Genome sequence analysis reveals evidence of quorum-sensing genes present in Aeromonas hydrophila strain M062, isolated from freshwater

Genome Announcements

Volumn 3, Issue 2, 2016, Pages

  Chan, Kok Gan ^a   Tan, Wen Si ^a   Chang, Chien Yi ^b,c   Yin, Wai Fong ^a   Mumahad Yunos, Nina Yusrina ^a  

^a UNIVERSITY OF MALAYA   (Malaysia)

^b NEWCASTLE UNIVERSITY   (United Kingdom)

^c NEWCASTLE UNIVERSITY   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84936963209     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.00100-15     Document Type: Article

References (9)

1. Fuqua WC, Winans SC, Greenberg EP. 1994. Quorum sensing in bacteria: the LuxR-LuxI family of cell density-responsive transcriptional regulators. J Bacteriol 176:269-275.
2. Atkinson S, Williams P. 2009. Quorum sensing and social networking in the microbial world. J R Soc Interface 6:959-978. http://dx.doi.org/10.1098/rsif.2009.0203.
3. Yunos NY, Tan WS, Koh CL, Sam CK, Mohamad NI, Tan PW, Adrian TG, Yin WF, Chan KG. 2014. Pseudomonas cremoricolorata strain nd07 produces N-acyl homoserine lactones as quorum sensing molecules. Sensors (Basel) 14:11595-11604. http://dx.doi.org/10.3390/s140711595.
4. Garde C, Bjarnsholt T, Givskov M, Jakobsen TH, Hentzer M, Claussen A, Sneppen K, Ferkinghoff-Borg J, Sams T. 2010. Quorum sensing regulation in Aeromonas hydrophila. J Mol Biol 396:849-857. http://dx.doi.org/10.1016/j.jmb.2010.01.002.
5. Chan XY, Chua KH, Yin WF, Puthucheary SD, Chan KG. 2014. Wholegenome analysis of Aeromonas hydrophila strain 187, exhibiting quorumsensing activity. Genome Announc 2(6):e01360-14. http://dx.doi.org/10.1128/genomeA.01360-14.
6. Hyatt D, Chen GL, LoCascio PF, Land ML, Larimer FW, Hauser LJ. 2010 Prodigal: prokaryotic gene recognition and translation initiation site identification. BMC Bioinformatics 11:119. http://dx.doi.org/10.1186/1471-2105-11-119.
7. Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, Formsma K, Gerdes S, Glass EM, Kubal M, Meyer F, Olsen GJ, Olson R, Osterman AL, Overbeek RA, McNeil LK, Paarmann D, Paczian T, Parrello B, Pusch GD, Reich C, Stevens R, Vassieva O, Vonstein V, Wilke A, Zagnitko O. 2008 The RAST server: Rapid Annotations using Subsystems Technology. BMC Genomics 9:75. http://dx.doi.org/10.1186/1471-2164-9-75.
8. Lowe TM, Eddy SR. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 25: 955-964. http://dx.doi.org/10.1093/nar/25.5.0955.
9. Lagesen K, Hallin P, R�dland EA, Staerfeldt HH, Rognes T, Ussery DW. 2007 RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res 35:3100-3108. http://dx.doi.org/10.1093/nar/gkm160.