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Volumn 15, Issue 18, 2015, Pages 1837-1844

Use of Quasi-SMILES and monte carlo optimization to develop quantitative feature property/activity relationships (QFPR/QFAR) for nanomaterials

Author keywords

Monte Carlo method; Nanomaterial; QFPR QFAR; QSPR QSAR; Quasi SMILES

Indexed keywords

FULLERENE; GRAPHENE; METAL OXIDE NANOPARTICLE; NANOMATERIAL; NANOPARTICLE; SILICA NANOPARTICLE; UNCLASSIFIED DRUG;

EID: 84934783593     PISSN: 15680266     EISSN: 18734294     Source Type: Journal    
DOI: 10.2174/1568026615666150506152000     Document Type: Article
Times cited : (19)

References (50)
  • 1
    • 0026073222 scopus 로고
    • Novel graph theoretical approach to heteroatoms in quantitative structure-activity relationships
    • Randić, M. Novel graph theoretical approach to heteroatoms in quantitative structure-activity relationships. Chemom. Intell. Lab. Syst., 1991, 10, 213-227.
    • (1991) Chemom. Intell. Lab. Syst. , vol.10 , pp. 213-227
    • Randić, M.1
  • 2
    • 84874761183 scopus 로고    scopus 로고
    • Enalos KNIME nodes: Exploring cor- rosion inhibition of steel in acidic medium
    • Melagraki, G.; Afantitis, A. Enalos KNIME nodes: Exploring cor- rosion inhibition of steel in acidic medium. Chemom. Intell. Lab. Syst., 2013, 123, 9–14.
    • (2013) Chemom. Intell. Lab. Syst. , vol.123 , pp. 9-14
    • Melagraki, G.1    Afantitis, A.2
  • 3
    • 77957941198 scopus 로고    scopus 로고
    • Current pharmaceutical design of antituberculosis drugs: Future perspectives
    • Speck-Planche, A.; Scotti, M.T.; de Paulo-Emerenciano, V. Current pharmaceutical design of antituberculosis drugs: Future perspectives. Curr. Pharm. Des., 2010, 16, 2656-2665.
    • (2010) Curr. Pharm. Des. , vol.16 , pp. 2656-2665
    • Speck-Planche, A.1    Scotti, M.T.2    De Paulo-Emerenciano, V.3
  • 4
    • 44449147785 scopus 로고    scopus 로고
    • QSAR modeling of acute toxicity by balance of correlations
    • Toropov, A.A.; Rasulev, B.F.; Leszczynski, J. QSAR modeling of acute toxicity by balance of correlations. Bioorg. Med. Chem., 2008, 16, 5999-6008.
    • (2008) Bioorg. Med. Chem. , vol.16 , pp. 5999-6008
    • Toropov, A.A.1    Rasulev, B.F.2    Leszczynski, J.3
  • 5
    • 41249089633 scopus 로고    scopus 로고
    • Modeling of octanol/water partition coefficient for vitamins by optimal descriptors calculated with SMILES
    • Toropov, A.A.; Toropova, A.P.; Raska Jr., I. QSPR modeling of octanol/water partition coefficient for vitamins by optimal descriptors calculated with SMILES. Eur. J. Med. Chem., 2008, 43, 714-740.
    • (2008) Eur. J. Med. Chem. , vol.43 , pp. 714-740
    • Toropov, A.A.1    Toropova, A.P.2    Raska, I.3
  • 6
    • 33751218895 scopus 로고    scopus 로고
    • Modeling of the half-wave potentials of benzoxazines by optimal descriptors calculated with the SMILES
    • Toropov, A.A.; Nesmerak, K.; Raska Jr., I.; Waisser, K.; Palat, K. QSPR modeling of the half-wave potentials of benzoxazines by optimal descriptors calculated with the SMILES. Comput. Biol. Chem., 2006, 30, 434-437.
    • (2006) Comput. Biol. Chem. , vol.30 , pp. 434-437
    • Toropov, A.A.1    Nesmerak, K.2    Raska, I.3    Waisser, K.4    Palat, K.5
  • 7
    • 77649178981 scopus 로고    scopus 로고
    • InChI-based optimal descriptors: QSAR analysis of fullerene[C60]-based HIV-1 PR inhibitors by correlation balance
    • Toropov, A.A.; Toropova, A.P.; Benfenati, E.; Leszczynska, D.; Leszczynski, J. InChI-based optimal descriptors: QSAR analysis of fullerene[C60]-based HIV-1 PR inhibitors by correlation balance. Eur. J. Med. Chem., 2010, 45, 1387-1394.
    • (2010) Eur. J. Med. Chem. , vol.45 , pp. 1387-1394
    • Toropov, A.A.1    Toropova, A.P.2    Benfenati, E.3    Leszczynska, D.4    Leszczynski, J.5
  • 8
    • 70350155717 scopus 로고    scopus 로고
    • Additive InChI-based optimal descriptors: QSPR modeling of fullerene C 60 solubility in organic solvents
    • Toropov, A.A.; Toropova, A.P.; Benfenati, E.; Leszczynska, D.; Leszczynski, J. Additive InChI-based optimal descriptors: QSPR modeling of fullerene C 60 solubility in organic solvents. J. Math. Chem., 2009, 46, 1232-1251.
    • (2009) J. Math. Chem. , vol.46 , pp. 1232-1251
    • Toropov, A.A.1    Toropova, A.P.2    Benfenati, E.3    Leszczynska, D.4    Leszczynski, J.5
  • 9
    • 77149132511 scopus 로고    scopus 로고
    • QSAR-modeling of toxicity of organometallic compounds by means of the balance of correlations for InChI-based optimal descriptors
    • Toropov, A.A.; Toropova, A.P.; Benfenati, E. QSAR-modeling of toxicity of organometallic compounds by means of the balance of correlations for InChI-based optimal descriptors. Mol. Diversity, 2010, 14, 183-192.
    • (2010) Mol. Diversity , vol.14 , pp. 183-192
    • Toropov, A.A.1    Toropova, A.P.2    Benfenati, E.3
  • 11
    • 22944475822 scopus 로고    scopus 로고
    • Using an Ensemble of Neural Based QSARs for the Prediction of Toxicological Properties of Chemical Contaminants
    • Rallo, R.; Espinosa, G.; Giralt, G. Using an Ensemble of Neural Based QSARs for the Prediction of Toxicological Properties of Chemical Contaminants. Process Saf. Environ. Prot., 2005, 83, 387-392.
    • (2005) Process Saf. Environ. Prot , vol.83 , pp. 387-392
    • Rallo, R.1    Espinosa, G.2    Giralt, G.3
  • 12
    • 84887307233 scopus 로고    scopus 로고
    • CORAL software: Prediction of carcinogenicity of drugs by means of the Monte Carlo method
    • Toropova, A.P.; Toropov, A.A. CORAL software: Prediction of carcinogenicity of drugs by means of the Monte Carlo method. Eur. J. Pharm. Sci, 2014, 52, 21-25.
    • (2014) Eur. J. Pharm. Sci , vol.52 , pp. 21-25
    • Toropova, A.P.1    Toropov, A.A.2
  • 13
    • 79951960171 scopus 로고    scopus 로고
    • Co-evolutions of correlations for QSAR of toxicity of organometallic and inorganic substances: An unexpected good prediction based on a model that seems untrustworthy
    • Toropova, A.P.; Toropov, A.A.; Benfenati, E.; Gini, G. Co-evolutions of correlations for QSAR of toxicity of organometallic and inorganic substances: An unexpected good prediction based on a model that seems untrustworthy. Chemom. Intell. Lab. Syst., 2011, 105, 215-219.
    • (2011) Chemom. Intell. Lab. Syst. , vol.105 , pp. 215-219
    • Toropova, A.P.1    Toropov, A.A.2    Benfenati, E.3    Gini, G.4
  • 14
    • 0345580974 scopus 로고    scopus 로고
    • Optimization of correlation weights of the local graph invariants: Use of the enthalpies of formation of complex compounds for the QSPR modeling
    • Toropov, A.A.; Toropova, A.P. Optimization of correlation weights of the local graph invariants: Use of the enthalpies of formation of complex compounds for the QSPR modeling. Russ. J. Coord. Chem., 1998, 24, 81-85.
    • (1998) Russ. J. Coord. Chem. , vol.24 , pp. 81-85
    • Toropov, A.A.1    Toropova, A.P.2
  • 15
    • 0344286837 scopus 로고    scopus 로고
    • Method of ideal symmetry in four-dimensional space: Implementation in the QSPR studies on the thermochemistry of complex compounds
    • Toropov, A.A.; Toropova, A.P. Method of ideal symmetry in four-dimensional space: Implementation in the QSPR studies on the thermochemistry of complex compounds. Russ. J. Coord. Chem., 1997, 23, 741-747.
    • (1997) Russ. J. Coord. Chem. , vol.23 , pp. 741-747
    • Toropov, A.A.1    Toropova, A.P.2
  • 19
    • 84872029419 scopus 로고    scopus 로고
    • QSAR modeling of endpoints for peptides which is based on representation of the molecular structure by a sequence of amino acids
    • Toropov, A.A.; Toropova, A.P.; Raska Jr., I.; Benfenati, E.; Gini, G. QSAR modeling of endpoints for peptides which is based on representation of the molecular structure by a sequence of amino acids. Struct. Chem., 2012, 23, 1891-1904.
    • (2012) Struct. Chem. , vol.23 , pp. 1891-1904
    • Toropov, A.A.1    Toropova, A.P.2    Raska, I.3    Benfenati, E.4    Gini, G.5
  • 20
    • 84896359897 scopus 로고    scopus 로고
    • Nano-QSAR modeling for predicting biological activity of diverse nanomaterials
    • Singh, K.P.; Gupta, S. Nano-QSAR modeling for predicting biological activity of diverse nanomaterials. RSC Adv., 2014, 4, 13215-13230.
    • (2014) RSC Adv. , vol.4 , pp. 13215-13230
    • Singh, K.P.1    Gupta, S.2
  • 21
    • 84899647322 scopus 로고    scopus 로고
    • Nanoinformatics: Emerging databases and available tools
    • Panneerselvam, S.; Choi, S. Nanoinformatics: Emerging databases and available tools. Int. J. Mol. Sci., 2014, 15, 7158-7182.
    • (2014) Int. J. Mol. Sci. , vol.15 , pp. 7158-7182
    • Panneerselvam, S.1    Choi, S.2
  • 22
    • 77956425677 scopus 로고    scopus 로고
    • Bionanoscience: Nano meets bio at the interface
    • Leszczynski, J. Bionanoscience: Nano meets bio at the interface. Nat. Nanotechnol., 2010, 5, 633-634.
    • (2010) Nat. Nanotechnol. , vol.5 , pp. 633-634
    • Leszczynski, J.1
  • 23
    • 34249681192 scopus 로고    scopus 로고
    • Study on solubility of fullerene C60 in organic solvents using optimal descriptors calculated with SMILES
    • Toropov, A.A.; Leszczynska, D.; Leszczynski, J. QSPR study on solubility of fullerene C60 in organic solvents using optimal descriptors calculated with SMILES. Chem. Phys. Lett., 2007, 441, 119-122.
    • (2007) Chem. Phys. Lett. , vol.441 , pp. 119-122
    • Toropov, A.A.1    Leszczynska, D.2    Leszczynski, J.3
  • 24
    • 43549096626 scopus 로고    scopus 로고
    • Multiplicative SMILES-based optimal descriptors: QSPR modeling of fullerene C60 solubility in organic solvents
    • Toropov, A.A.; Rasulev, B.F.; Leszczynska, D.; Leszczynski, J. Multiplicative SMILES-based optimal descriptors: QSPR modeling of fullerene C60 solubility in organic solvents. Chem. Phys. Lett., 2008, 457, 332-336.
    • (2008) Chem. Phys. Lett. , vol.457 , pp. 332-336
    • Toropov, A.A.1    Rasulev, B.F.2    Leszczynska, D.3    Leszczynski, J.4
  • 25
    • 34547609322 scopus 로고    scopus 로고
    • Additive SMILES based optimal descriptors: QSPR modeling of fullerene C60 solubility in organic solvents
    • Toropov, A.A.; Rasulev, B.F.; Leszczynska, D.; Leszczynski, J. Additive SMILES based optimal descriptors: QSPR modeling of fullerene C60 solubility in organic solvents. Chem. Phys. Lett., 2007, 444, 209-214.
    • (2007) Chem. Phys. Lett. , vol.444 , pp. 209-214
    • Toropov, A.A.1    Rasulev, B.F.2    Leszczynska, D.3    Leszczynski, J.4
  • 26
    • 77957370134 scopus 로고    scopus 로고
    • QSAR modeling of measured binding affinity for fullerene-based HIV-1 PR inhibitors by CORAL
    • Toropova, A.P.; Toropov, A.A.; Benfenati, E.; Leszczynska, D.; Leszczynski, J. QSAR modeling of measured binding affinity for fullerene-based HIV-1 PR inhibitors by CORAL. J. Math. Chem., 2010, 48, 959-987.
    • (2010) J. Math. Chem. , vol.48 , pp. 959-987
    • Toropova, A.P.1    Toropov, A.A.2    Benfenati, E.3    Leszczynska, D.4    Leszczynski, J.5
  • 27
    • 77649178981 scopus 로고    scopus 로고
    • InChI-based optimal descriptors: QSAR analysis of fullerene[C60]-based HIV-1 PR inhibitors by correlation balance
    • Toropov, A.A.; Toropova, A.P.; Benfenati, E.; Leszczynska, D.; Leszczynski, J. InChI-based optimal descriptors: QSAR analysis of fullerene[C60]-based HIV-1 PR inhibitors by correlation balance. Eur. J. Med. Chem., 2010, 45, 1387-1394.
    • (2010) Eur. J. Med. Chem. , vol.45 , pp. 1387-1394
    • Toropov, A.A.1    Toropova, A.P.2    Benfenati, E.3    Leszczynska, D.4    Leszczynski, J.5
  • 28
    • 80051588636 scopus 로고    scopus 로고
    • Improved model for fullerene C60 solubility in organic solvents based on quantum-chemical and topological descriptors
    • Petrova, T.; Rasulev, B.F.; Toropov, A.A.; Leszczynska, D.; Lesz-czynski, J. Improved model for fullerene C60 solubility in organic solvents based on quantum-chemical and topological descriptors. J. Nanopart. Res., 2011, 13, 3235-3247.
    • (2011) J. Nanopart. Res. , vol.13 , pp. 3235-3247
    • Petrova, T.1    Rasulev, B.F.2    Toropov, A.A.3    Leszczynska, D.4    Lesz-Czynski, J.5
  • 29
    • 70350155717 scopus 로고    scopus 로고
    • Additive InChI-based optimal descriptors: QSPR modeling of fullerene C 60 solubility in organic solvents
    • Toropov, A.A.; Toropova, A.P.; Benfenati, E.; Leszczynska, D.; Leszczynski, J. Additive InChI-based optimal descriptors: QSPR modeling of fullerene C 60 solubility in organic solvents. J. Math. Chem., 2009, 46, 1232-1251.
    • (2009) J. Math. Chem. , vol.46 , pp. 1232-1251
    • Toropov, A.A.1    Toropova, A.P.2    Benfenati, E.3    Leszczynska, D.4    Leszczynski, J.5
  • 30
    • 84865704741 scopus 로고    scopus 로고
    • Novel application of the CORAL software to model cytotoxicity of metal oxide nanoparticles to bacteria Escherichia coli
    • Toropov, A.A.; Toropova, A.P.; Benfenati, E.; Gini, G.; Puzyn, T.; Leszczynska, D.; Leszczynski, J. Novel application of the CORAL software to model cytotoxicity of metal oxide nanoparticles to bacteria Escherichia coli. Chemosphere, 2012, 89, 1098-1102.
    • (2012) Chemosphere , vol.89 , pp. 1098-1102
    • Toropov, A.A.1    Toropova, A.P.2    Benfenati, E.3    Gini, G.4    Puzyn, T.5    Leszczynska, D.6    Leszczynski, J.7
  • 31
    • 34047114442 scopus 로고    scopus 로고
    • Predicting water solubility and octanol water partition coefficient for carbon nano-tubes based on the chiral vector
    • Toropov, A.A.; Leszczynska, D.; Leszczynski, J. Predicting water solubility and octanol water partition coefficient for carbon nano-tubes based on the chiral vector. Comput. Biol. Chem., 2007, 31, 127-128.
    • (2007) Comput. Biol. Chem. , vol.31 , pp. 127-128
    • Toropov, A.A.1    Leszczynska, D.2    Leszczynski, J.3
  • 32
    • 0023965741 scopus 로고
    • SMILES, a chemical language and information system. 1. Introduction to methodology and encoding rules
    • Weininger, D. SMILES, a chemical language and information system. 1. Introduction to methodology and encoding rules. J. Chem. Inf. Comput. Sci, 1988, 28, 31-36.
    • (1988) J. Chem. Inf. Comput. Sci , vol.28 , pp. 31-36
    • Weininger, D.1
  • 34
    • 0000144425 scopus 로고
    • Smiles. 3. Depict. Graphical depiction of chemical structures
    • Weininger, D. Smiles. 3. Depict. Graphical depiction of chemical structures. J. Chem. Inf. Comput. Sci., 1990, 30, 237-243.
    • (1990) J. Chem. Inf. Comput. Sci. , vol.30 , pp. 237-243
    • Weininger, D.1
  • 35
    • 84886946583 scopus 로고    scopus 로고
    • Optimal descriptor as a translator of eclectic information into the prediction of membrane damage by means of various TiO2 nanoparticles
    • Toropova, A.P.; Toropov, A.A. Optimal descriptor as a translator of eclectic information into the prediction of membrane damage by means of various TiO2 nanoparticles. Chemosphere, 2013, 93, 2650-2655.
    • (2013) Chemosphere , vol.93 , pp. 2650-2655
    • Toropova, A.P.1    Toropov, A.A.2
  • 36
    • 84909979851 scopus 로고    scopus 로고
    • Optimal descriptor as a translator of eclectic data into prediction of cytotoxicity for metal oxide nanoparticles under different conditions
    • Toropova, A.P.; Toropov, A.A.; Rallo, R.; Leszczynska, D.; Lesz-czynski, J. Optimal descriptor as a translator of eclectic data into prediction of cytotoxicity for metal oxide nanoparticles under different conditions. Ecotoxicol. Environ. Saf., 2015, 112, 39-45.
    • (2015) Ecotoxicol. Environ. Saf. , vol.112 , pp. 39-45
    • Toropova, A.P.1    Toropov, A.A.2    Rallo, R.3    Leszczynska, D.4    Lesz-Czynski, J.5
  • 37
    • 77749340581 scopus 로고    scopus 로고
    • Measurement of multicomponent solubility parameters for graphene facilitates solvent discovery
    • Hernandez, Y.; Lotya, M.; Rickard, D.; Bergin, D.S. ; Jonathan N. and Coleman, J. N. Measurement of multicomponent solubility parameters for graphene facilitates solvent discovery. Langmuir, 2010, 26, 3208–3213.
    • (2010) Langmuir , vol.26 , pp. 3208-3213
    • Hernandez, Y.1    Lotya, M.2    Rickard, D.3    Bergin, D.S.4    Jonathan, N.5    Coleman, J.N.6
  • 38
    • 84900581022 scopus 로고    scopus 로고
    • Optimal descriptor as a translator of eclectic data into endpoint prediction: Mutagenicity of fullerene as a mathematical function of conditions
    • Toropov, A.A.; Toropova, A.P. Optimal descriptor as a translator of eclectic data into endpoint prediction: Mutagenicity of fullerene as a mathematical function of conditions. Chemosphere, 2014, 104, 262-264.
    • (2014) Chemosphere , vol.104 , pp. 262-264
    • Toropov, A.A.1    Toropova, A.P.2
  • 40
    • 84922673779 scopus 로고    scopus 로고
    • Quasi-QSAR for mutagenic potential of multi-walled carbon-nanotubes
    • Toropova, A.P.; Toropov, A.A. Quasi-QSAR for mutagenic potential of multi-walled carbon-nanotubes. Chemosphere, 2015, 124, 40–46.
    • (2015) Chemosphere , vol.124 , pp. 40-46
    • Toropova, A.P.1    Toropov, A.A.2
  • 41
    • 84925729852 scopus 로고    scopus 로고
    • Optimal nano-descriptors as translators of eclectic data into prediction of the cell membrane damage by means of nano metal-oxides
    • Toropova, A.P.; Toropov, A.A.; Benfenati, E.; Korenstein, R.; Leszczynska, D.; Leszczynski, J. Optimal nano-descriptors as translators of eclectic data into prediction of the cell membrane damage by means of nano metal-oxides. Environ. Sci. Pollut. Res., 2015, 22, 745–757.
    • (2015) Environ. Sci. Pollut. Res. , vol.22 , pp. 745-757
    • Toropova, A.P.1    Toropov, A.A.2    Benfenati, E.3    Korenstein, R.4    Leszczynska, D.5    Leszczynski, J.6
  • 42
    • 13844299300 scopus 로고    scopus 로고
    • Nearest neighboring code and hydrogen bond index in labeled hydrogen-filled graph and graph of atomic orbitals: Application to model of normal boiling points of haloal-kanes
    • Toropov A., Toropova A. Nearest neighboring code and hydrogen bond index in labeled hydrogen-filled graph and graph of atomic orbitals: Application to model of normal boiling points of haloal-kanes, J. Mol. Structure: THEOCHEM, 2004, 711 (1-3), pp. 173-183.
    • (2004) J. Mol. Structure: THEOCHEM , vol.711 , Issue.1-3 , pp. 173-183
    • Toropov, A.T.1
  • 43
    • 84934755708 scopus 로고    scopus 로고
    • Accessed January 20, 2015
    • MEMSnet, https://www.memsnet.org/material/, Accessed January 20, 2015
    • Memsnet
  • 44
    • 84905248676 scopus 로고    scopus 로고
    • Optimal descriptor as a translator of eclectic information into the prediction of membrane damage: He case of a group of ZnO and TiO2 nanoparticles
    • Toropova, A.P.; Toropov, A.A.; Benfenati, E.; Puzyn, T.; Lesz-czynska, D.; Leszczynski, J. Optimal descriptor as a translator of eclectic information into the prediction of membrane damage: he case of a group of ZnO and TiO2 nanoparticles. Ecotoxicol. Environ. Saf., 2014, 108, 203-209.
    • (2014) Ecotoxicol. Environ. Saf. , vol.108 , pp. 203-209
    • Toropova, A.P.1    Toropov, A.A.2    Benfenati, E.3    Puzyn, T.4    Lesz-Czynska, D.5    Leszczynski, J.6
  • 47
    • 84934767516 scopus 로고    scopus 로고
    • Accessed January 20, 2015
    • CORAL, http://www.insilico.eu/coral, Accessed January 20, 2015
    • CORAL
  • 48
    • 84887307233 scopus 로고    scopus 로고
    • CORAL software: Prediction of carcinogenicity of drugs by means of the Monte Carlo method
    • Toropova, A.P.; Toropov, A.A. CORAL software: Prediction of carcinogenicity of drugs by means of the Monte Carlo method. Eur. J. Pharm. Sci., 2014, 52, 21-25.
    • (2014) Eur. J. Pharm. Sci. , vol.52 , pp. 21-25
    • Toropova, A.P.1    Toropov, A.A.2
  • 50
    • 84868210651 scopus 로고    scopus 로고
    • Introduction of rm2 (rank) metric incorporating rank-order predictions as an additional tool for validation of QSAR/QSPR models
    • Roy, K.; Mitra, I.; Ojha, P.K.; Kar, S.; Das, R.N.; Kabir, H. Introduction of rm2 (rank) metric incorporating rank-order predictions as an additional tool for validation of QSAR/QSPR models. Chemometr. Intell. Lab. Syst., 2012, 118, 200–210.
    • (2012) Chemometr. Intell. Lab. Syst. , vol.118 , pp. 200-210
    • Roy, K.1    Mitra, I.2    Ojha, P.K.3    Kar, S.4    Das, R.N.5    Kabir, H.6


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