-
1
-
-
33646360823
-
An adaptive immune reaction may be necessary for cancer development
-
Prehn, R.T. (2006) An adaptive immune reaction may be necessary for cancer development. Theor. Biol. Med. Model 3(1), 6.
-
(2006)
Theor. Biol. Med. Model
, vol.3
, Issue.1
, pp. 6
-
-
Prehn, R.T.1
-
2
-
-
4143141823
-
The immunobiology of cancer immunosurveillance and immunoediting
-
Dunn, G.P., Old, L.J., and Shreiber, R.D. (2004) The immunobiology of cancer immunosurveillance and immunoediting. Immunity 21,137-148.
-
(2004)
Immunity
, vol.21
, pp. 137-148
-
-
Dunn, G.P.1
Old, L.J.2
Shreiber, R.D.3
-
3
-
-
27744597231
-
Autoantibodies in breast cancer sera: Candidate biomarkers and reporters of tumorigenesis
-
Madrid, F.F. (2005) Autoantibodies in breast cancer sera: Candidate biomarkers and reporters of tumorigenesis. Cancer Lett. 230,187-198.
-
(2005)
Cancer Lett
, vol.230
, pp. 187-198
-
-
Madrid, F.F.1
-
4
-
-
12244296118
-
Finger printing the circulating repertoire of antibodies from cancer patients
-
Mintz, P.J., Kim, J., Do, K.A., Wang, X., Zinner, R.G., Cristofanilli, M., Arap, M.A., Hong, W.K., Troncoso, P., Logothetis, C.J., Pasqualini, R., and Arap, W. (2003) Finger printing the circulating repertoire of antibodies from cancer patients. Nat Biotechnol. 21, 57-63.
-
(2003)
Nat Biotechnol
, vol.21
, pp. 57-63
-
-
Mintz, P.J.1
Kim, J.2
Do, K.A.3
Wang, X.4
Zinner, R.G.5
Cristofanilli, M.6
Arap, M.A.7
Hong, W.K.8
Troncoso, P.9
Logothetis, C.J.10
Pasqualini, R.11
Arap, W.12
-
5
-
-
25144483466
-
Autoantibody signatures in prostate cancer
-
Wang, X., Yu, J., Sreekumar, A., Varambally, S., Shen, R., Giacherio, D., Mehra, R., Montie, J.E., Pienta, K.J., Sanda, M.G., Kantoff, P.W., Rubin, M.A., Wei, J.T., Ghosh, D., and Chinnaiyan, A.M. (2005) Autoantibody signatures in prostate cancer. N. Engl. J. Med. 353, 1224-1235.
-
(2005)
N. Engl. J. Med
, vol.353
, pp. 1224-1235
-
-
Wang, X.1
Yu, J.2
Sreekumar, A.3
Varambally, S.4
Shen, R.5
Giacherio, D.6
Mehra, R.7
Montie, J.E.8
Pienta, K.J.9
Sanda, M.G.10
Kantoff, P.W.11
Rubin, M.A.12
Wei, J.T.13
Ghosh, D.14
Chinnaiyan, A.M.15
-
6
-
-
25444508917
-
Antigen microarray profiling in rheumatoid arthritis
-
Hueber, W. (2005) Antigen microarray profiling in rheumatoid arthritis. Arthritis Rheum. 52, 2645-2655.
-
(2005)
Arthritis Rheum
, vol.52
, pp. 2645-2655
-
-
Hueber, W.1
-
7
-
-
0038605735
-
Protein and peptide array analysis of autoimmune disease
-
Robinson, W.H., Steinman, L., and Utz, P.J. (2002) Protein and peptide array analysis of autoimmune disease. BioTechniques 33, S66-S69.
-
(2002)
BioTechniques
, vol.33
-
-
Robinson, W.H.1
Steinman, L.2
Utz, P.J.3
-
8
-
-
33744455712
-
Development of a "reverse capture" autoantibody microarray for studies of antigen-autoantibody profiling
-
Qin, S., Qui, W., Ehrlich, J.R., Ferdinand, A.S., Richie, J.P., O'Leary, M.P., Lee, M.L.T., and Liu, B.C.-S. (2006) Development of a "reverse capture" autoantibody microarray for studies of antigen-autoantibody profiling. Proteomics 6, 3199-3209.
-
(2006)
Proteomics
, vol.6
, pp. 3199-3209
-
-
Qin, S.1
Qui, W.2
Ehrlich, J.R.3
Ferdinand, A.S.4
Richie, J.P.5
O'Leary, M.P.6
Lee, M.L.T.7
Liu, B.C.-S.8
-
9
-
-
34250669213
-
The 'reverse capture' autoantibody microarray: A native antigen-based platform for autoantibody profiling
-
Ehrlich, J.R., Qin, S., and Liu, B.C.-S. (2006) The 'reverse capture' autoantibody microarray: A native antigen-based platform for autoantibody profiling. Nat. Protocols 1, 452-460.
-
(2006)
Nat. Protocols
, vol.1
, pp. 452-460
-
-
Ehrlich, J.R.1
Qin, S.2
Liu, B.C.-S.3
-
10
-
-
33745581407
-
-
Liu, B.C.-S. and Ehrlich, J.R. (2006) Proteomics approaches to urologie diseases. Expert Rev. Proteomics 3, 283-296.
-
Liu, B.C.-S. and Ehrlich, J.R. (2006) Proteomics approaches to urologie diseases. Expert Rev. Proteomics 3, 283-296.
-
-
-
-
11
-
-
0035375137
-
Computational analysis of microarray data
-
Quackenbush, J. (2001) Computational analysis of microarray data. Nat. Rev. Genet. 2, 418-427.
-
(2001)
Nat. Rev. Genet
, vol.2
, pp. 418-427
-
-
Quackenbush, J.1
-
12
-
-
0035501370
-
Microarrays: Handling the deluge of data and extracting reliable information
-
Hess, K.R., Zhang, W., Baggerly, K.A., Stivers, D.N., and Coombes, K.R. (2001) Microarrays: handling the deluge of data and extracting reliable information. Trends Biotechnol. 19, 463-468.
-
(2001)
Trends Biotechnol
, vol.19
, pp. 463-468
-
-
Hess, K.R.1
Zhang, W.2
Baggerly, K.A.3
Stivers, D.N.4
Coombes, K.R.5
-
13
-
-
15044352042
-
-
Hoboken, New Jersey: Wiley Interscience
-
McLachlan, G.J., Do, K.A., and Ambroise, C. (2004) Analyzing Microarray Gene Expression Data. Hoboken, New Jersey: Wiley Interscience.
-
(2004)
Analyzing Microarray Gene Expression Data
-
-
McLachlan, G.J.1
Do, K.A.2
Ambroise, C.3
-
14
-
-
0036898577
-
Microarray data normalization and transformation
-
Quackenbush, J. (2002) Microarray data normalization and transformation. Nat. Genet. 32, 496-501.
-
(2002)
Nat. Genet
, vol.32
, pp. 496-501
-
-
Quackenbush, J.1
-
15
-
-
0034656561
-
Normalization strategies for cDNA microarrays
-
article e47
-
Schuchhardt, J., Beule, D., Malik, A., Wolski, E., Eickhoff, H., Lehrach, H., and Herzel, H. (2000) Normalization strategies for cDNA microarrays. Nucleic Acids Res. 28 (article e47).
-
(2000)
Nucleic Acids Res
, vol.28
-
-
Schuchhardt, J.1
Beule, D.2
Malik, A.3
Wolski, E.4
Eickhoff, H.5
Lehrach, H.6
Herzel, H.7
-
16
-
-
1342294092
-
Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation
-
article e15
-
Yang, Y.H., Dudoit, S., Luu, P., Lin, D.M., Peng, V., Ngai, J., and Speed, T.P. (2002) Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Res. 30 (article e15).
-
(2002)
Nucleic Acids Res
, vol.30
-
-
Yang, Y.H.1
Dudoit, S.2
Luu, P.3
Lin, D.M.4
Peng, V.5
Ngai, J.6
Speed, T.P.7
-
17
-
-
0034927555
-
Analysis of variance for gene expression microarray data
-
Kerr, K., Martin, M., and Churchill, G. (2000) Analysis of variance for gene expression microarray data. J. Comput. Biol. 7, 819-837.
-
(2000)
J. Comput. Biol
, vol.7
, pp. 819-837
-
-
Kerr, K.1
Martin, M.2
Churchill, G.3
-
18
-
-
0035687554
-
Assessing gene significance from cDNA microarray expression data via mixed models
-
Wolfinger, R.D., Gibson, G., Wolfinger, E.D., Bennett, L., Hamadeh, H., Bushel, P., Afshari, C., and Paules, R.S. (2001) Assessing gene significance from cDNA microarray expression data via mixed models. J. Comput. Biol. 8, 625-637.
-
(2001)
J. Comput. Biol
, vol.8
, pp. 625-637
-
-
Wolfinger, R.D.1
Gibson, G.2
Wolfinger, E.D.3
Bennett, L.4
Hamadeh, H.5
Bushel, P.6
Afshari, C.7
Paules, R.S.8
-
19
-
-
84947318637
-
Locally weighted regression: An approach to regression analysis by local fitting
-
Cleveland, W.S. and Devlin, S.J. (1988) Locally weighted regression: An approach to regression analysis by local fitting. J. Am. Stat. Assoc. 83, 596-610.
-
(1988)
J. Am. Stat. Assoc
, vol.83
, pp. 596-610
-
-
Cleveland, W.S.1
Devlin, S.J.2
-
20
-
-
0037188875
-
Normalization and analysis of DNA microarray data by self-consistency and local regression
-
article
-
Kepler, T.B., Crosby, L., and Morgan, K.T. (2002) Normalization and analysis of DNA microarray data by self-consistency and local regression. Genome Biol. 3 (article 0037.1-0037.12).
-
(2002)
Genome Biol
, vol.3
-
-
Kepler, T.B.1
Crosby, L.2
Morgan, K.T.3
-
21
-
-
0034960264
-
Missing value estimation methods for DNA microarrays
-
Troyanskaya, O., Cantor, M., Sherlock, G., Brown, P., Hastie, T., Tibshirani, R., Botstein, D., and Altman, R.B. (2001) Missing value estimation methods for DNA microarrays. Bioinformatics 17, 520-525.
-
(2001)
Bioinformatics
, vol.17
, pp. 520-525
-
-
Troyanskaya, O.1
Cantor, M.2
Sherlock, G.3
Brown, P.4
Hastie, T.5
Tibshirani, R.6
Botstein, D.7
Altman, R.B.8
-
22
-
-
23844434593
-
Unsupervised pattern recognition: An introduction to the whys and wherefores of clustering microarray data
-
Boutros, P.C. and Okey, A.B. (2005) Unsupervised pattern recognition: an introduction to the whys and wherefores of clustering microarray data. Brief. Bioinform. 6, 331-343.
-
(2005)
Brief. Bioinform
, vol.6
, pp. 331-343
-
-
Boutros, P.C.1
Okey, A.B.2
-
23
-
-
0032441150
-
Cluster analysis and display of genome-wide expression patterns
-
Eisen, M.B., Spellmann, P.T., Brown, P.O., and Botstein, D. (1998) Cluster analysis and display of genome-wide expression patterns. Proc. Natl. Acad. Sci. U.S.A. 95, 14863-14868.
-
(1998)
Proc. Natl. Acad. Sci. U.S.A
, vol.95
, pp. 14863-14868
-
-
Eisen, M.B.1
Spellmann, P.T.2
Brown, P.O.3
Botstein, D.4
-
24
-
-
0033027794
-
Interpreting patterns of gene expression with self-organizing maps: Methods and application to hematopoietic differentiation
-
Tamayo, P., Slonim, D., Mesirov, J., Zhu, Q., Kitareewan, S., Dmitrovsky, E. Lander, E.S., and Golub, T.R. (1999) Interpreting patterns of gene expression with self-organizing maps: Methods and application to hematopoietic differentiation. Proc. Natl. Acad. Sci. U.S.A. 96, 2907-2912.
-
(1999)
Proc. Natl. Acad. Sci. U.S.A
, vol.96
, pp. 2907-2912
-
-
Tamayo, P.1
Slonim, D.2
Mesirov, J.3
Zhu, Q.4
Kitareewan, S.5
Dmitrovsky, E.6
Lander, E.S.7
Golub, T.R.8
-
25
-
-
0036203115
-
A mixture model-based approach to the clustering of microarray expression data
-
McLachlan, G.J., Bean, R.W., and Peel, D. (2002) A mixture model-based approach to the clustering of microarray expression data. Bioinformatics 18, 413-422.
-
(2002)
Bioinformatics
, vol.18
, pp. 413-422
-
-
McLachlan, G.J.1
Bean, R.W.2
Peel, D.3
-
26
-
-
0034782618
-
Modelbased clustering and data transformations for gene expression data
-
Yeung, K.Y., Fraley, C., Murua, A., Raftery, A.E., and Ruzzo, W.L. (2001) Modelbased clustering and data transformations for gene expression data. Bioinformatics 17, 977-987.
-
(2001)
Bioinformatics
, vol.17
, pp. 977-987
-
-
Yeung, K.Y.1
Fraley, C.2
Murua, A.3
Raftery, A.E.4
Ruzzo, W.L.5
-
27
-
-
33747890494
-
A mixture model with random-effects components for clustering correlated geneexpression profiles
-
Ng, S.K., McLachlan, G.J., Wang, K., Ben-Tovim Jones, L., and Ng, S.-W. (2006) A mixture model with random-effects components for clustering correlated geneexpression profiles. Bioinformatics 22, 1745-1752.
-
(2006)
Bioinformatics
, vol.22
, pp. 1745-1752
-
-
Ng, S.K.1
McLachlan, G.J.2
Wang, K.3
Ben-Tovim Jones, L.4
Ng, S.-W.5
-
28
-
-
0037339264
-
Clustering of time-course gene expression data using a mixed-effects model with B-splines
-
Luan, Y. and Li, H. (2003) Clustering of time-course gene expression data using a mixed-effects model with B-splines. Bioinformatics 19, 474-482.
-
(2003)
Bioinformatics
, vol.19
, pp. 474-482
-
-
Luan, Y.1
Li, H.2
-
29
-
-
0037667290
-
Clustering geneexpression data with repeated measurements
-
article R34
-
Yeung, K.Y., Medvedovic, M., and Bumgamer, R.E. (2003) Clustering geneexpression data with repeated measurements. Genome Biol. 4 (article R34).
-
(2003)
Genome Biol
, vol.4
-
-
Yeung, K.Y.1
Medvedovic, M.2
Bumgamer, R.E.3
-
30
-
-
0036161259
-
Gene selection for cancer classification using support vector machines
-
Guyon, L., Weston, J., Barnhill, S., and Vapnik, V. (2002) Gene selection for cancer classification using support vector machines. Mach. Learn. 46, 389-422.
-
(2002)
Mach. Learn
, vol.46
, pp. 389-422
-
-
Guyon, L.1
Weston, J.2
Barnhill, S.3
Vapnik, V.4
-
31
-
-
0347201147
-
Multiclass cancer diagnosis using tumor gene expression signatures
-
Ramaswamy, S., Tamayo, P., Rifkin, R., Mukherjee, S., Yeang, C.-H., Angelo, M., Ladd, C., Reich, M., Latulippe, E., Mesirov, J.P., Poggio, T., Gerald, W., Loda, M., Lander, E.S., and Golub, T.R. (2001) Multiclass cancer diagnosis using tumor gene expression signatures. Proc. Natl. Acad. Sci. U.S.A. 98, 15149-15154.
-
(2001)
Proc. Natl. Acad. Sci. U.S.A
, vol.98
, pp. 15149-15154
-
-
Ramaswamy, S.1
Tamayo, P.2
Rifkin, R.3
Mukherjee, S.4
Yeang, C.-H.5
Angelo, M.6
Ladd, C.7
Reich, M.8
Latulippe, E.9
Mesirov, J.P.10
Poggio, T.11
Gerald, W.12
Loda, M.13
Lander, E.S.14
Golub, T.R.15
-
32
-
-
0037076322
-
Selection bias in gene extraction on the basis of microarray gene-expression data
-
Ambroise, C. and McLachlan, G.J. (2002) Selection bias in gene extraction on the basis of microarray gene-expression data. Proc. Natl. Acad. Sci. U.S.A. 99, 6562-6566.
-
(2002)
Proc. Natl. Acad. Sci. U.S.A
, vol.99
, pp. 6562-6566
-
-
Ambroise, C.1
McLachlan, G.J.2
-
33
-
-
84922908140
-
Semi-supervised methods to predict patient survival from gene expression data
-
Bair, E. and Tibshirani, R. (2004) Semi-supervised methods to predict patient survival from gene expression data. PloS Biol. 2, 511-522.
-
(2004)
PloS Biol
, vol.2
, pp. 511-522
-
-
Bair, E.1
Tibshirani, R.2
-
34
-
-
18544365698
-
Gene-expression profiles predict survival of patients with lung adenocarcinoma
-
Beer, D.J., Kardia, S.L.R., Huang, C.-C., Giordano, TJ., Levin, A.M., Misek, D.E., Lin, L., Chen, G., Gharib, T.G., Thomas, D.G., Lizyness, M.L., Kuick, R., Hayasaka, S., Taylor, J.M.G., Iannettoni, M.D., Orringer, M.B., and Hanash, S. (2002) Gene-expression profiles predict survival of patients with lung adenocarcinoma. Nat. Med. 8, 816-824.
-
(2002)
Nat. Med
, vol.8
, pp. 816-824
-
-
Beer, D.J.1
Kardia, S.L.R.2
Huang, C.-C.3
Giordano, T.J.4
Levin, A.M.5
Misek, D.E.6
Lin, L.7
Chen, G.8
Gharib, T.G.9
Thomas, D.G.10
Lizyness, M.L.11
Kuick, R.12
Hayasaka, S.13
Taylor, J.M.G.14
Iannettoni, M.D.15
Orringer, M.B.16
Hanash, S.17
|