Advanced Heat Map and Clustering Analysis Using Heatmap3

BioMed Research International

Volumn 2014, Issue , 2014, Pages

  Zhao, Shilin ^a   Guo, Yan ^a   Sheng, Quanhu ^a   Shyr, Yu ^a  

^a VANDERBILT UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

RNA;

ARTICLE; CLUSTER ANALYSIS; COLOR; GENE EXPRESSION; HEAT MAP; MATHEMATICAL ANALYSIS; PHENOTYPE; PHYLOGENETIC TREE; PRODUCTIVITY; BREAST TUMOR; FEMALE; GENETIC DATABASE; GENETICS; GENOMICS; HUMAN; MOLECULAR GENETICS; PROCEDURES; SOFTWARE; TUMOR GENE;

BREAST NEOPLASMS; CLUSTER ANALYSIS; DATABASES, GENETIC; FEMALE; GENES, NEOPLASM; GENOMICS; HUMANS; MOLECULAR SEQUENCE ANNOTATION; SOFTWARE;

EID: 84935848579     PISSN: 23146133     EISSN: 23146141     Source Type: Journal    
DOI: 10.1155/2014/986048     Document Type: Article

References (8)

1. Y. Guo, S. Zhao, F. Ye, Q. Sheng, and Y. Shyr, "MultiRankSeq: multiperspective approach for RNAseq differential expression analysis and quality control, " BioMed Research International, vol. 2014, Article ID248090, 8 pages, 2014.
2. S. Yang, X. Guo, Y. Yang et al., "Detecting outlier microarray arrays by correlation and percentage of outliers spots, " Cancer Informatics, vol. 2, pp. 351-360, 2006.
3. A. Sadanand am, C. A. Lyssiotis, K. Homicsko et al., "Acolorectal cancer classification system that associates cellular phenotype and responses to therapy, " Nature Medicine, vol. 19, no. 5, pp. 619-625, 2013.
4. Cancer Genome Atlas Network, "Comprehensive molecular portraits of human breast tumours, " Nature, vol. 490, pp. 61-70, 2012.
5. J. M. Lee and E. L. L. Sonnhammer, "Genomic gene clustering analysis of pathways in eukaryotes, " Genome Research, vol. 13, no. 5, pp. 875-882, 2003.
6. P. DHaeseleer, S. Liang, and R. Somogyi, "Genetic network inference: from co-expression clustering to reverse engineering, " Bioinformatics, vol. 16, no. 8, pp. 707-726, 2000.
7. M. B. Eisen, P. T. Spellman, P. O. Brown, and D. Botstein, "Cluster analysis and display of genome-wide expression patterns, " Proceedings of the National Academy of Sciences of the United States of America, vol. 95, no. 25, pp. 14863-14868, 1998.
8. M. D. Robinson, D. J. McCarthy, and G. K. Smyth, "edgeR: a Bioconductor package for differential expression analysis of digital gene expression data., " Bioinformatics, vol. 26, no. 1, pp. 139-140, 2010.