembly in CLC Assembly Cell 3.0.
-
-
-
23
-
-
84867723807
-
Influenza Research Database: An integrated bioinformatics resource for influenza research and surveillance
-
Squires RB, Noronha J, Hunt V, Garcia-Sastre A, Macken C, Baumgarth N, et al. Influenza Research Database: an integrated bioinformatics resource for influenza research and surveillance. Influenza Other Respir Viruses. 2012;6:404-16. http://dx.doi.org/ 10.1111/j.1750-2659.2011.00331.x
-
(2012)
Influenza Other Respir Viruses.
, vol.6
, pp. 404-416
-
-
Squires, R.B.1
Noronha, J.2
Hunt, V.3
Garcia-Sastre, A.4
Macken, C.5
Baumgarth, N.6
-
24
-
-
79957613599
-
MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. 2011;28:2731-9. http://dx.doi.org/ 10.1093/molbev/msr121
-
(2011)
Mol Biol Evol.
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
Kumar, S.6
-
25
-
-
84864453108
-
jModelTest 2: More models, new heuristics and parallel computing
-
Darriba D, Taboada GL, Doallo R, Posada D. jModelTest 2: more models, new heuristics and parallel computing. Nat Methods. 2012;9:772. http://dx.doi.org/10.1038/nmeth.2109
-
(2012)
Nat Methods.
, vol.9
, pp. 772
-
-
Darriba, D.1
Taboada, G.L.2
Doallo, R.3
Posada, D.4
-
26
-
-
14644397888
-
RAxML-III: A fast program for maximum likelihood-based inference of large phylogenetic trees
-
Stamatakis A, Ludwig T, Meier H. RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees. Bioinformatics. 2005;21:456-63. http://dx.doi.org/10.1093/ bioinformatics/bti191
-
(2005)
Bioinformatics.
, vol.21
, pp. 456-463
-
-
Stamatakis, A.1
Ludwig, T.2
Meier, H.3
-
27
-
-
84864530626
-
Bayesian phylogenetics with BEAUti and the BEAST 1.7
-
Drummond AJ, Suchard MA, Xie D, Rambaut A. Bayesian phylogenetics with BEAUti and the BEAST 1.7. Mol Biol Evol. 2012;29:1969-73. http://dx.doi.org/10.1093/molbev/mss075
-
(2012)
Mol Biol Evol.
, vol.29
, pp. 1969-1973
-
-
Drummond, A.J.1
Suchard, M.A.2
Xie, D.3
Rambaut, A.4
-
28
-
-
42649136257
-
Correlating viral phenotypes with phylogeny: Accounting for phylogenetic uncertainty
-
Parker J, Rambaut A, Pybus OG. Correlating viral phenotypes with phylogeny: accounting for phylogenetic uncertainty. Infect Genet Evol. 2008;8:239-46. http://dx.doi.org/10.1016/j.meegid.2007.08.001
-
(2008)
Infect Genet Evol.
, vol.8
, pp. 239-246
-
-
Parker, J.1
Rambaut, A.2
Pybus, O.G.3
-
29
-
-
33846007284
-
Stochastic processes are key determinants of short-term evolution in influenza a virus
-
Nelson MI, Simonsen L, Viboud C, Miller MA, Taylor J, George KS, et al. Stochastic processes are key determinants of short-term evolution in influenza a virus. PLoS Pathog. 2006;2:e125. http://dx.doi.org/10.1371/journal.ppat.0020125
-
(2006)
PLoS Pathog.
, vol.2
-
-
Nelson, M.I.1
Simonsen, L.2
Viboud, C.3
Miller, M.A.4
Taylor, J.5
George, K.S.6
-
30
-
-
24944468625
-
Whole-genome analysis of human influenza A virus reveals multiple persistent lineages and reassortment among recent H3N2 viruses
-
Holmes EC, Ghedin E, Miller N, Taylor J, Bao Y, St George K, et al. Whole-genome analysis of human influenza A virus reveals multiple persistent lineages and reassortment among recent H3N2 viruses. PLoS Biol. 2005;3:e300. http://dx.doi.org/10.1371/ journal.pbio.0030300
-
(2005)
PLoS Biol.
, vol.3
-
-
Holmes, E.C.1
Ghedin, E.2
Miller, N.3
Taylor, J.4
Bao, Y.5
St George, K.6
-
31
-
-
34848927452
-
Phylogenetic analysis reveals the global migration of seasonal influenza A viruses
-
Nelson MI, Simonsen L, Viboud C, Miller MA, Holmes EC. Phylogenetic analysis reveals the global migration of seasonal influenza A viruses. PLoS Pathog. 2007;3:1220-8. http://dx.doi.org/ 10.1371/journal.ppat.0030131
-
(2007)
PLoS Pathog.
, vol.3
, pp. 1220-1228
-
-
Nelson, M.I.1
Simonsen, L.2
Viboud, C.3
Miller, M.A.4
Holmes, E.C.5
-
32
-
-
33646150239
-
Detailed analysis of the genetic evolution of influenza virus during the course of an epidemic
-
Lavenu A, Leruez-Ville M, Chaix ML, Boelle PY, Rogez S, Freymuth F, et al. Detailed analysis of the genetic evolution of influenza virus during the course of an epidemic. Epidemiol Infect. 2006;134:514-20. http://dx.doi.org/10.1017/S0950268805005686
-
(2006)
Epidemiol Infect.
, vol.134
, pp. 514-520
-
-
Lavenu, A.1
Leruez-Ville, M.2
Chaix, M.L.3
Boelle, P.Y.4
Rogez, S.5
Freymuth, F.6
-
33
-
-
84902977383
-
Multiyear persistence of 2 pandemic A/H1N1 influenza virus lineages in west Africa
-
Nelson MI, Njouom R, Viboud C, Niang MN, Kadjo H, Ampofo W, et al. Multiyear persistence of 2 pandemic A/H1N1 influenza virus lineages in west Africa. J Infect Dis. 2014;210: 121-5. http://dx.doi.org/10.1093/infdis/jiu047
-
(2014)
J Infect Dis.
, vol.210
, pp. 121-125
-
-
Nelson, M.I.1
Njouom, R.2
Viboud, C.3
Niang, M.N.4
Kadjo, H.5
Ampofo, W.6
-
34
-
-
84895733259
-
Unifying viral genetics and human transportation data to predict the global transmission dynamics of human influenza H3N2
-
Lemey P, Rambaut A, Bedford T, Faria N, Bielejec F, Baele G, et al. Unifying viral genetics and human transportation data to predict the global transmission dynamics of human influenza H3N2. PLoS Pathog. 2014;10:e1003932. http://dx.doi.org/10.1371/ journal.ppat.1003932
-
(2014)
PLoS Pathog.
, vol.10
-
-
Lemey, P.1
Rambaut, A.2
Bedford, T.3
Faria, N.4
Bielejec, F.5
Baele, G.6
-
35
-
-
84887481192
-
Elevated rates of gold mining in the Amazon revealed through high-resolution monitoring
-
Asner GP, Llactayo W, Tupayachi R, Luna ER. Elevated rates of gold mining in the Amazon revealed through high-resolution monitoring. Proc Natl Acad Sci U S A. 2013;110:18454-9. http://dx.doi.org/10.1073/pnas.1318271110
-
(2013)
Proc Natl Acad Sci U S A.
, vol.110
, pp. 18454-18459
-
-
Asner, G.P.1
Llactayo, W.2
Tupayachi, R.3
Luna, E.R.4
-
36
-
-
79959332087
-
Spatial and temporal characteristics of the 2009 A/H1N1 influenza pandemic in Peru
-
Chowell G, Viboud C, Munayco CV, Gomez J, Simonsen L, Miller MA, et al. Spatial and temporal characteristics of the 2009 A/H1N1 influenza pandemic in Peru. PLoS ONE. 2011;6:e21287. http://dx.doi.org/10.1371/journal.pone.0021287
-
(2011)
PLoS ONE.
, vol.6
-
-
Chowell, G.1
Viboud, C.2
Munayco, C.V.3
Gomez, J.4
Simonsen, L.5
Miller, M.A.6
-
37
-
-
84858116900
-
Interspecies interactions and potential Influenza A virus risk in small swine farms in Peru
-
McCune S, Arriola CS, Gilman RH, Romero MA, Ayvar V, Cama VA, et al. Interspecies interactions and potential Influenza A virus risk in small swine farms in Peru. BMC Infect Dis. 2012;12:58. http://dx.doi.org/10.1186/ 1471-2334-12-58
-
(2012)
BMC Infect Dis.
, vol.12
, pp. 58
-
-
McCune, S.1
Arriola, C.S.2
Gilman, R.H.3
Romero, M.A.4
Ayvar, V.5
Cama, V.A.6
|