Molecular Epidemiology of Genogroup II Noroviruses Infection in Outpatients with Acute Gastroenteritis in Nanjing, China (2010-2013)

BioMed Research International

Volumn 2014, Issue , 2014, Pages

  Hong Ying, Zhang ^a   Li Min, Shi ^a   Wei, Li ^a   Xuan, Wang ^a   Meng Kai, Qiao ^a   Min, He ^a   Yan, Wang ^a   Guo Xiang, Xie ^a  

^a NANJING MUNICIPAL CENTER FOR DISEASE CONTROL AND PREVENTION   (China)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS RNA;

ACUTE GASTROENTERITIS; ADENOVIRIDAE; CHINA; CLONING; GENE AMPLIFICATION; GENE SEQUENCE; GENOGROUP II NOROVIRUS INFECTION; GENOTYPE; HUMAN; HUMAN ASTROVIRUS; HUMAN ENTERIC ADENOVIRUS; HUMAN ROTAVIRUS; INCIDENCE; MAJOR CLINICAL STUDY; MOLECULAR EPIDEMIOLOGY; NOROVIRUS INFECTION; NUCLEOTIDE SEQUENCE; OUTPATIENT; PHYLOGENY; REAL TIME POLYMERASE CHAIN REACTION; REVIEW; ROTAVIRUS INFECTION; SAPOVIRUS; VIRUS DETECTION; VIRUS GENE; VIRUS STRAIN; VIRUS VIRULENCE; ACUTE DISEASE; AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; CALICIVIRIDAE INFECTIONS; FECES; GASTROENTERITIS; GENETIC VARIABILITY; GENETICS; MOLECULAR GENETICS; NOROVIRUS; PHYSIOLOGY; ROTAVIRUS; STATISTICS AND NUMERICAL DATA; VIROLOGY;

ADENOVIRIDAE; HUMAN ASTROVIRUS; HUMAN ROTAVIRUS A; ROTAVIRUS; SAPOVIRUS;

ACUTE DISEASE; AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; CALICIVIRIDAE INFECTIONS; CHINA; FECES; GASTROENTERITIS; GENETIC VARIATION; GENOTYPE; HUMANS; MOLECULAR EPIDEMIOLOGY; MOLECULAR SEQUENCE DATA; NOROVIRUS; OUTPATIENTS; PHYLOGENY; REAL-TIME POLYMERASE CHAIN REACTION; ROTAVIRUS;

EID: 84935861926     PISSN: 23146133     EISSN: 23146141     Source Type: Journal    
DOI: 10.1155/2014/620740     Document Type: Review

References (34)

1. U. D. Parashar, E. G. Hummelman, J. S. Bresee, M. A. Miller, and R. I. Glass, "Global illness and deaths caused by rotavirus disease in children, " Emerging Infectious Diseases, vol. 9, no. 5, pp. 565-572, 2003.
2. Technical Fact Sheet, http://www. cdc. gov/norovirus/php/illness-outbreaks. html.
3. R. Dolin, "Noroviruses-challenges to control, " The New England Journal of Medicine, vol. 357, no. 11, pp. 1072-1073, 2007.
4. P. Howley, D. Knipe, and B. Fields, Field's Virology, Lippincott, Williams &Wilkins, Philadelphia, Pa, USA, 5th edition, 2007.
5. P. Chhabra, D. C. Payne, P. G. Szilagyi, et al., "Etiology of viral gastroenteritis in children <5 years of age in the United States, 2008-2009, " Journal of Infectious Diseases, vol. 208, no. 5, pp. 790800, 2013.
6. K. Y. Green, "Caliciviridae: the noroviruses, " in Fields Virology, D. M. Knipe, P. M. Howley, D. E. Griffin, et al., Eds., vol. 1, pp. 949-979, Lippincott Williams & Wilkins, Philadelphia, Pa, USA, 5th edition, 2007.
7. V. Martella, M. Campolo, E. Lorusso, et al., "Norovirus in captive lion cub (Panthera leo), "Emerging InfectiousDiseases, vol. 13, no. 7, pp. 1071-1073, 2007.
8. Q. Wang, G. H. Myung, S. Cheetham, M. Souza, J. A. Funk, and L. J. Saif, "Porcine noroviruses related to human noroviruses, " Emerging Infectious Diseases, vol. 11, no. 12, pp. 1874-1881, 2005.
9. D. Zheng, T. Ando, R. L. Fankhauser, R. S. Beard, R. I. Glass, and S. S. Monroe, "Norovirus classification and proposed strain nomenclature, " Virology, vol. 346, no. 2, pp. 312-323, 2006.
10. D. P. Zheng, M. A. Widdowson, R. I. Glass, and J. Vinje, "Molecular epidemiology of genogroup II-genotype 4 noroviruses in the United States between 1994 and 2006, " Journal of Clinical Microbiology, vol. 48, no. 1, pp. 168-177, 2010.
11. R. A. Bull, J. S. Eden, W. D. Rawlinson, and P. A. White, "Rapid evolution of pand emic noroviruses of the GII. 4 lineage, " PLoS Pathogens, vol. 6, no. 3, Article ID e1000831, 2010.
12. A. A. Trujillo, K. A. McCaustland, D.-P. Zheng, et al., "Use of TaqMan real-time reverse transcription-PCR for rapid detection, quantification, and typing of norovirus, " Journal of Clinical Microbiology, vol. 44, no. 4, pp. 1405-1412, 2006.
13. R. N. Gunson, T. C. Collins, and W. F. Carman, "The real-time detection of sapovirus, " Journal of Clinical Virology, vol. 35, no. 3, pp. 321-322, 2006.
14. M. M. Freeman, T. Kerin, J. Hull, K. McCaustland, and J. Gentsch, "Enhancement of detection and quantification of rotavirus in stool using a modified real-time RT-PCR assay, " Journal of Medical Virology, vol. 80, no. 8, pp. 1489-1496, 2008.
15. P. Le Cann, S. Ranarijaona, S. Monpoeho, F. Le Guyader, and V. Ferre, "Quantification of human astroviruses in sewage using real-time RT-PCR, " Research in Microbiology, vol. 155, no. 1, pp. 11-15, 2004.
16. C. Logan, J. J. OLeary, and N. OSullivan, "Real-time reverse transcription-PCR for detection of rotavirus and adenovirus as causative agents of acute viral gastroenteritis in children, " Journal of Clinical Microbiology, vol. 44, no. 9, pp. 3189-3195, 2006.
17. T. A. Hall, "BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT, " Nucleic Acids Symposium Series, vol. 41, pp. 95-98, 1999.
18. T. G. Burland, "DNASTARs Lasergene sequence analysis software, " Methods in Molecular Biology, vol. 132, pp. 71-91, 2000.
19. K. Tamura, D. Peterson, N. Peterson, G. Stecher, M. Nei, and S. Kumar, "MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods, " Molecular Biology and Evolution, vol. 28, no. 10, pp. 2731-2739, 2011.
20. N. Saitou and M. Nei, "The neighbor-joining method: a new method for reconstructing phylogenetic trees, " Molecular Biology and Evolution, vol. 4, no. 4, pp. 406-425, 1987.
21. M. Kimura, "A simplemethod for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences, " Journal of Molecular Evolution, vol. 16, no. 2, pp. 111-120, 1980.
22. Y. Zhai, J. Tchieu, and M. H. Saier Jr., "A web-based Tree View (TV) program for the visualization of phylogenetic trees, " Journal of Molecular Microbiology and Biotechnology, vol. 4, no. 1, pp. 69-70, 2002.
23. Z. Zhang, S. Schwartz, L. Wagner, and W. Miller, "A greedy algorithm for aligning DNA sequences, " Journal of Computational Biology, vol. 7, no. 1-2, pp. 203-214, 2000.
24. A. Morgulis, G. Coulouris, Y. Raytselis, T. L. Madden, R. Agarwala, and A. A. Schaffer, "Database indexing for production MegaBLAST searches, " Bioinformatics, vol. 24, no. 16, pp. 1757-1764, 2008.
25. P. Wu, Q. Zhang, Y. P. Qin, C. Gao, R. X. Su, and H. Y. Zhang, "Epidmiology of infectious diarrhea diagnosed clinically in prosperous economy aera: analysis of 1240 patients, " Chinese Journal of Nosocomiology, vol. 21, no. 18, pp. 3886-3888, 2011.
26. R. Chen, J. D. Neill, J. S. Noel, et al., "Inter-and intragenus structural variations in caliciviruses and their functional implications, " Journal of Virology, vol. 78, no. 12, pp. 6469-6479, 2004.
27. L. Lu, H. Zhong, M. Xu, et al., "Molecular epidemiology of human calicivirus infections in children with acute diarrhea in Shanghai: a retrospective comparison between inpatients and outpatients treated between 2006 and 2011, " Archives of Virology, vol. 159, no. 7, pp. 1613-1621, 2014.
28. X. L. Li, D. D. Li, W. X. Cheng, et al., "Molecular and epidemiological study on among children under 5 years old in Nanjing, " Zhonghua Shi Yan He Lin Chuang Bing Du Xue Za Zhi, vol. 26, no. 1, pp. 14-17, 2012.
29. Z. Shen, G. Wang, S. B. Zai, Y. W. Hu, Z. H. Yuan, and J. Zhang, "The emergence of novel GII. 4 norovirus variant, Sydney-2012, in Shanghai, China, " Bing Du Xue Bao, vol. 29, no. 6, pp. 608-614, 2012.
30. J. G. Fu, J. Ai, M. Jin, et al., "Molecular characteristics of acute gastrocenteritis outbreaks caused by norovirus, in Jiangsu province, " Zhonghua Liu Xing Bing Xue Za Zhi, vol. 34, no. 8, pp. 808-811, 2013.
31. K. Y. Green, J. F. Lew, X. Jiang, A. Z. Kapikian, and M. K. Estes, "Comparison of the reactivities of baculovirus-expressed recombinant Norwalk virus capsid antigen with those of the native Norwalk virus antigen in serologic assays and some epidemiologic observations, " Journal of Clinical Microbiology, vol. 31, no. 8, pp. 2185-2191, 1993.
32. T. Yoda, Y. Terano, Y. Suzuki, et al., "Characterization of Norwalk virus GI specific monoclonal antibodies generated against Escherichia coli expressed capsid protein and the reactivity of two broadly reactive monoclonal antibodies generated against GII capsid towards GI recombinant fragments, " BMC Microbiology, vol. 1, article 24, 2001.
33. S. Chakravarty, A. M. Hutson, M. K. Estes, and B. V. V. Prasad, "Evolutionary trace residues in noroviruses: importance in receptor binding, antigenicity, virion assembly, and strain diversity, " Journal of Virology, vol. 79, no. 1, pp. 554-568, 2005.
34. L. Chen, D. Wu, L. Ji, et al., "Bioinformatics analysis of the epitope regions for norovirus capsid protein, " BMC Bioinformatics, vol. 14, article S5, 2013.