메뉴 건너뛰기




Volumn 6, Issue June, 2015, Pages

Measuring information flow in cellular networks by the systems biology method through microarray data

Author keywords

Gene regulatory network; Information flow; Information transductivity; Microarray data; Signal transduction pathway; Signal transductivity; System theory

Indexed keywords


EID: 84935856031     PISSN: None     EISSN: 1664462X     Source Type: Journal    
DOI: 10.3389/fpls.2015.00390     Document Type: Article
Times cited : (10)

References (32)
  • 2
    • 84867478074 scopus 로고    scopus 로고
    • On the information transmission ability of nonlinear stochastic dynamic networks
    • Chen, B. S., and Lin, Y. P. (2012). On the information transmission ability of nonlinear stochastic dynamic networks. Entropy 14, 1652-1670. doi: 10.3390/e14091652
    • (2012) Entropy , vol.14 , pp. 1652-1670
    • Chen, B.S.1    Lin, Y.P.2
  • 3
    • 33645813418 scopus 로고    scopus 로고
    • On the attenuation and amplification of molecular noise in genetic regulatory networks
    • Chen, B. S., and Wang, Y. C. (2006). On the attenuation and amplification of molecular noise in genetic regulatory networks. BMC Bioinformatics 7:52. doi: 10.1186/1471-2105-7-52
    • (2006) BMC Bioinformatics , vol.7 , pp. 52
    • Chen, B.S.1    Wang, Y.C.2
  • 4
    • 84863518282 scopus 로고    scopus 로고
    • On the calculation of signal transduction ability of signaling transduction pathways in intracellular communication: Systematic approach
    • Chen, B. S., and Wu, C. C. (2012). On the calculation of signal transduction ability of signaling transduction pathways in intracellular communication: systematic approach. Bioinformatics 28, 1604-1611. doi: 10.1093/bioinformatics/bts159
    • (2012) Bioinformatics , vol.28 , pp. 1604-1611
    • Chen, B.S.1    Wu, C.C.2
  • 5
    • 78650971749 scopus 로고    scopus 로고
    • Multisource prediction under nonlinear dynamics in WSNs using a Robust fuzzy approach
    • Chiu, W. Y., and Chen, B. S. (2011). Multisource prediction under nonlinear dynamics in WSNs using a Robust fuzzy approach. IEEE Trans. Circuits Syst. I Regular Papers 58, 137-149. doi: 10.1109/TCSI.2010.2055331
    • (2011) IEEE Trans. Circuits Syst. I Regular Papers , vol.58 , pp. 137-149
    • Chiu, W.Y.1    Chen, B.S.2
  • 6
    • 77955977167 scopus 로고    scopus 로고
    • The Wnt/beta-catenin pathway modulates vascular remodeling and specification by upregulating DII4/notch signaling
    • Corada, M., Nyqvist, D., Orsenigo, F., Caprini, A., Giampietro, C., Taketo, M. M., et al. (2010). The Wnt/beta-catenin pathway modulates vascular remodeling and specification by upregulating DII4/notch signaling. Dev. Cell 18, 938-949. doi: 10.1016/j.devcel.2010.05.006
    • (2010) Dev. Cell , vol.18 , pp. 938-949
    • Corada, M.1    Nyqvist, D.2    Orsenigo, F.3    Caprini, A.4    Giampietro, C.5    Taketo, M.M.6
  • 7
    • 77951889295 scopus 로고    scopus 로고
    • The mammalian circadian timing system: Organization and coordination of central and peripheral clocks
    • Dibner, C., Schibler, U., and Albrecht, U. (2010). The mammalian circadian timing system: organization and coordination of central and peripheral clocks. Annu. Rev. Physiol. 72, 517-549. doi: 10.1146/annurev-physiol-021909-135821
    • (2010) Annu. Rev. Physiol , vol.72 , pp. 517-549
    • Dibner, C.1    Schibler, U.2    Albrecht, U.3
  • 8
    • 77952530584 scopus 로고    scopus 로고
    • The language of calcium signaling
    • Dodd, A. N., Kudla, J., and Sanders, D. (2010). The language of calcium signaling. Annu. Rev. Plant Biol. 61, 593-620. doi: 10.1146/annurev-arplant-070109-104628
    • (2010) Annu. Rev. Plant Biol , vol.61 , pp. 593-620
    • Dodd, A.N.1    Kudla, J.2    Sanders, D.3
  • 10
    • 64949137056 scopus 로고    scopus 로고
    • Epicuticular lipids induce aggregation in Chagas disease vectors
    • Figueiras, A. N. L., Girotti, J. R., Mijailovsky, S. J., and Juarez, M. P. (2009). Epicuticular lipids induce aggregation in Chagas disease vectors. Parasites Vectors 2:8. doi: 10.1186/1756-3305-2-8
    • (2009) Parasites Vectors , vol.2 , pp. 8
    • Figueiras, A.1    Girotti, J.R.2    Mijailovsky, S.J.3    Juarez, M.P.4
  • 11
    • 77955134007 scopus 로고    scopus 로고
    • Clinical utility of microarray-based gene expression profiling in the diagnosis and subclassification of leukemia: Report from the International Microarray Innovations in Leukemia Study Group
    • Haferlach, T., Kohlmann, A., Wieczorek, L., Basso, G., Kronnie, G. T., Bene, M. C., et al. (2010). Clinical utility of microarray-based gene expression profiling in the diagnosis and subclassification of leukemia: report from the International Microarray Innovations in Leukemia Study Group. J. Clin. Oncol. 28, 2529-2537. doi: 10.1200/JCO.2009.23.4732
    • (2010) J. Clin. Oncol , vol.28 , pp. 2529-2537
    • Haferlach, T.1    Kohlmann, A.2    Wieczorek, L.3    Basso, G.4    Kronnie, G.T.5    Bene, M.C.6
  • 13
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: Kyoto encyclopedia of genes and genomes
    • Kanehisa, M., and Goto, S. (2000). KEGG: Kyoto encyclopedia of genes and genomes. Nucleic Acids Res. 28, 27-30. doi: 10.1093/nar/28.1.27
    • (2000) Nucleic Acids Res , vol.28 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2
  • 14
  • 15
    • 76749088358 scopus 로고    scopus 로고
    • Pathological roles of MAPK signaling pathways in human diseases
    • Kim, E. K., and Choi, E. J. (2010). Pathological roles of MAPK signaling pathways in human diseases. Biochim. Biophys. Acta 1802, 396-405. doi: 10.1016/j.bbadis.2009.12.009
    • (2010) Biochim. Biophys. Acta , vol.1802 , pp. 396-405
    • Kim, E.K.1    Choi, E.J.2
  • 16
    • 77952466564 scopus 로고    scopus 로고
    • Guard cell signal transduction network: Advances in understanding abscisic acid, CO2, and Ca2+ Signaling
    • Kim, T. H., Bohmer, M., Hu, H. H., Nishimura, N., and Schroeder, J. I. (2010). Guard cell signal transduction network: advances in understanding abscisic acid, CO2, and Ca2+ Signaling. Annu. Rev. Plant Biol. 61, 561-591. doi: 10.1146/annurev-arplant-042809-112226
    • (2010) Annu. Rev. Plant Biol , vol.61 , pp. 561-591
    • Kim, T.H.1    Bohmer, M.2    Hu, H.H.3    Nishimura, N.4    Schroeder, J.I.5
  • 18
    • 0019996706 scopus 로고
    • Amplification and adaptation in regulatory and sensory systems
    • Koshland, D. E., Goldbeter, A., and Stock, J. B. (1982). Amplification and adaptation in regulatory and sensory systems. Science 217, 220-225. doi: 10.1126/science.7089556
    • (1982) Science , vol.217 , pp. 220-225
    • Koshland, D.E.1    Goldbeter, A.2    Stock, J.B.3
  • 20
    • 78649378267 scopus 로고    scopus 로고
    • MicroRNA functions in stress responses
    • Leung, A. K. L., and Sharp, P. A. (2010). MicroRNA functions in stress responses. Mol. Cell 40, 205-215. doi: 10.1016/j.molcel.2010.09.027
    • (2010) Mol. Cell , vol.40 , pp. 205-215
    • Leung, A.1    Sharp, P.A.2
  • 21
    • 77952510758 scopus 로고    scopus 로고
    • Identifying functional mechanisms of gene and protein regulatory networks in response to a broader range of environmental stresses
    • Li, C.-W., and Chen, B.-S. (2010). Identifying functional mechanisms of gene and protein regulatory networks in response to a broader range of environmental stresses. Comp. Funct. Genomics 2010:408705. doi: 10.1155/2010/408705
    • (2010) Comp. Funct. Genomics , vol.2010 , pp. 408705
    • Li, C.-W.1    Chen, B.-S.2
  • 22
    • 39849087243 scopus 로고    scopus 로고
    • A systematic approach to detecting transcription factors in response to environmental stresses
    • Lin, L. H., Lee, H. C., Li, W. H., and Chen, B. S. (2007). A systematic approach to detecting transcription factors in response to environmental stresses. BMC Bioinformatics 8:473. doi: 10.1186/1471-2105-8-473
    • (2007) BMC Bioinformatics , vol.8 , pp. 473
    • Lin, L.H.1    Lee, H.C.2    Li, W.H.3    Chen, B.S.4
  • 23
    • 0026574205 scopus 로고
    • Sexual agglutination in budding yeasts -Bstructure, function, and regulation of adhesion glycoproteins
    • Lipke, P. N., and Kurjan, J. (1992). Sexual agglutination in budding yeasts - structure, function, and regulation of adhesion glycoproteins. Microbiol. Rev. 56, 180-194.
    • (1992) Microbiol. Rev , vol.56 , pp. 180-194
    • Lipke, P.N.1    Kurjan, J.2
  • 24
    • 79953240219 scopus 로고    scopus 로고
    • Amplification of the driving oncogene, KRAS or BRAF, underpins acquired resistance to MEK1/2 inhibitors in colorectal cancer cells
    • Little, A. S., Balmanno, K., Sale, M. J., Newman, S., Dry, J. R., Hampson, M., et al. (2011). Amplification of the driving oncogene, KRAS or BRAF, underpins acquired resistance to MEK1/2 inhibitors in colorectal cancer cells. Sci. Signal. 4:ra17. doi: 10.1126/scisignal.2001752
    • (2011) Sci. Signal , vol.4
    • Little, A.S.1    Balmanno, K.2    Sale, M.J.3    Newman, S.4    Dry, J.R.5    Hampson, M.6
  • 25
    • 84902212163 scopus 로고    scopus 로고
    • Synchronization of developmental processes and defense signaling by growth regulating transcription factors
    • Liu, J. Y., Rice, J. H., Chen, N. N., Baum, T. J., and Hewezi, T. (2014). Synchronization of developmental processes and defense signaling by growth regulating transcription factors. PLOS ONE 9:e98477. doi: 10.1371/journal.pone.0098477
    • (2014) PLOS ONE , vol.9
    • Liu, J.Y.1    Rice, J.H.2    Chen, N.N.3    Baum, T.J.4    Hewezi, T.5
  • 26
    • 33644876958 scopus 로고    scopus 로고
    • TRANSFAC (R) and its module TRANSCompel (R): Transcriptional gene regulation in eukaryotes
    • Matys, V., Kel-Margoulis, O. V., Fricke, E., Liebich, I., Land, S., Barre-Dirrie, A., et al. (2006). TRANSFAC (R) and its module TRANSCompel (R): transcriptional gene regulation in eukaryotes. Nucleic Acids Res. 34, D108-D110. doi: 10.1093/nar/gkj143
    • (2006) Nucleic Acids Res , vol.34
    • Matys, V.1    Kel-Margoulis, O.V.2    Fricke, E.3    Liebich, I.4    Land, S.5    Barre-Dirrie, A.6
  • 27
    • 79952695731 scopus 로고    scopus 로고
    • Cyclic AMP-mediated immune regulation- overview of mechanisms of action in T cells
    • Mosenden, R., and Tasken, K. (2011). Cyclic AMP-mediated immune regulation- overview of mechanisms of action in T cells. Cell. Signal. 23, 1009-1016. doi: 10.1016/j.cellsig.2010.11.018
    • (2011) Cell. Signal , vol.23 , pp. 1009-1016
    • Mosenden, R.1    Tasken, K.2
  • 28
    • 84859422316 scopus 로고    scopus 로고
    • Signalling and sex in the social amoebozoans
    • O’day, D. H., and Keszei, A. (2012). Signalling and sex in the social amoebozoans. Biol. Rev. 87, 313-329. doi: 10.1111/j.1469-185X.2011.00200.x
    • (2012) Biol. Rev , vol.87 , pp. 313-329
    • O’day, D.H.1    Keszei, A.2
  • 30
    • 79961187296 scopus 로고    scopus 로고
    • Open cascades as simple solutions to providing ultrasensitivity and adaptation in cellular signaling
    • Srividhya, J., Li, Y. F., and Pomerening, J. R. (2011). Open cascades as simple solutions to providing ultrasensitivity and adaptation in cellular signaling. Phys. Biol. 8:046005. doi: 10.1088/1478-3975/8/4/046005
    • (2011) Phys. Biol , vol.8
    • Srividhya, J.1    Li, Y.F.2    Pomerening, J.R.3
  • 31
    • 77954541844 scopus 로고    scopus 로고
    • Single-cell NF-kappa B dynamics reveal digital activation and analogue information processing
    • Tay, S., Hughey, J. J., Lee, T. K., Lipniacki, T., Quake, S. R., and Covert, M. W. (2010). Single-cell NF-kappa B dynamics reveal digital activation and analogue information processing. Nature 466, 267-271. doi: 10.1038/nature09145
    • (2010) Nature , vol.466 , pp. 267-271
    • Tay, S.1    Hughey, J.J.2    Lee, T.K.3    Lipniacki, T.4    Quake, S.R.5    Covert, M.W.6
  • 32
    • 84918558622 scopus 로고    scopus 로고
    • ERK oscillation-dependent gene expression patterns and deregulation by stress response
    • Waters, K. M., Cummings, B. S., Shankaran, H., Scholpa, N. E., and Weber, T. J. (2014). ERK oscillation-dependent gene expression patterns and deregulation by stress response. Chem. Res. Toxicol. 27, 1496-1503. doi: 10.1021/tx500085u
    • (2014) Chem. Res. Toxicol , vol.27 , pp. 1496-1503
    • Waters, K.M.1    Cummings, B.S.2    Shankaran, H.3    Scholpa, N.E.4    Weber, T.J.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.