-
1
-
-
0019826665
-
Establishment in culture of pluripotential cells from mouse embryos
-
Evans MJ, Kaufman MH, (1981) Establishment in culture of pluripotential cells from mouse embryos. Nature 292: 154-156
-
(1981)
Nature
, vol.292
, pp. 154-156
-
-
Evans, M.J.1
Kaufman, M.H.2
-
2
-
-
53049092465
-
Dynamic equilibrium and heterogeneity of mouse pluripotent stem cells with distinct functional and epigenetic states
-
Hayashi K, Lopes SM, Tang F, Surani MA, (2008) Dynamic equilibrium and heterogeneity of mouse pluripotent stem cells with distinct functional and epigenetic states. Cell Stem Cell 3: 391-401
-
(2008)
Cell Stem Cell
, vol.3
, pp. 391-401
-
-
Hayashi, K.1
Lopes, S.M.2
Tang, F.3
Surani, M.A.4
-
3
-
-
42149192008
-
Identification and characterization of subpopulations in undifferentiated ES cell culture
-
Toyooka Y, Shimosato D, Murakami K, Takahashi K, Niwa H, (2008) Identification and characterization of subpopulations in undifferentiated ES cell culture. Development 135: 909-918
-
(2008)
Development
, vol.135
, pp. 909-918
-
-
Toyooka, Y.1
Shimosato, D.2
Murakami, K.3
Takahashi, K.4
Niwa, H.5
-
4
-
-
34447527158
-
Derivation of pluripotent epiblast stem cells from mammalian embryos
-
Brons IG, Smithers LE, Trotter MW, Rugg-Gunn P, Sun B, de Sousa C, Lopes SM, Howlett SK, Clarkson A, Ahrlund-Richter L, et al, (2007) Derivation of pluripotent epiblast stem cells from mammalian embryos. Nature 448: 191-195
-
(2007)
Nature
, vol.448
, pp. 191-195
-
-
Brons, I.G.1
Smithers, L.E.2
Trotter, M.W.3
Rugg-Gunn, P.4
Sun, B.5
De Sousa, C.6
Lopes, S.M.7
Howlett, S.K.8
Clarkson, A.9
Ahrlund-Richter, L.10
-
5
-
-
34447528757
-
New cell lines from mouse epiblast share defining features with human embryonic stem cells
-
Tesar PJ, Chenoweth JG, Brook FA, Davies TJ, Evans EP, Mack DL, Gardner RL, McKay RD, (2007) New cell lines from mouse epiblast share defining features with human embryonic stem cells. Nature 448: 196-199
-
(2007)
Nature
, vol.448
, pp. 196-199
-
-
Tesar, P.J.1
Chenoweth, J.G.2
Brook, F.A.3
Davies, T.J.4
Evans, E.P.5
MacK, D.L.6
Gardner, R.L.7
McKay, R.D.8
-
6
-
-
44349170450
-
The ground state of embryonic stem cell self-renewal
-
Ying QL, Wray J, Nichols J, Batlle-Morera L, Doble B, Woodgett J, Cohen P, Smith A, (2008) The ground state of embryonic stem cell self-renewal. Nature 453: 519-523
-
(2008)
Nature
, vol.453
, pp. 519-523
-
-
Ying, Q.L.1
Wray, J.2
Nichols, J.3
Batlle-Morera, L.4
Doble, B.5
Woodgett, J.6
Cohen, P.7
Smith, A.8
-
8
-
-
84884164554
-
FGF signaling inhibition in ESCs drives rapid genome-wide demethylation to the epigenetic ground state of pluripotency
-
Ficz G, Hore TA, Santos F, Lee HJ, Dean W, Arand J, Krueger F, Oxley D, Paul YL, Walter J, et al, (2013) FGF signaling inhibition in ESCs drives rapid genome-wide demethylation to the epigenetic ground state of pluripotency. Cell Stem Cell 13: 351-359
-
(2013)
Cell Stem Cell
, vol.13
, pp. 351-359
-
-
Ficz, G.1
Hore, T.A.2
Santos, F.3
Lee, H.J.4
Dean, W.5
Arand, J.6
Krueger, F.7
Oxley, D.8
Paul, Y.L.9
Walter, J.10
-
9
-
-
84875201183
-
Naive pluripotency is associated with global DNA hypomethylation
-
Leitch HG, McEwen KR, Turp A, Encheva V, Carroll T, Grabole N, Mansfield W, Nashun B, Knezovich JG, Smith A, et al, (2013) Naive pluripotency is associated with global DNA hypomethylation. Nat Struct Mol Biol 20: 311-316
-
(2013)
Nat Struct Mol Biol
, vol.20
, pp. 311-316
-
-
Leitch, H.G.1
McEwen, K.R.2
Turp, A.3
Encheva, V.4
Carroll, T.5
Grabole, N.6
Mansfield, W.7
Nashun, B.8
Knezovich, J.G.9
Smith, A.10
-
10
-
-
84875222965
-
PRDM14 ensures naive pluripotency through dual regulation of signaling and epigenetic pathways in mouse embryonic stem cells
-
Yamaji M, Ueda J, Hayashi K, Ohta H, Yabuta Y, Kurimoto K, Nakato R, Yamada Y, Shirahige K, Saitou M, (2013) PRDM14 ensures naive pluripotency through dual regulation of signaling and epigenetic pathways in mouse embryonic stem cells. Cell Stem Cell 12: 368-382
-
(2013)
Cell Stem Cell
, vol.12
, pp. 368-382
-
-
Yamaji, M.1
Ueda, J.2
Hayashi, K.3
Ohta, H.4
Yabuta, Y.5
Kurimoto, K.6
Nakato, R.7
Yamada, Y.8
Shirahige, K.9
Saitou, M.10
-
11
-
-
66149146320
-
Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1
-
Tahiliani M, Koh KP, Shen Y, Pastor WA, Bandukwala H, Brudno Y, Agarwal S, Iyer LM, Liu DR, Aravind L, et al, (2009) Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1. Science 324: 930-935
-
(2009)
Science
, vol.324
, pp. 930-935
-
-
Tahiliani, M.1
Koh, K.P.2
Shen, Y.3
Pastor, W.A.4
Bandukwala, H.5
Brudno, Y.6
Agarwal, S.7
Iyer, L.M.8
Liu, D.R.9
Aravind, L.10
-
12
-
-
84922638845
-
DAZL limits pluripotency, differentiation, and apoptosis in developing primordial germ cells
-
Chen HH, Welling M, Bloch DB, Munoz J, Mientjes E, Chen X, Tramp C, Wu J, Yabuuchi A, Chou YF, et al, (2014) DAZL limits pluripotency, differentiation, and apoptosis in developing primordial germ cells. Stem Cell Rep 3: 892-904
-
(2014)
Stem Cell Rep
, vol.3
, pp. 892-904
-
-
Chen, H.H.1
Welling, M.2
Bloch, D.B.3
Munoz, J.4
Mientjes, E.5
Chen, X.6
Tramp, C.7
Wu, J.8
Yabuuchi, A.9
Chou, Y.F.10
-
13
-
-
29044432866
-
Dazl deficiency leads to embryonic arrest of germ cell development in XY C57BL/6 mice
-
Lin Y, Page DC, (2005) Dazl deficiency leads to embryonic arrest of germ cell development in XY C57BL/6 mice. Dev Biol 288: 309-316
-
(2005)
Dev Biol
, vol.288
, pp. 309-316
-
-
Lin, Y.1
Page, D.C.2
-
14
-
-
37549002155
-
Nanog safeguards pluripotency and mediates germline development
-
Chambers I, Silva J, Colby D, Nichols J, Nijmeijer B, Robertson M, Vrana J, Jones K, Grotewold L, Smith A, (2007) Nanog safeguards pluripotency and mediates germline development. Nature 450: 1230-1234
-
(2007)
Nature
, vol.450
, pp. 1230-1234
-
-
Chambers, I.1
Silva, J.2
Colby, D.3
Nichols, J.4
Nijmeijer, B.5
Robertson, M.6
Vrana, J.7
Jones, K.8
Grotewold, L.9
Smith, A.10
-
15
-
-
84860351082
-
The transcriptional and epigenomic foundations of ground state pluripotency
-
Marks H, Kalkan T, Menafra R, Denissov S, Jones K, Hofemeister H, Nichols J, Kranz A, Stewart AF, Smith A, et al, (2012) The transcriptional and epigenomic foundations of ground state pluripotency. Cell 149: 590-604
-
(2012)
Cell
, vol.149
, pp. 590-604
-
-
Marks, H.1
Kalkan, T.2
Menafra, R.3
Denissov, S.4
Jones, K.5
Hofemeister, H.6
Nichols, J.7
Kranz, A.8
Stewart, A.F.9
Smith, A.10
-
16
-
-
84858800729
-
Control of ground-state pluripotency by allelic regulation of Nanog
-
Miyanari Y, Torres-Padilla ME, (2012) Control of ground-state pluripotency by allelic regulation of Nanog. Nature 483: 470-473
-
(2012)
Nature
, vol.483
, pp. 470-473
-
-
Miyanari, Y.1
Torres-Padilla, M.E.2
-
17
-
-
79959950773
-
Inhibition of glycogen synthase kinase-3 alleviates Tcf3 repression of the pluripotency network and increases embryonic stem cell resistance to differentiation
-
Wray J, Kalkan T, Gomez-Lopez S, Eckardt D, Cook A, Kemler R, Smith A, (2011) Inhibition of glycogen synthase kinase-3 alleviates Tcf3 repression of the pluripotency network and increases embryonic stem cell resistance to differentiation. Nat Cell Biol 13: 838-845
-
(2011)
Nat Cell Biol
, vol.13
, pp. 838-845
-
-
Wray, J.1
Kalkan, T.2
Gomez-Lopez, S.3
Eckardt, D.4
Cook, A.5
Kemler, R.6
Smith, A.7
-
18
-
-
33645227503
-
Generation of stella-GFP transgenic mice: A novel tool to study germ cell development
-
Payer B, Chuva de Sousa Lopes SM, Barton SC, Lee C, Saitou M, Surani MA, (2006) Generation of stella-GFP transgenic mice: a novel tool to study germ cell development. Genesis 44: 75-83
-
(2006)
Genesis
, vol.44
, pp. 75-83
-
-
Payer, B.1
Chuva De Sousa Lopes, S.M.2
Barton, S.C.3
Lee, C.4
Saitou, M.5
Surani, M.A.6
-
19
-
-
9944257453
-
Pluripotential competence of cells associated with Nanog activity
-
Hatano SY, Tada M, Kimura H, Yamaguchi S, Kono T, Nakano T, Suemori H, Nakatsuji N, Tada T, (2005) Pluripotential competence of cells associated with Nanog activity. Mech Dev 122: 67-79
-
(2005)
Mech Dev
, vol.122
, pp. 67-79
-
-
Hatano, S.Y.1
Tada, M.2
Kimura, H.3
Yamaguchi, S.4
Kono, T.5
Nakano, T.6
Suemori, H.7
Nakatsuji, N.8
Tada, T.9
-
20
-
-
66049136895
-
Klf4 reverts developmentally programmed restriction of ground state pluripotency
-
Guo G, Yang J, Nichols J, Hall JS, Eyres I, Mansfield W, Smith A, (2009) Klf4 reverts developmentally programmed restriction of ground state pluripotency. Development 136: 1063-1069
-
(2009)
Development
, vol.136
, pp. 1063-1069
-
-
Guo, G.1
Yang, J.2
Nichols, J.3
Hall, J.S.4
Eyres, I.5
Mansfield, W.6
Smith, A.7
-
21
-
-
0037130207
-
A molecular programme for the specification of germ cell fate in mice
-
Saitou M, Barton SC, Surani MA, (2002) A molecular programme for the specification of germ cell fate in mice. Nature 418: 293-300
-
(2002)
Nature
, vol.418
, pp. 293-300
-
-
Saitou, M.1
Barton, S.C.2
Surani, M.A.3
-
22
-
-
84855171722
-
Expression2Kinases: MRNA profiling linked to multiple upstream regulatory layers
-
Chen EY, Xu H, Gordonov S, Lim MP, Perkins MH, Ma'ayan A, (2013) Expression2Kinases: mRNA profiling linked to multiple upstream regulatory layers. Bioinformatics 28: 105-111
-
(2013)
Bioinformatics
, vol.28
, pp. 105-111
-
-
Chen, E.Y.1
Xu, H.2
Gordonov, S.3
Lim, M.P.4
Perkins, M.H.5
Ma'Ayan, A.6
-
23
-
-
13944262909
-
A germ cell origin of embryonic stem cells?
-
Zwaka TP, Thomson JA, (2005) A germ cell origin of embryonic stem cells? Development 132: 227-233
-
(2005)
Development
, vol.132
, pp. 227-233
-
-
Zwaka, T.P.1
Thomson, J.A.2
-
24
-
-
45449093213
-
Ronin is essential for embryogenesis and the pluripotency of mouse embryonic stem cells
-
Dejosez M, Krumenacker JS, Zitur LJ, Passeri M, Chu LF, Songyang Z, Thomson JA, Zwaka TP, (2008) Ronin is essential for embryogenesis and the pluripotency of mouse embryonic stem cells. Cell 133: 1162-1174
-
(2008)
Cell
, vol.133
, pp. 1162-1174
-
-
Dejosez, M.1
Krumenacker, J.S.2
Zitur, L.J.3
Passeri, M.4
Chu, L.F.5
Songyang, Z.6
Thomson, J.A.7
Zwaka, T.P.8
-
25
-
-
70349934958
-
Suppression of Erk signalling promotes ground state pluripotency in the mouse embryo
-
Nichols J, Silva J, Roode M, Smith A, (2009) Suppression of Erk signalling promotes ground state pluripotency in the mouse embryo. Development 136: 3215-3222
-
(2009)
Development
, vol.136
, pp. 3215-3222
-
-
Nichols, J.1
Silva, J.2
Roode, M.3
Smith, A.4
-
26
-
-
27344435774
-
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
-
Subramanian A, Tamayo P, Mootha VK, Mukherjee S, Ebert BL, Gillette MA, Paulovich A, Pomeroy SL, Golub TR, Lander ES, et al, (2005) Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci U S A 102: 15545-15550
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 15545-15550
-
-
Subramanian, A.1
Tamayo, P.2
Mootha, V.K.3
Mukherjee, S.4
Ebert, B.L.5
Gillette, M.A.6
Paulovich, A.7
Pomeroy, S.L.8
Golub, T.R.9
Lander, E.S.10
-
27
-
-
84885187275
-
Identification of the missing pluripotency mediator downstream of leukaemia inhibitory factor
-
Martello G, Bertone P, Smith A, (2013) Identification of the missing pluripotency mediator downstream of leukaemia inhibitory factor. EMBO J 32: 2561-2574
-
(2013)
EMBO J
, vol.32
, pp. 2561-2574
-
-
Martello, G.1
Bertone, P.2
Smith, A.3
-
28
-
-
84885184220
-
Embryonic stem cell self-renewal pathways converge on the transcription factor Tfcp2l1
-
Ye S, Li P, Tong C, Ying QL, (2013) Embryonic stem cell self-renewal pathways converge on the transcription factor Tfcp2l1. EMBO J 32: 2548-2560
-
(2013)
EMBO J
, vol.32
, pp. 2548-2560
-
-
Ye, S.1
Li, P.2
Tong, C.3
Ying, Q.L.4
-
29
-
-
84884136941
-
DNA demethylation in pluripotency and reprogramming: The role of tet proteins and cell division
-
Bagci H, Fisher AG, (2013) DNA demethylation in pluripotency and reprogramming: the role of tet proteins and cell division. Cell Stem Cell 13: 265-269
-
(2013)
Cell Stem Cell
, vol.13
, pp. 265-269
-
-
Bagci, H.1
Fisher, A.G.2
-
30
-
-
84892763878
-
Reversing DNA methylation: Mechanisms, genomics, and biological functions
-
Wu H, Zhang Y, (2014) Reversing DNA methylation: mechanisms, genomics, and biological functions. Cell 156: 45-68
-
(2014)
Cell
, vol.156
, pp. 45-68
-
-
Wu, H.1
Zhang, Y.2
-
31
-
-
84860221291
-
Recognition and potential mechanisms for replication and erasure of cytosine hydroxymethylation
-
Hashimoto H, Liu Y, Upadhyay AK, Chang Y, Howerton SB, Vertino PM, Zhang X, Cheng X, (2012) Recognition and potential mechanisms for replication and erasure of cytosine hydroxymethylation. Nucleic Acids Res 40: 4841-4849
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 4841-4849
-
-
Hashimoto, H.1
Liu, Y.2
Upadhyay, A.K.3
Chang, Y.4
Howerton, S.B.5
Vertino, P.M.6
Zhang, X.7
Cheng, X.8
-
32
-
-
82655187105
-
Generation and replication-dependent dilution of 5fC and 5caC during mouse preimplantation development
-
Inoue A, Shen L, Dai Q, He C, Zhang Y, (2011) Generation and replication-dependent dilution of 5fC and 5caC during mouse preimplantation development. Cell Res 21: 1670-1676
-
(2011)
Cell Res
, vol.21
, pp. 1670-1676
-
-
Inoue, A.1
Shen, L.2
Dai, Q.3
He, C.4
Zhang, Y.5
-
33
-
-
80052461558
-
Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine
-
Ito S, Shen L, Dai Q, Wu SC, Collins LB, Swenberg JA, He C, Zhang Y, (2011) Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine. Science 333: 1300-1303
-
(2011)
Science
, vol.333
, pp. 1300-1303
-
-
Ito, S.1
Shen, L.2
Dai, Q.3
Wu, S.C.4
Collins, L.B.5
Swenberg, J.A.6
He, C.7
Zhang, Y.8
-
34
-
-
84871702441
-
The dynamics of genome-wide DNA methylation reprogramming in mouse primordial germ cells
-
Seisenberger S, Andrews S, Krueger F, Arand J, Walter J, Santos F, Popp C, Thienpont B, Dean W, Reik W, (2012) The dynamics of genome-wide DNA methylation reprogramming in mouse primordial germ cells. Mol Cell 48: 849-862
-
(2012)
Mol Cell
, vol.48
, pp. 849-862
-
-
Seisenberger, S.1
Andrews, S.2
Krueger, F.3
Arand, J.4
Walter, J.5
Santos, F.6
Popp, C.7
Thienpont, B.8
Dean, W.9
Reik, W.10
-
35
-
-
84859910536
-
A unique regulatory phase of DNA methylation in the early mammalian embryo
-
Smith ZD, Chan MM, Mikkelsen TS, Gu H, Gnirke A, Regev A, Meissner A, (2012) A unique regulatory phase of DNA methylation in the early mammalian embryo. Nature 484: 339-344
-
(2012)
Nature
, vol.484
, pp. 339-344
-
-
Smith, Z.D.1
Chan, M.M.2
Mikkelsen, T.S.3
Gu, H.4
Gnirke, A.5
Regev, A.6
Meissner, A.7
-
36
-
-
84884133672
-
Whole-genome bisulfite sequencing of two distinct interconvertible DNA methylomes of mouse embryonic stem cells
-
Habibi E, Brinkman AB, Arand J, Kroeze LI, Kerstens HH, Matarese F, Lepikhov K, Gut M, Brun-Heath I, Hubner NC, et al, (2013) Whole-genome bisulfite sequencing of two distinct interconvertible DNA methylomes of mouse embryonic stem cells. Cell Stem Cell 13: 360-369
-
(2013)
Cell Stem Cell
, vol.13
, pp. 360-369
-
-
Habibi, E.1
Brinkman, A.B.2
Arand, J.3
Kroeze, L.I.4
Kerstens, H.H.5
Matarese, F.6
Lepikhov, K.7
Gut, M.8
Brun-Heath, I.9
Hubner, N.C.10
-
37
-
-
84872770694
-
Germline DNA demethylation dynamics and imprint erasure through 5-hydroxymethylcytosine
-
Hackett JA, Sengupta R, Zylicz JJ, Murakami K, Lee C, Down TA, Surani MA, (2013) Germline DNA demethylation dynamics and imprint erasure through 5-hydroxymethylcytosine. Science 339: 448-452
-
(2013)
Science
, vol.339
, pp. 448-452
-
-
Hackett, J.A.1
Sengupta, R.2
Zylicz, J.J.3
Murakami, K.4
Lee, C.5
Down, T.A.6
Surani, M.A.7
-
38
-
-
84898482006
-
Loss of tet enzymes compromises proper differentiation of embryonic stem cells
-
Dawlaty MM, Breiling A, Le T, Barrasa MI, Raddatz G, Gao Q, Powell BE, Cheng AW, Faull KF, Lyko F, et al, (2014) Loss of tet enzymes compromises proper differentiation of embryonic stem cells. Dev Cell 29: 102-111
-
(2014)
Dev Cell
, vol.29
, pp. 102-111
-
-
Dawlaty, M.M.1
Breiling, A.2
Le, T.3
Barrasa, M.I.4
Raddatz, G.5
Gao, Q.6
Powell, B.E.7
Cheng, A.W.8
Faull, K.F.9
Lyko, F.10
-
39
-
-
84901831004
-
Validation of noise models for single-cell transcriptomics
-
Grun D, Kester L, van Oudenaarden A, (2014) Validation of noise models for single-cell transcriptomics. Nat Methods 11: 637-640
-
(2014)
Nat Methods
, vol.11
, pp. 637-640
-
-
Grun, D.1
Kester, L.2
Van Oudenaarden, A.3
-
40
-
-
84881476916
-
Vitamin C induces Tet-dependent DNA demethylation and a blastocyst-like state in ES cells
-
Blaschke K, Ebata KT, Karimi MM, Zepeda-Martinez JA, Goyal P, Mahapatra S, Tam A, Laird DJ, Hirst M, Rao A, et al, (2013) Vitamin C induces Tet-dependent DNA demethylation and a blastocyst-like state in ES cells. Nature 500: 222-226
-
(2013)
Nature
, vol.500
, pp. 222-226
-
-
Blaschke, K.1
Ebata, K.T.2
Karimi, M.M.3
Zepeda-Martinez, J.A.4
Goyal, P.5
Mahapatra, S.6
Tam, A.7
Laird, D.J.8
Hirst, M.9
Rao, A.10
-
41
-
-
34250890897
-
Translation of the synaptonemal complex component Sycp3 is enhanced in vivo by the germ cell specific regulator Dazl
-
Reynolds N, Collier B, Bingham V, Gray NK, Cooke HJ, (2007) Translation of the synaptonemal complex component Sycp3 is enhanced in vivo by the germ cell specific regulator Dazl. RNA 13: 974-981
-
(2007)
RNA
, vol.13
, pp. 974-981
-
-
Reynolds, N.1
Collier, B.2
Bingham, V.3
Gray, N.K.4
Cooke, H.J.5
-
42
-
-
29644441032
-
Dazl binds in vivo to specific transcripts and can regulate the pre-meiotic translation of Mvh in germ cells
-
Reynolds N, Collier B, Maratou K, Bingham V, Speed RM, Taggart M, Semple CA, Gray NK, Cooke HJ, (2005) Dazl binds in vivo to specific transcripts and can regulate the pre-meiotic translation of Mvh in germ cells. Hum Mol Genet 14: 3899-3909
-
(2005)
Hum Mol Genet
, vol.14
, pp. 3899-3909
-
-
Reynolds, N.1
Collier, B.2
Maratou, K.3
Bingham, V.4
Speed, R.M.5
Taggart, M.6
Semple, C.A.7
Gray, N.K.8
Cooke, H.J.9
-
43
-
-
0030885623
-
The mouse Dazla gene encodes a cytoplasmic protein essential for gametogenesis
-
Ruggiu M, Speed R, Taggart M, McKay SJ, Kilanowski F, Saunders P, Dorin J, Cooke HJ, (1997) The mouse Dazla gene encodes a cytoplasmic protein essential for gametogenesis. Nature 389: 73-77
-
(1997)
Nature
, vol.389
, pp. 73-77
-
-
Ruggiu, M.1
Speed, R.2
Taggart, M.3
McKay, S.J.4
Kilanowski, F.5
Saunders, P.6
Dorin, J.7
Cooke, H.J.8
-
44
-
-
84890963403
-
Synergistic mechanisms of DNA demethylation during transition to ground-state pluripotency
-
Hackett JA, Dietmann S, Murakami K, Down TA, Leitch HG, Surani MA, (2013) Synergistic mechanisms of DNA demethylation during transition to ground-state pluripotency. Stem Cell Rep 1: 518-531
-
(2013)
Stem Cell Rep
, vol.1
, pp. 518-531
-
-
Hackett, J.A.1
Dietmann, S.2
Murakami, K.3
Down, T.A.4
Leitch, H.G.5
Surani, M.A.6
-
45
-
-
82355191546
-
Embryonic stem cell-based mapping of developmental transcriptional programs
-
Mazzoni EO, Mahony S, Iacovino M, Morrison CA, Mountoufaris G, Closser M, Whyte WA, Young RA, Kyba M, Gifford DK, et al, (2011) Embryonic stem cell-based mapping of developmental transcriptional programs. Nat Methods 8: 1056-1058
-
(2011)
Nat Methods
, vol.8
, pp. 1056-1058
-
-
Mazzoni, E.O.1
Mahony, S.2
Iacovino, M.3
Morrison, C.A.4
Mountoufaris, G.5
Closser, M.6
Whyte, W.A.7
Young, R.A.8
Kyba, M.9
Gifford, D.K.10
-
46
-
-
84894257068
-
Structure of a Naegleria Tet-like dioxygenase in complex with 5-methylcytosine DNA
-
Hashimoto H, Pais JE, Zhang X, Saleh L, Fu ZQ, Dai N, Correa IR Jr, Zheng Y, Cheng X, (2014) Structure of a Naegleria Tet-like dioxygenase in complex with 5-methylcytosine DNA. Nature 506: 391-395
-
(2014)
Nature
, vol.506
, pp. 391-395
-
-
Hashimoto, H.1
Pais, J.E.2
Zhang, X.3
Saleh, L.4
Fu, Z.Q.5
Dai, N.6
Correa, Jr.I.R.7
Zheng, Y.8
Cheng, X.9
-
47
-
-
84922393701
-
Absolute and relative quantification of RNA modifications via biosynthetic isotopomers
-
Kellner S, Ochel A, Thuring K, Spenkuch F, Neumann J, Sharma S, Entian KD, Schneider D, Helm M, (2014) Absolute and relative quantification of RNA modifications via biosynthetic isotopomers. Nucleic Acids Res 42: e142
-
(2014)
Nucleic Acids Res
, vol.42
, pp. e142
-
-
Kellner, S.1
Ochel, A.2
Thuring, K.3
Spenkuch, F.4
Neumann, J.5
Sharma, S.6
Entian, K.D.7
Schneider, D.8
Helm, M.9
-
48
-
-
84880554318
-
Quantitative assessment of Tet-induced oxidation products of 5-methylcytosine in cellular and tissue DNA
-
Liu S, Wang J, Su Y, Guerrero C, Zeng Y, Mitra D, Brooks PJ, Fisher DE, Song H, Wang Y, (2013) Quantitative assessment of Tet-induced oxidation products of 5-methylcytosine in cellular and tissue DNA. Nucleic Acids Res 41: 6421-6429
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 6421-6429
-
-
Liu, S.1
Wang, J.2
Su, Y.3
Guerrero, C.4
Zeng, Y.5
Mitra, D.6
Brooks, P.J.7
Fisher, D.E.8
Song, H.9
Wang, Y.10
-
49
-
-
84902831568
-
Tet oxidizes thymine to 5-hydroxymethyluracil in mouse embryonic stem cell DNA
-
Pfaffeneder T, Spada F, Wagner M, Brandmayr C, Laube SK, Eisen D, Truss M, Steinbacher J, Hackner B, Kotljarova O, et al, (2014) Tet oxidizes thymine to 5-hydroxymethyluracil in mouse embryonic stem cell DNA. Nat Chem Biol 10: 574-581
-
(2014)
Nat Chem Biol
, vol.10
, pp. 574-581
-
-
Pfaffeneder, T.1
Spada, F.2
Wagner, M.3
Brandmayr, C.4
Laube, S.K.5
Eisen, D.6
Truss, M.7
Steinbacher, J.8
Hackner, B.9
Kotljarova, O.10
-
50
-
-
84894357949
-
A validated quantitative liquid chromatography-tandem quadrupole mass spectrometry method for monitoring isotopologues to evaluate global modified cytosine ratios in genomic DNA
-
Tsuji M, Matsunaga H, Jinno D, Tsukamoto H, Suzuki N, Tomioka Y, (2014) A validated quantitative liquid chromatography-tandem quadrupole mass spectrometry method for monitoring isotopologues to evaluate global modified cytosine ratios in genomic DNA. J Chromatogr B Analyt Technol Biomed Life Sci 953-954: 38-47
-
(2014)
J Chromatogr B Analyt Technol Biomed Life Sci
, vol.953-954
, pp. 38-47
-
-
Tsuji, M.1
Matsunaga, H.2
Jinno, D.3
Tsukamoto, H.4
Suzuki, N.5
Tomioka, Y.6
-
51
-
-
53349161901
-
Imaging individual mRNA molecules using multiple singly labeled probes
-
Raj A, van den Bogaard P, Rifkin SA, van Oudenaarden A, Tyagi S, (2008) Imaging individual mRNA molecules using multiple singly labeled probes. Nat Methods 5: 877-879
-
(2008)
Nat Methods
, vol.5
, pp. 877-879
-
-
Raj, A.1
Van Den Bogaard, P.2
Rifkin, S.A.3
Van Oudenaarden, A.4
Tyagi, S.5
-
52
-
-
77749323185
-
RNA-Seq analysis to capture the transcriptome landscape of a single cell
-
Tang F, Barbacioru C, Nordman E, Li B, Xu N, Bashkirov VI, Lao K, Surani MA, (2010) RNA-Seq analysis to capture the transcriptome landscape of a single cell. Nat Protoc 5: 516-535
-
(2010)
Nat Protoc
, vol.5
, pp. 516-535
-
-
Tang, F.1
Barbacioru, C.2
Nordman, E.3
Li, B.4
Xu, N.5
Bashkirov, V.I.6
Lao, K.7
Surani, M.A.8
-
53
-
-
84903574951
-
Bayesian approach to single-cell differential expression analysis
-
Kharchenko PV, Silberstein L, Scadden DT, (2014) Bayesian approach to single-cell differential expression analysis. Nat Methods 11: 740-742
-
(2014)
Nat Methods
, vol.11
, pp. 740-742
-
-
Kharchenko, P.V.1
Silberstein, L.2
Scadden, D.T.3
|