메뉴 건너뛰기




Volumn 6, Issue JUN, 2015, Pages 1-

Automated quantification of the phagocytosis of Aspergillus fumigatus conidia by a novel image analysis algorithm

Author keywords

Automated image analysis; Alveolar macrophages; Aspergillus fumigatus; Host pathogen interaction; Phagocytosis assay

Indexed keywords

ALGORITHM; ARTICLE; ASPERGILLUS FUMIGATUS; CELL AGGREGATION; CONFOCAL LASER MICROSCOPY; CONIDIUM; FUNGAL DEVELOPMENT; HOST PATHOGEN INTERACTION; IMAGE ANALYSIS; IMMUNOCOMPETENT CELL; MACROPHAGE; NONHUMAN; PHAGOCYTOSIS; QUANTITATIVE ANALYSIS; WATERSHED;

EID: 84937000053     PISSN: None     EISSN: 1664302X     Source Type: Journal    
DOI: 10.3389/fmicb.2015.00549     Document Type: Article
Times cited : (21)

References (35)
  • 1
    • 0033046220 scopus 로고    scopus 로고
    • Mechanisms of phagocytosis in macrophages
    • Aderem, A., and Underhill, D. M. (1999). Mechanisms of phagocytosis in macrophages. Annu. Rev. Immunol . 17, 593-623. doi: 10.1146/annurev.immunol.17.1.593
    • (1999) Annu. Rev. Immunol. , vol.17 , pp. 593-623
    • Aderem, A.1    Underhill, D.M.2
  • 2
    • 84903820401 scopus 로고    scopus 로고
    • Melanin dependent survival of Apergillus fumigatus conidia in lung epithelial cells
    • Amin, S., Thywissen, A., Heinekamp, T., Saluz, H. P., and Brakhage, A. A. (2014). Melanin dependent survival of Apergillus fumigatus conidia in lung epithelial cells. Int. J. Med. Microbiol . 304, 626-636. doi: 10.1016/j.ijmm.2014.04.009
    • (2014) Int. J. Med. Microbiol. , vol.304 , pp. 626-636
    • Amin, S.1    Thywissen, A.2    Heinekamp, T.3    Saluz, H.P.4    Brakhage, A.A.5
  • 4
    • 27944450041 scopus 로고    scopus 로고
    • Systemic fungal infections caused by Aspergillus species: epidemiology, infection process and virulence determinants
    • Brakhage, A. A. (2005). Systemic fungal infections caused by Aspergillus species: epidemiology, infection process and virulence determinants. Curr. Drug. Targets . 6, 875-886. doi: 10.2174/138945005774912717
    • (2005) Curr. Drug. Targets. , vol.6 , pp. 875-886
    • Brakhage, A.A.1
  • 5
    • 0003754578 scopus 로고    scopus 로고
    • Aspergillus Fumigatus: Biology Clinical Aspects Molecular Approaches to Pathogenicity
    • (eds.), Basel: Karger Medical Scientific Publishers.
    • Brakhage, A. A., Jahn, B., and Schmidt, A. (eds.). (1999). Aspergillus Fumigatus: Biology, Clinical Aspects, and Molecular Approaches to Pathogenicity , Vol. 2. Basel: Karger Medical and Scientific Publishers.
    • (1999) , vol.2
    • Brakhage, A.A.1    Jahn, B.2    Schmidt, A.3
  • 6
    • 0036405360 scopus 로고    scopus 로고
    • Menacing mold: the molecular biology of Aspergillus fumigatus
    • Brakhage, A. A., and Langfelder, K. (2002). Menacing mold: the molecular biology of Aspergillus fumigatus . Annu. Rev. Microbiol . 56, 433-455. doi: 10.1146/annurev.micro.56.012302.160625
    • (2002) Annu. Rev. Microbiol. , vol.56 , pp. 433-455
    • Brakhage, A.A.1    Langfelder, K.2
  • 7
    • 0029072701 scopus 로고
    • Use of reporter genes to identify recessive trans-acting mutations specifically involved in the regulation of Aspergillus nidulans penicillin biosynthesis genes.
    • Brakhage, A. A., and Van den Brulle, J. (1995). Use of reporter genes to identify recessive trans-acting mutations specifically involved in the regulation of Aspergillus nidulans penicillin biosynthesis genes. J. Bacteriol . 177, 2781-2788
    • (1995) J.Bacteriol. , vol.177 , pp. 2781-2788
    • Brakhage, A.A.1    Van den Brulle, J.2
  • 8
    • 33845792555 scopus 로고    scopus 로고
    • CellProfiler: image analysis software for identifying quantifying cell phenotypes.
    • Carpenter, A. E., Jones, T. R., Lamprecht, M. R., Clarke, C., Kang, I. H., Friman, O., et al. (2006). CellProfiler: image analysis software for identifying and quantifying cell phenotypes. Genome Biol . 7:R100. doi: 10.1186/gb-2006-7-10-r100
    • (2006) Genome Biol. , vol.7 , pp. R100
    • Carpenter, A.E.1    Jones, T.R.2    Lamprecht, M.R.3    Clarke, C.4    Kang, I.H.5    Friman, O.6
  • 10
    • 67650998748 scopus 로고    scopus 로고
    • Pathogenesis of Aspergillus fumigatus in invasive aspergillosis
    • Dagenais, T. R., and Keller, N. P. (2009). Pathogenesis of Aspergillus fumigatus in invasive aspergillosis. Clin. Microbiol. Rev . 22, 447-465. doi: 10.1128/CMR.00055-08
    • (2009) Clin. Microbiol. Rev. , vol.22 , pp. 447-465
    • Dagenais, T.R.1    Keller, N.P.2
  • 11
    • 40049086117 scopus 로고    scopus 로고
    • 2D Euclidean distance transform algorithms: a comparative survey
    • Fabbri, R., Costa, L. D. F., Torelli, J. C., and Bruno, O. M. (2008). 2D Euclidean distance transform algorithms: a comparative survey. ACM Comput. Surv . 40, 2. doi: 10.1145/1322432.1322434
    • (2008) ACM Comput. Surv. , vol.40 , pp. 2
    • Fabbri, R.1    Costa, L.D.F.2    Torelli, J.C.3    Bruno, O.M.4
  • 12
    • 0003626435 scopus 로고    scopus 로고
    • Digital Image Processing 3rd Edn.
    • Upper Saddle River NJ: Prentice-Hall Inc.
    • Gonzalez, R. C., and Woods, R. E. (2006). Digital Image Processing, 3rd Edn . Upper Saddle River, NJ: Prentice-Hall, Inc.
    • (2006)
    • Gonzalez, R.C.1    Woods, R.E.2
  • 13
    • 84936989536 scopus 로고    scopus 로고
    • Genome plasticity of aspergillus species
    • eds J.Hacker U.Dobrindt R. Kurth (Washington DC: American Society of Microbiology)
    • Heinekamp, T., and Brakhage, A. A. (2012). "Genome plasticity of aspergillus species," in Genome Plasticity and Infectious Diseases , eds J. Hacker, U. Dobrindt, and R. Kurth (Washington, DC: American Society of Microbiology), 326-342.
    • (2012) Genome Plasticity Infectious Diseases , pp. 326-342
    • Heinekamp, T.1    Brakhage, A.A.2
  • 14
    • 77953927869 scopus 로고    scopus 로고
    • Embryonated eggs as an alternative infection model to investigate Aspergillus fumigatus virulence
    • Jacobsen, I. D., Große, K., Slesiona, S., Hube, B., Berndt, A., and Brock, M. (2010). Embryonated eggs as an alternative infection model to investigate Aspergillus fumigatus virulence. Infect. Immun . 78, 2995-3006. doi: 10.1128/IAI.00268-10
    • (2010) Infect. Immun. , vol.78 , pp. 2995-3006
    • Jacobsen, I.D.1    Große, K.2    Slesiona, S.3    Hube, B.4    Berndt, A.5    Brock, M.6
  • 15
    • 85027940571 scopus 로고    scopus 로고
    • Virulent strain of Lichtheimia corymbifera shows increased phagocytosis by macrophages as revealed by automated microscopy image analysis
    • Kraibooj, K., Park, H. R., Dahse, H. M., Skerka, C., Voigt, K., and Figge, M. T. (2014). Virulent strain of Lichtheimia corymbifera shows increased phagocytosis by macrophages as revealed by automated microscopy image analysis. Mycoses 57, 56-66. doi: 10.1111/myc.12237
    • (2014) Mycoses , vol.57 , pp. 56-66
    • Kraibooj, K.1    Park, H.R.2    Dahse, H.M.3    Skerka, C.4    Voigt, K.5    Figge, M.T.6
  • 16
    • 84893215766 scopus 로고    scopus 로고
    • Points of significance: visualizing samples with box plots
    • Krzywinski, M., and Altman, N. (2014). Points of significance: visualizing samples with box plots. Nat. Methods 11, 119-120. doi: 10.1038/nmeth.2813
    • (2014) Nat. Methods , vol.11 , pp. 119-120
    • Krzywinski, M.1    Altman, N.2
  • 17
    • 0032916340 scopus 로고    scopus 로고
    • Aspergillus fumigatus and aspergillosis
    • Latgé, J. P. (1999). Aspergillus fumigatus and aspergillosis. Clin. Microbiol. Rev . 12, 310-350.
    • (1999) Clin. Microbiol. Rev. , vol.12 , pp. 310-350
    • Latgé, J.P.1
  • 18
    • 22544450473 scopus 로고    scopus 로고
    • Methylcitrate synthase from Aspergillus fumigatus . Propionyl-CoA affects polyketide synthesis, growth and morphology of conidia
    • Maerker, C., Rohde, M., Brakhage, A. A., and Brock, M. (2005). Methylcitrate synthase from Aspergillus fumigatus . Propionyl-CoA affects polyketide synthesis, growth and morphology of conidia. FEBS J . 272, 3615-3630. doi: 10.1111/j.1742-4658.2005.04784.x
    • (2005) FEBS J. , vol.272 , pp. 3615-3630
    • Maerker, C.1    Rohde, M.2    Brakhage, A.A.3    Brock, M.4
  • 19
    • 79955795716 scopus 로고    scopus 로고
    • Automated image analysis of the host-pathogen interaction between phagocytes Aspergillus fumigatus.
    • Mech, F., Thywißen, A., Guthke, R., Brakhage, A. A., and Figge, M. T. (2011). Automated image analysis of the host-pathogen interaction between phagocytes and Aspergillus fumigatus . PLoS ONE 6:e19591. doi: 10.1371/journal.pone.0019591
    • (2011) PLoS ONE , vol.6
    • Mech, F.1    Thywißen, A.2    Guthke, R.3    Brakhage, A.A.4    Figge, M.T.5
  • 20
    • 84892670479 scopus 로고    scopus 로고
    • Epithelial invasion outcompetes hypha development during Candida albicans infection as revealed by an image-based systems biology approach
    • Mech, F., Wilson, D., Lehnert, T., Hube, B., and Figge, M. T. (2014). Epithelial invasion outcompetes hypha development during Candida albicans infection as revealed by an image-based systems biology approach. Cytometry A 85, 126-139. doi: 10.1002/cyto.a.22418
    • (2014) Cytometry A , vol.85 , pp. 126-139
    • Mech, F.1    Wilson, D.2    Lehnert, T.3    Hube, B.4    Figge, M.T.5
  • 21
    • 84929948915 scopus 로고    scopus 로고
    • Image-based systems biology of infection
    • Medyukhina, A., Timme, S., Mokhtari, Z., and Figge, M. T. (2015). Image-based systems biology of infection. Cytometry A 87, 462-470. doi: 10.1002/cyto.a.22638
    • (2015) Cytometry A , vol.87 , pp. 462-470
    • Medyukhina, A.1    Timme, S.2    Mokhtari, Z.3    Figge, M.T.4
  • 22
    • 84929958093 scopus 로고    scopus 로고
    • Quantitative image analysis of cell colocalization in murine bone marrow
    • Mokhtari, Z., Mech, F., Zehentmeier, S., Hauser, A. E., and Figge, M. T. (2015). Quantitative image analysis of cell colocalization in murine bone marrow. Cytometry A 87, 503-512. doi: 10.1002/cyto.a.22641
    • (2015) Cytometry A , vol.87 , pp. 503-512
    • Mokhtari, Z.1    Mech, F.2    Zehentmeier, S.3    Hauser, A.E.4    Figge, M.T.5
  • 23
    • 58749112527 scopus 로고    scopus 로고
    • Discovery of a sexual cycle in the opportunistic fungal pathogen Asperigillus fumigatus
    • O'Gorman, C. M., Fuller, H. T., and Dyer, P. S. (2008). Discovery of a sexual cycle in the opportunistic fungal pathogen Asperigillus fumigatus . Nature 457, 471-474. doi: 10.1038/nature07528
    • (2008) Nature , vol.457 , pp. 471-474
    • O'Gorman, C.M.1    Fuller, H.T.2    Dyer, P.S.3
  • 24
    • 0027658896 scopus 로고
    • A review on image segmentation techniques
    • Pal, N. R., and Pal, S. K. (1993). A review on image segmentation techniques. Pattern Recognit . 26, 1277-1294. doi: 10.1016/0031-3203(93)90135-J
    • (1993) Pattern Recognit. , vol.26 , pp. 1277-1294
    • Pal, N.R.1    Pal, S.K.2
  • 25
    • 84910015015 scopus 로고    scopus 로고
    • Agent-based model of human alveoli predicts chemotactic signaling by epithelial cells during early Aspergillus fumigatus infection.
    • Pollmächer, J., and Figge, M. T. (2014). Agent-based model of human alveoli predicts chemotactic signaling by epithelial cells during early Aspergillus fumigatus infection. PLoS ONE 9:e111630. doi: 10.1371/journal.pone.0111630
    • (2014) PLoS ONE , vol.9
    • Pollmächer, J.1    Figge, M.T.2
  • 26
    • 77955632064 scopus 로고    scopus 로고
    • Characterization of biological processes through automated image analysis
    • Rittscher, J. (2010). Characterization of biological processes through automated image analysis. Annu. Rev. Biomed. Eng . 12, 315-344. doi: 10.1146/annurev-bioeng-070909-105235
    • (2010) Annu. Rev. Biomed. Eng. , vol.12 , pp. 315-344
    • Rittscher, J.1
  • 27
    • 0000950331 scopus 로고    scopus 로고
    • The watershed transform: definitions, algorithms and parallelization strategies
    • Roerdink, J. B. T. M., and Meijster, A. (2001). The watershed transform: definitions, algorithms and parallelization strategies. Fund. Inform . 41, 187-228. Available online at: http://www.cs.rug.nl/roe/publications/parwshed.pdf
    • (2001) Fund. Inform. , vol.41 , pp. 187-228
    • Roerdink, J.B.T.M.1    Meijster, A.2
  • 28
    • 0042388118 scopus 로고    scopus 로고
    • Critical role of galectin-3 in phagocytosis by macrophages
    • Sano, H., Hsu, D. K., Apgar, J. R., Yu, L., Sharma, B. B., Kuwabara, I., et al. (2003). Critical role of galectin-3 in phagocytosis by macrophages, J. Clin. Invest . 112, 389-397. doi: 10.1172/JCI200317592
    • (2003) J.Clin. Invest. , vol.112 , pp. 389-397
    • Sano, H.1    Hsu, D.K.2    Apgar, J.R.3    Yu, L.4    Sharma, B.B.5    Kuwabara, I.6
  • 29
    • 84904247113 scopus 로고    scopus 로고
    • Hyphal growth of phagocytosed Fusarium oxysporum causes cell lysis death of murine macrophages.
    • Schäfer, K., Bain, J. M., Di Pietro, A., Gow, N. A., and Erwig, L. P. (2014). Hyphal growth of phagocytosed Fusarium oxysporum causes cell lysis and death of murine macrophages. PLoS ONE 9:e101999. doi: 10.1371/journal.pone.0101999
    • (2014) PLoS ONE , vol.9
    • Schäfer, K.1    Bain, J.M.2    Di Pietro, A.3    Gow, N.A.4    Erwig, L.P.5
  • 30
    • 79251610261 scopus 로고    scopus 로고
    • Cognition Network Technology prototype of a CAD system for mammography to assist radiologists by finding similar cases in a reference database
    • Schönmeyer, R., Athelogou, M., Sittek, H., Ellenberg, P., Feehan, O., Schmidt, G., et al. (2011). Cognition Network Technology prototype of a CAD system for mammography to assist radiologists by finding similar cases in a reference database. Int. J. Comput. Assist. Radiol. Surg . 6, 127-134. doi: 10.1007/s11548-010-0486-8
    • (2011) Int. J. Comput. Assist. Radiol. Surg. , vol.6 , pp. 127-134
    • Schönmeyer, R.1    Athelogou, M.2    Sittek, H.3    Ellenberg, P.4    Feehan, O.5    Schmidt, G.6
  • 31
    • 1842422015 scopus 로고    scopus 로고
    • Survey over image thresholding techniques and quantitative performance evaluation
    • Sezgin, M., and Sankur, B. (2004). Survey over image thresholding techniques and quantitative performance evaluation. J. Electron. Imaging . 13, 146-168. doi: 10.1117/1.1631315
    • (2004) J. Electron. Imaging. , vol.13 , pp. 146-168
    • Sezgin, M.1    Sankur, B.2
  • 32
    • 84856555521 scopus 로고    scopus 로고
    • Conidial Dihydroxynaphthalene Melanin of the Human Pathogenic Fungus Aspergillus fumigatus Interferes with the Host Endocytosis Pathway.
    • Thywißen, A., Heinekamp, T., Dahse, H. M., Schmaler-Ripcke, J., Nietzsche, S., Zipfel, P. F., et al. (2011). Conidial Dihydroxynaphthalene Melanin of the Human Pathogenic Fungus Aspergillus fumigatus Interferes with the Host Endocytosis Pathway. Front. Microbiol . 3:96. doi: 10.3389/fmicb.2011.00096
    • (2011) Front. Microbiol . , vol.3 , pp. 96
    • Thywißen, A.1    Heinekamp, T.2    Dahse, H.M.3    Schmaler-Ripcke, J.4    Nietzsche, S.5    Zipfel, P.F.6
  • 33
    • 84875793655 scopus 로고    scopus 로고
    • Agent-based modeling approach of immune defense against spores of opportunistic human pathogenic fungi.
    • Tokarski, C., Hummert, S., Mech, F., Figge, M. T., Germerodt, S., Schroeter, A., et al. (2012). Agent-based modeling approach of immune defense against spores of opportunistic human pathogenic fungi. Front. Microbiol . 3:129. doi: 10.3389/fmicb.2012.00129
    • (2012) Front. Microbiol. , vol.3 , pp. 129
    • Tokarski, C.1    Hummert, S.2    Mech, F.3    Figge, M.T.4    Germerodt, S.5    Schroeter, A.6
  • 34
    • 0001884644 scopus 로고
    • Individual comparisons by ranking methods
    • Wilcoxon, F. (1945). Individual comparisons by ranking methods. Biometrics Bull . 1, 80-83. doi: 10.2307/3001968
    • (1945) Biometrics Bull. , vol.1 , pp. 80-83
    • Wilcoxon, F.1
  • 35
    • 85032752151 scopus 로고    scopus 로고
    • Informatics challenges of high-throughput microscopy
    • Zhou, X., and Wong, S. T. (2006). Informatics challenges of high-throughput microscopy. IEEE Signal Process. Mag . 23, 63-72. doi: 10.1109/MSP.2006.1628879
    • (2006) IEEE Signal Process. Mag. , vol.23 , pp. 63-72
    • Zhou, X.1    Wong, S.T.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.