Integron, plasmid and host strain characteristics of Escherichia coli from humans and food included in the Norwegian antimicrobial resistance monitoring programs

PLoS ONE

Volumn 10, Issue 6, 2015, Pages

  Sunde, Marianne ^a   Simonsen, Gunnar Skov ^b,c   Slettemeås, Jannice Schau ^a   Böckerman, Inger ^a   Norström, Madelaine ^a  

^a NORWEGIAN VETERINARY INSTITUTE   (Norway)

^b UNIVERSITY HOSPITAL OF NORTH NORWAY   (Norway)

^c Faculty of Health Sciences   (Norway)

Author keywords

[No Author keywords available]

Indexed keywords

ANTIBIOTIC AGENT; KANAMYCIN; NALIDIXIC ACID; QUINOLINE DERIVED ANTIINFECTIVE AGENT; SULFONAMIDE;

AADA1 GENE; ANTIBIOTIC RESISTANCE; ARTICLE; BACTERIAL GENE; BACTERIAL STRAIN; BACTERIAL TRANSMISSION; BACTERIUM ISOLATE; BLOODSTREAM INFECTION; CLONAL EVOLUTION; CONTROLLED STUDY; DFRA1 AADA1 GENE; DFRA1 SAT1 AADA1 GENE; DFRA12 ORFF AADA2 GENE; DFRA17 AADA5 GENE; DRFA1 AADA1 GENE; DRUG MONITORING; ESCHERICHIA COLI; ESCHERICHIA COLI INFECTION; GENE CASSETTE; GENE IDENTIFICATION; GENE LOCATION; GENE SEQUENCE; GENETIC LINKAGE; HEALTH PROGRAM; HETEROZYGOTE; HOST PATHOGEN INTERACTION; INTEGRON; MEAT; NONHUMAN; NORWAY; OXA 30 AADA1 GENE; PLASMID; POLYMERASE CHAIN REACTION; PREVALENCE; PULSED FIELD GEL ELECTROPHORESIS; REPLICON; SEPTICEMIA; SEROTYPE; STRAIN DIFFERENCE; ANIMAL; BOVINE; ESCHERICHIA COLI INFECTIONS; GENETICS; HUMAN; ISOLATION AND PURIFICATION; MICROBIOLOGY; PIG; POULTRY;

ESCHERICHIA COLI;

ANIMALS; CATTLE; DRUG RESISTANCE, BACTERIAL; ESCHERICHIA COLI; ESCHERICHIA COLI INFECTIONS; HUMANS; INTEGRONS; MEAT; MEAT PRODUCTS; NORWAY; PLASMIDS; POULTRY; SWINE;

EID: 84934906995     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0128797     Document Type: Article

References (42)

1. Sunde M. Prevalence and characterization of class 1 and class 2 integrons in Escherichia coli isolated from meat and meat products of Norwegian origin. J Antimicrob Chemother. 2005; 56:1019-1024. PMID: 16239286
2. Sunde M, Norström M. The prevalence of, associations between and conjugal transfer of antibiotic resistance genes in Escherichia coli isolated from Norwegian meat and meat products. J Antimicrob Chemother. 2006; 58:741-747. PMID: 16931539
3. Carattoli A. Importance of integrons in the diffusion of resistance. Vet Res. 2001; 32:243-259. PMID: 11432416
4. Fluit AC, Schmitz FJ. Resistance integrons and super-integrons. Clin Microbiol Infect. 2004; 10:272-288. PMID: 15059115
5. Stokes HW, Hall RM. A novel family of potentially mobile DNA elements encoding site-specific gene-integration functions: integrons. Mol Microbiol. 1989; 3:1669-1683. PMID: 2560119
6. Recchia GD, Hall RM. Gene cassettes: a new class of mobile element. Microbiology. 1995; 141 (Pt 12):3015-3027. PMID: 8574395
7. VIM-2 in clinical isolates of Pseudomonas aeruginosa. J Med Microbiol. 2009; 58:1080-1085. doi: 10.1099/jmm.0.010017-0 PMID: 19528141
8. Kang HY, Jeong YS, Oh JY, Tae SH, Choi CH, Moon DC, et al. Characterization of antimicrobial resistance and class 1 integrons found in Escherichia coli isolates from humans and animals in Korea. J Antimicrob Chemother. 2005; 55:639-644. PMID: 15761064
9. van Essen-Zandbergen A, Smith H, Veldman K, Mevius D. Occurrence and characteristics of class 1, 2 and 3 integrons in Escherichia coli, Salmonella and Campylobacter spp. in the Netherlands. J Antimicrob Chemother. 2007; 59:746-750. PMID: 17307772
10. Vinue L, Saenz Y, Somalo S, Escudero E, Moreno MA, Ruiz-Larrea F, et al. Prevalence and diversity of integrons and associated resistance genes in faecal Escherichia coli isolates of healthy humans in Spain. J Antimicrob Chemother. 2008; 62:934-937. doi: 10.1093/jac/dkn331 PMID: 18708645
11. Machado E, Ferreira J, Novais A, Peixe L, Canton R, Baquero F, et al. Preservation of integron types among Enterobacteriaceae producing extended-spectrum beta-lactamases in a Spanish hospital over a 15-year period (1988 to 2003). Antimicrob Agents Chemother. 2007; 51:2201-2204. PMID: 17404002
12. Ruiz del Castillo B, Vinue L, Roman EJ, Guerra B, Carattoli A, Torres C, et al. Molecular characterization of multiresistant Escherichia coli producing or not extended-spectrum beta-lactamases. BMC Microbiol. 2013; 13:84. doi: 10.1186/1471-2180-13-84 PMID: 23586437
13. Machado E, Coque TM, Canton R, Sousa JC, Peixe L. Commensal Enterobacteriaceae as reservoirs of extended-spectrum beta-lactamases, integrons, and sul genes in Portugal. Front Microbiol. 2013; 4:80. doi: 10.3389/fmicb.2013.00080 PMID: 23579192
14. Kluytmans JA, Overdevest IT, Willemsen I, Kluytmans-van den Bergh MF, van der Zwaluw K, Heck M, et al. Extended-spectrum beta-lactamase-producing Escherichia coli from retail chicken meat and humans: comparison of strains, plasmids, resistance genes, and virulence factors. Clin Infect Dis. 2013; 56:478-487. doi: 10.1093/cid/cis929 PMID: 23243181
15. Johnson JR, McCabe JS, White DG, Johnston B, Kuskowski MA, McDermott P. Molecular Analysis of Escherichia coli from retail meats (2002-2004) from the United States National Antimicrobial Resistance Monitoring System. Clin Infect Dis. 2009; 49:195-201. doi: 10.1086/599830 PMID: 19508167
16. Hannah EL, Johnson JR, Angulo F, Haddadin B, Williamson J, Samore MH. Molecular analysis of antimicrobial-susceptible and-resistant Escherichia coli from retail meats and human stool and clinical specimens in a rural community setting. Foodborne Pathog Dis. 2009; 6:285-295. doi: 10.1089/fpd.2008.0176 PMID: 19272007
17. Anonymous. NORM/NORM-VET 2000. Consumption of Antimicrobial Agents and Occurrence of Antimicrobial Resistance in Norway. Tromsø/Oslo: Norwegian Veterinary Institute/University Hospital of North Norway.2000 Available from: www.vetinst.no/www.antibiotikaresistens.no.
18. Anonymous. NORM/NORM-VET 2001. Consumption of Antimicrobial Agents and Occurrence of Antimicrobial Resistance in Norway. Tromsø/Oslo: Norwegian Veterinary Institute/University Hospital of North Norway.2001 Available from: www.vetinst.no/www.antibiotikaresistens.no.
19. Anonymous. NORM/NORM-VET 2002. Consumption of Antimicrobial Agents and Occurrence of Antimicrobial Resistance in Norway. Tromsø/Oslo: Norwegian Veterinary Institute/University Hospital of North Norway.2002 Available from: www.vetinst.no/www.antibiotikaresistens.no.
20. Anonymous. NORM/NORM-VET 2003. Usage of Antimicrobial Agents and Occurrence of Antimicrobial Resistance in Norway. Tromsø/Oslo: Norwegian Veterinary Institute/University Hospital of North Norway.2003 Available from: www.vetinst.no/www.antibiotikaresistens.no.
21. White PA, McIver CJ, Rawlinson WD. Integrons and gene cassettes in the enterobacteriaceae. Antimicrob Agents Chemother. 2001; 45:2658-2661. PMID: 11502548
22. Levesque C, Piche L, Larose C, Roy PH. PCR mapping of integrons reveals several novel combinations of resistance genes. Antimicrob Agents Chemother. 1995; 39:185-191. PMID: 7695304
23. Carattoli A, Bertini A, Villa L, Falbo V, Hopkins KL, Threlfall EJ. Identification of plasmids by PCR-based replicon typing. J Microbiol Methods. 2005; 63:219-228. PMID: 15935499
24. Villa L, Garcia-Fernandez A, Fortini D, Carattoli A. Replicon sequence typing of IncF plasmids carrying virulence and resistance determinants. J Antimicrob Chemother. 2010; 65:2518-2529. doi: 10.1093/jac/dkq347 PMID: 20935300
25. Barton BM, Harding GP, Zuccarelli AJ. A general method for detecting and sizing large plasmids. Anal Biochem. 1995; 226:235-240. PMID: 7793624
26. Doumith M, Day MJ, Hope R, Wain J, Woodford N. Improved multiplex PCR strategy for rapid assignment of the four major Escherichia coli phylogenetic groups. J Clin Microbiol. 2012; 50:3108-3110. doi: 10.1128/JCM.01468-12 PMID: 22785193
27. Ribot EM, Fair MA, Gautom R, Cameron DN, Hunter SB, Swaminathan B, et al. Standardization of pulsed-field gel electrophoresis protocols for the subtyping of Escherichia coli O157:H7, Salmonella, and Shigella for PulseNet. Foodborne Pathog Dis. 2006; 3:59-67. PMID: 16602980
28. Li D, Liu B, Chen M, Guo D, Guo X, Liu F, et al. A multiplex PCR method to detect 14 Escherichia coli serogroups associated with urinary tract infections. J Microbiol Methods. 2010; 82:71-77. doi: 10.1016/j.mimet.2010.04.008 PMID: 20434495
29. Team RC. R: A language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing. 2012. Available from: http://www.R-project.org/. doi: 10.1002/jcc.22917 PMID: 22278855
30. Sunde M, Solheim H, Slettemeas JS. Genetic linkage between class 1 integrons with the dfrA12-orfF-aadA2 cassette array and sul3 in Escherichia coli. Vet Microbiol. 2008; 130:422-425. doi: 10.1016/j.vetmic.2008.02.001 PMID: 18367349
31. Adams-Sapper S, Diep BA, Perdreau-Remington F, Riley LW. Clonal composition and community clustering of drug-susceptible and-resistant Escherichia coli isolates from bloodstream infections. Antimicrob Agents Chemother. 2013; 57:490-497. doi: 10.1128/AAC.01025-12 PMID: 23147723
32. Machado E, Coque TM, Canton R, Sousa JC, Peixe L. Antibiotic resistance integrons and extended-spectrum β-lactamases among Enterobacteriaceae isolates recovered from chickens and swine in Portugal. J Antimicrob Chemother. 2008; 62:296-302. doi: 10.1093/jac/dkn179 PMID: 18456652
33. Marchant M, Vinue L, Torres C, Moreno MA. Change of integrons over time in Escherichia coli isolates recovered from healthy pigs and chickens. Vet Microbiol. 2013; 163:124-132. doi: 10.1016/j.vetmic.2012.12.011 PMID: 23290120
34. Lapierre L, Cornejo J, Borie C, Toro C, San Martin B. Genetic characterization of antibiotic resistance genes linked to class 1 and class 2 integrons in commensal strains of Escherichia coli isolated from poultry and swine. Microb Drug Resist. 2008; 14:265-272. doi: 10.1089/mdr.2008.0810 PMID: 19090720
35. Kadlec K, Schwarz S. Analysis and distribution of class 1 and class 2 integrons and associated gene cassettes among Escherichia coli isolates from swine, horses, cats and dogs collected in the BfT-GermVet monitoring study. J Antimicrob Chemother. 2008; 62:469-473. doi: 10.1093/jac/dkn233 PMID: 18550679
36. Vasilakopoulou A, Psichogiou M, Tzouvelekis L, Tassios PT, Kosmidis C, Petrikkos G, et al. Prevalence and characterization of class 1 integrons in Escherichia coli of poultry and human origin. Foodborne Pathog Dis. 2009; 6:1211-1218. doi: 10.1089/fpd.2009.0281 PMID: 19735202
37. de Been M, Lanza VF, de Toro M, Scharringa J, Dohmen W, Du Y, et al. Dissemination of Cephalosporin Resistance Genes between Escherichia coli Strains from Farm Animals and Humans by Specific Plasmid Lineages. PLoS Genet. 2014; 10:e1004776. doi: 10.1371/journal.pgen.1004776 PMID: 25522320
38. Peigne C, Bidet P, Mahjoub-Messai F, Plainvert C, Barbe V, Medigue C, et al. The plasmid of Escherichia coli strain S88 (O45:K1:H7) that causes neonatal meningitis is closely related to avian pathogenic E. coli plasmids and is associated with high-level bacteremia in a neonatal rat meningitis model. Infect Immun. 2009; 77:2272-2284. doi: 10.1128/IAI.01333-08 PMID: 19307211
39. Johnson JR, Johnston B, Clabots CR, Kuskowski MA, Roberts E, DebRoy C. Virulence genotypes and phylogenetic background of Escherichia coli serogroup O6 isolates from humans, dogs, and cats. J Clin Microbiol. 2008; 46:417-422. PMID: 18003805
40. Naseer U, Sundsfjord A. The CTX-M conundrum: dissemination of plasmids and Escherichia coli clones. Microb Drug Resist. 2011; 17:83-97. doi: 10.1089/mdr.2010.0132 PMID: 21281129
41. Rogers BA, Sidjabat HE, Paterson DL. Escherichia coli O25b-ST131: a pandemic, multiresistant, community-associated strain. J Antimicrob Chemother. 2011; 66:1-14. doi: 10.1093/jac/dkq415 PMID: 21081548
42. CTX-M-9 group genes and rmtB-qepA in Enterobacteriaceae isolates from pets in China. Antimicrob Agents Chemother. 2011; 55:4926-4929. doi: 10.1128/AAC.00133-11 PMID: 21788459