Role of inter-domain cavity in the attachment of the orange carotenoid protein to the phycobilisome core and to the fluorescence recovery protein

Journal of Biomolecular Structure and Dynamics

Volumn 34, Issue 3, 2016, Pages 486-496

  Zlenko, Dmitry V ^a   Krasilnikov, Pavel M ^a   Stadnichuk, Igor N ^b,c  

^a MOSCOW STATE UNIVERSITY   (Russian Federation)

^b BACH INSTITUTE OF BIOCHEMISTRY   (Russian Federation)

^c TIMIRYAZEV INSTITUTE OF PLANT PHYSIOLOGY   (Russian Federation)

Author keywords

allophycocyanin

Indexed keywords

BACTERIAL PROTEIN; FLUORESCENCE RECOVERY PROTEIN; ORANGE CAROTENOID PROTEIN; UNCLASSIFIED DRUG; PHYCOBILISOME; PROTEIN BINDING;

AMINO TERMINAL SEQUENCE; ARTICLE; CARBOXY TERMINAL SEQUENCE; CELL ADHESION; CONTROLLED STUDY; CYANOBACTERIUM; HYDROGEN BOND; MOLECULAR MODEL; NONHUMAN; PHYCOBILISOME; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN FOLDING; PROTEIN FUNCTION; PROTEIN PROTEIN INTERACTION; QUORUM SENSING; AMINO ACID SEQUENCE; CHEMISTRY; METABOLISM; MOLECULAR DOCKING; NUCLEAR MAGNETIC RESONANCE; PROTEIN CONFORMATION;

AMINO ACID SEQUENCE; BACTERIAL PROTEINS; HYDROGEN BONDING; MODELS, MOLECULAR; MOLECULAR DOCKING SIMULATION; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PHYCOBILISOMES; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN INTERACTION DOMAINS AND MOTIFS;

EID: 84936972021     PISSN: 07391102     EISSN: 15380254     Source Type: Journal    
DOI: 10.1080/07391102.2015.1042913     Document Type: Article

References (32)

1. Adir, N. (2005). Elucidation of the molecular structures of components of the phycobilisome: Reconstructing a giant. Photosynthesis Research, 85, 15-32.
2. Ajlani, G., & Vernotte, C. (1998). Deletion of the PB-loop in the LCM subunit does not affect phycobilisome assembly or energy transfer functions in the cyanobacterium Synechocystis sp. PCC6714. European Journal of Biochemistry, 257, 154-159.
3. Baker, N., Sept, D., Joseph, S., Holst, M., & McCammon, A. (2001). Electrostatics of nanosystems: Application to microtubules and the ribosome. Proceedings of the National Academy of Sciences USA, 98, 10037-10041.
4. Boulay, C., Wilson, A., D'Haene, S., & Kirilovsky, D. (2010). Identification of a protein required for recovery of full antenna capacity in OCP-related photoprotective mechanism in cyanobacteria. Proceedings of the National Academy of Sciences USA, 107, 11620-11625.
5. Brejc, K., Ficner, R., Huber, R., & Steinbacher, S. (1995). Isolation, crystallization, crystal structure analysis and refinement of allophycocyanin from the cyanobacterium Spirulina platensis at 2.3 Å resolution. Journal of Molecular Biology, 249, 424-440.
6. Capuano, V., Braux, A.-S., Tandeau de Marsac, N., & Houmard, J. (1991). The "anchor polypeptide" of cyanobacterial phycobilisomes. Molecular characterization of the Synechococcus sp. PCC 6301 apcE gene. Journal of Biological Chemistry, 266, 7239-7247.
7. Chábera, P., Durchan, M., Shih, P., Kerfeld, C., & Polívka, T. (2011). Excited-state properties of the 16kDa red carotenoid protein from Arthrospira maxima. Biochimica et Biophysica Acta (BBA)-Bioenergetics, 1807, 30-35.
8. Gao, X., Wei, T., Zhang, N., Xie, B., Su, H., Zhang, X. Y., & Zhang, Y. Z. (2012). Molecular insights into the terminal energy acceptor in cyanobacterial phycobilisome. Molecular Microbiology, 85, 907-915.
9. Gwizdala, M., Wilson, A., & Kirilovsky, D. (2011). In vitro reconstitution system of the cyanobacterial photoprotective mechanism mediated by the orange carotenoid protein in Synechocystis PCC 6803. Plant Cell, 23, 2631-2643.
10. Gwizdala, M., Wilson, A., Omari-Nasser, A., & Kirilovsky, D. (2013). Characterization of the synechocystis PCC 6803 fluorescence recovery protein involved in photoprotection. Biochimica et Biophysica Acta (BBA)-Bioenergetics, 1827, 348-354.
11. Holt, T., & Krogmann, D. (1981). A carotenoid protein from cyanobacteria. Biochimica et Biophysica Acta (BBA)-Bioenergetics, 637, 408-414.
12. Jallet, D., Gwizdala, M., & Kirilovsky, D. (2012). ApcD, ApcF and ApcE are not required for the Orange Carotenoid Protein related phycobilisome fluorescence quenching in the cyanobacterium Synechocystis PCC 6803. Biochimica et Biophysica Acta (BBA)-Bioenergetics, 1817, 1418-1427.
13. Kerfeld, C. (2004). Structure and function of the water-soluble carotenoid-binding proteins of cyanobacteria. Photosynthesis Research, 81, 215-225.
14. Kerfeld, C., Sawaya, M. R., Vishnu, B., Cascio, D., Ho, K. K., Trevithick-Sutton, C. C., ⋯ Yeates, T. O. (2003). The crystal structure of a cyanobacterial water-soluble carotenoid binding protein. Structure, 11, 55-65.
15. Kirilovsky, D., & Kerfeld, C. (2013). The orange carotenoid protein: A blue-green light photoactive protein. Photochemical & Photobiological Sciences, 12, 1135-1143.
16. Leverenz, R., Jallet, D., Li, M., Mathies, R., Kirilovsky, D., & Kerfeld, C. (2014). Structural and functional modularity of the orange carotenoid protein: Distinct roles for the N-and C-terminal domains in cyanobacterial photoprotection. The Plant Cell, 26, 426-437.
17. Macindoe, G., Mavridis, L., Venkatraman, V., Devignes, M., & Ritchie, D. (2010). HexServer: An FFT-based protein docking server powered by graphics processors. Nucleic Acids Research, 38, W445-W449.
18. McGregor, A., Klartag, M., David, L., & Adir, N. (2008). Allophycocyanin trimer stability and functionality are primarily due to polar enhanced hydrophobicity of the phycocyanobilin binding pocket. Journal of Molecular Biology, 384, 406-421.
19. Pronk, S., Páll, S., Schulz, R., Larsson, P., Bjelkmar, P., Apostolov, R., & Lindahl L. (2013). GROMACS 4.5: A high-throughput and highly parallel open source molecular simulation toolkit. Bioinformatics, 29, 845-854.
20. Rakhimberdieva, M., Stadnichuk, I., Elanskaya, I., & Karapetyan, N. (2004). Carotenoid-induced quenching of the phycobilisome fluorescence in photosystem II-deficient mutant of Synechocystis sp. FEBS Letters, 574, 85-88.
21. Scott, M., McCollum, C., Vasil'ev, S., Crozier C, Espie GS, Krol M, ⋯ Bruce D. (2006). Mechanism of the down regulation of photosynthesis by blue light in the cyanobacterium Synechocystis sp. PCC 6803. Biochemistry, 45, 8952-8958.
22. Stadnichuk, I., Lukashev, E., & Elanskaya, I. (2009). Fluorescence changes accompanying short-term light adaptations in photosystem I and photosystem II of the cyanobacterium Synechocystis sp. PCC 6803 and phycobiliprotein-impaired mutants: State 1/State 2 transitions and carotenoid-induced quenching of phycobilisomes. Photosynthesis Research, 99, 227-241.
23. Stadnichuk, I., Yanyushin, M., Bernát, G., Zlenko, D., Krasilnikov, P., Lukashev, E., ⋯ Paschenko V. (2013). Fluorescence quenching of the phycobilisome terminal emitter LCM from the cyanobacterium Synechocystis sp. PCC 6803 detected in vivo and in vitro. Journal of Photochemistry and Photobiology B: Biology, 125, 137-145.
24. Stadnichuk, I., Yanyushin, M., Maksimov, E., Lukashev, E., Zharmukhamedov, S., Elanskaya, I., & Paschenko, V. (2012). Site of non-photochemical quenching of the phycobilisome by orange carotenoid protein in the cyanobacterium Synechocystis sp. PCC 6803. Biochimica et Biophysica Acta (BBA)-Bioenergetics, 1817, 1436-1445.
25. Stadnichuk, I., Yanyushin, M., Zhgarmukhamedov, S., Maksimov, E., Muronets, E., & Paschenko, V. (2011). Quenching of phycobilisome fluorescence by orange carotenoid-protein. Doklady Biochemistry and Biophysics, 439, 167-170.
26. Sutter, M., Wilson, A., Leverenz, R., Lopez-Igual, R., Thurotte, A., Salmeen, A., ⋯ Kerfeld C. (2013). Crystal structure of the FRP and identification of the active site for modulation of OCP-mediated photoprotection in cyanobacteria. Proceedings of the National Academy of Sciences USA, 110, 10022-10027.
27. Watanabe, W., & Ikeuchi, M. (2013). Phycobilisome: Architecture of a light-harvesting supercomplex. Photosynthesis Research, 116, 265-276.
28. Wilson, A., Ajlani, G., Verbavatz, J., Vass, I., Kerfeld, C., & Kirilovsky, D. (2006). A soluble carotenoid protein involved in phycobilisome-related energy dissipation in cyanobacteria. The Plant Cell online, 18, 992-1007.
29. Wilson, A., Gwizdala, M., Mezzettti, A., Alexandre, M., Kerfeld, C., & Kirilovsky, D. (2012). The essential role of the N-terminal domain of the orange carotenoid protein in cyanobacterial photoprotection: Importance of a positive charge for phycobilisome binding. The Plant Cell, 24, 1972-1983.
30. Wilson, A., Kinney, J., Zwart, P., Punginelli, C., D'Haene, S., Perreau, F., ⋯ Kerfeld C. (2010). Structural determinants underlying photoprotection in the photoactive orange carotenoid protein of cyanobacteria. Journal of Biological Chemistry, 285, 18364-18375.
31. Wilson, A., Punginelli, C., Gall, A., Bonetti, C., Alexandre, M., Routaboul, J., ⋯ Kirilovsky D. (2008). A photoactive carotenoid protein acting as light intensity sensor. Proceedings of the National Academy of Sciences USA, 33, 12075-12080.
32. Zhang, H., Liu, H., Niedzwiedzki, D., Prado, M., Jiang, J., Gross, M., & Blankenship, R. (2014). Molecular mechanism of photoactivation and structural location of the cyanobacterial orange carotenoid protein. Biochemistry, 53, 13-19.