Proteomic analysis of the asthmatic airway

Advances in Experimental Medicine and Biology

Volumn 795, Issue , 2014, Pages 221-232

  Wiktorowicz, John E ^a   Jamaluddin, Mohammad ^b  

^a University of Texas Medical Branch School of Medicine   (United States)

^b UNIVERSITY OF TEXAS MEDICAL BRANCH   (United States)

Author keywords

Airway inflammation; Asthma; Bronchoalveolar lavage; Bronchoscopic microsampling; Epithelial lining fluid; Exhaled breath condensate; Induced sputum; Proteomics; Sample prep; Size exclusion chromatography

Indexed keywords

GLUCOCORTICOID; GLUTATHIONE; PLACEBO; PREDNISONE;

ARTICLE; ASTHMA; BRONCHOSCOPY; BRONCHUS BIOPSY; CHRONIC OBSTRUCTIVE LUNG DISEASE; CLASSIFIER; EPITHELIAL LINING FLUID; EXHALED BREATH CONDENSATE; EXPIRED AIR; GEL PERMEATION CHROMATOGRAPHY; HUMAN; LUNG ALVEOLUS EPITHELIUM; LUNG FLUID; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; NONHUMAN; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEIN PROCESSING; PROTEOMICS; RESPIRATORY TRACT INFLAMMATION; SAMPLING; SPUTUM;

ASTHMA; BIOLOGICAL MARKERS; BODY FLUIDS; BREATH TESTS; BRONCHOALVEOLAR LAVAGE FLUID; BRONCHOSCOPY; CHROMATOGRAPHY, LIQUID; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; HUMANS; PROTEOME; PROTEOMICS; SPECIMEN HANDLING; SPUTUM; TANDEM MASS SPECTROMETRY;

EID: 84934441007     PISSN: 00652598     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-4614-8603-9_14     Document Type: Article

References (43)

1. Ali M, Lillehoj EP, Park Y et al (2011) Analysis of the proteome of human airway epithelial secretions. Proteome Sci 9:4
2. Altraja S, Jaama J, Valk E et al (2009) Changes in the proteome of human bronchial epithelial cells following stimulation with leucotriene E4 and transforming growth factor-beta1. Respirology 14:39-45
3. Altraja S, Jaama J, Altraja A (2010) Proteome changes of human bronchial epithelial cells in response to pro-inflammatory mediator leukotriene E4 and pro-remodelling factor TGF-beta1. J Proteomics 73:1230-1240
4. Brasier AR, Garcia J, Wiktorowicz JE et al (2012a) Discovery proteomics and nonparametric modeling pipeline in the development of a candidate biomarker panel for dengue hemorrhagic fever. Clin Transl Sci 5:8-20
5. Brasier AR, Ju H, Garcia J et al (2012b) A three-component biomarker panel for prediction of dengue hemorrhagic fever. Am J Trop Med Hyg 86:341-348
6. Cao R, Wang TT, DeMaria G et al (2012) Mapping the protein domain structures of the respiratory mucins: a mucin proteome coverage study. J Proteome Res 11:4013-4023
7. Cederfur C, Malmstrom J, Nihlberg K et al (2012) Glycoproteomic identification of galectin-3 and -8 ligands in bronchoalveolar lavage of mild asthmatics and healthy subjects. Biochim Biophys Acta 1820:1429-1436
8. Fitzpatrick AM, Brown LA, Holguin F et al (2009a) Levels of nitric oxide oxidation products are increased in the epithelial lining fluid of children with persistent asthma. J Allergy Clin Immunol 124:990-996, e1-9
9. Fitzpatrick AM, Teague WG, Holguin F et al (2009b) Airway glutathione homeostasis is altered in children with severe asthma: evidence for oxidant stress. J Allergy Clin Immunol 123:146-152, e8
10. Franciosi L, Govorukhina N, Ten Hacken N et al (2011) Proteomics of epithelial lining fluid obtained by bronchoscopic microprobe sampling. Methods Mol Biol 790:17-28
11. Gharib SA, Nguyen EV, Lai Y et al (2011) Induced sputum proteome in healthy subjects and asthmatic patients. J Allergy Clin Immunol 128:1176-1184, e6
12. Giorgianni F, Mileo V, Desiderio DM et al (2012) Characterization of the phosphoproteome in human bronchoalveolar lavage fluid. Int J Proteomics 2012:460261
13. Gundry RL, Fu Q, Jelinek CA et al (2007) Investigation of an albumin-enriched fraction of human serum and its albuminome. Proteomics Clin Appl 1:73-88
14. Gundry RL, White MY, Nogee J et al (2009) Assessment of albumin removal from an immunoaffinity spin column: critical implications for proteomic examination of the albuminome and albumin-depleted samples. Proteomics 9:2021-2028
15. Haenen S, Vanoirbeek JA, De Vooght V et al (2010) Proteome analysis of multiple compartments in a mouse model of chemical-induced asthma. J Proteome Res 9:5868-5876
16. Holguin F, Fitzpatrick A (2010) Obesity, asthma, and oxidative stress. J Appl Physiol 108:754-759
17. Kipnis E, Hansen K, Sawa T et al (2008) Proteomic analysis of undiluted lung epithelial lining fluid. Chest 134:338-345
18. Kroeker AL, Ezzati P, Halayko AJ et al (2012) Response of primary human airway epithelial cells to influenza infection: a quantitative proteomic study. J Proteome Res 11:4132-4146
19. Li SJ, Peng M, Li H et al (2009) Sys-BodyFluid: a systematical database for human body fluid proteome research. Nucleic Acids Res 37:D907-D912
20. Lim JR, Gupta SK, Croffie JM et al (2004) White specks in the esophageal mucosa: an endoscopic manifestation of non-reflux eosinophilic esophagitis in children. Gastrointest Endosc 59:835-838
21. Lin JL, Bonnichsen MH, Nogeh EU et al (2010) Proteomics in detection and monitoring of asthma and smoking-related lung diseases. Expert Rev Proteomics 7:361-372
22. Lovric J (2011) Introducing proteomics: from concepts to sample separation, mass spectrometry, and data analysis. Wiley, West Sussex
23. Mishra NC (2010) Introduction to proteomics: principles and applications. Wiley, Hoboken, NJ
24. Montuschi P (2007) Analysis of exhaled breath condensate in respiratory medicine: methodological aspects and potential clinical applications. Ther Adv Respir Dis 1:5-23
25. Moore WC, Meyers DA, Wenzel SE et al (2010) Identification of asthma phenotypes using cluster analysis in the Severe Asthma Research Program. Am J Respir Crit Care Med 181:315-323
26. Nagai T, Nakao M, Shimizu Y et al (2011) Proteomic analysis of anti-inflammatory effects of a kampo (Japanese Herbal) medicine "Shoseiryuto (Xiao-Qing-Long-Tang)" on airway inflammation in a mouse model. Evidence-based complementary and alternative medicine. eCAM 2011:604196
27. Nicholas B, Djukanović R (2009) Induced sputum: a window to lung pathology. Biochem Soc Trans 037:868-872
28. Noel-Georis I, Bernard A, Falmagne P et al (2002) Database of bronchoalveolar lavage fluid proteins. J Chromatogr B 771:221-236
29. O'Neil SE, Lundback B, Lotvall J (2011a) Proteomics in asthma and COPD phenotypes and endotypes for biomarker discovery and improved understanding of disease entities. J Proteomics 75:192-201
30. O'Neil SE, Sitkauskiene B, Babusyte A et al (2011b) Network analysis of quantitative proteomics on asthmatic bronchi: effects of inhaled glucocorticoid treatment. Respir Res 12:124
31. Park CS, Rhim T (2011) Application of proteomics in asthma research. Expert Rev Proteomics 8:221-230
32. Pretzer E, Wiktorowicz JE (2008) Saturation fluorescence labeling of proteins for proteomic analy ses. Anal Biochem 374:250-262
33. Quesada Calvo F, Fillet M, Renaut J et al (2011) Potential therapeutic target discovery by 2D-DIGE proteomic analysis in mouse models of asthma. J Proteome Res 10:4291-4301
34. Richter R, Schulz-Knappe P, Schrader M et al (1999) Composition of the peptide fraction in human blood plasma: database of circulating human peptides. J Chromatogr B Biomed Sci Appl 726:25-35
35. Rottoli P, Bargagli E, Landi C et al (2009) Proteomic analysis in interstitial lung diseases: a review. Curr Opin Pulm Med 15:470-478
36. Seferovic MD, Krughkov V, Pinto D et al (2008) Quantitative 2-D gel electrophoresis-based expression proteomics of albumin and IgG immunodepleted plasma. J Chromatogr B Analyt Technol Biomed Life Sci 865:147-152
37. Simpson RJ, Lim JW, Moritz RL et al (2009) Exosomes: proteomic insights and diagnostic potential. Expert Rev Proteomics 6:267-283
38. Terracciano R, Preiano M, Palladino GP et al (2011) Peptidome profiling of induced sputum by mesoporous silica beads and MALDI-TOF MS for non-invasive biomarker discovery of chronic inflammatory lung diseases. Proteomics 11:3402-3414
39. Tyagarajan K, Pretzer EL, Wiktorowicz JE (2003) Thiol-reactive dyes for fluorescence labeling of proteomic samples. Electrophoresis 24:2348-2358
40. Vento G, Tirone C, Aurilia C et al (2010) Proteomics and neonatal infection. Minerva Pediatr 62:47-49
41. Wiktorowicz JE, Soman K, Haag A (2011) Discovery strategies for proteomic profiling of airway diseases. Curr Proteomics 8:97-110
42. Xu YD, Cui JM, Wang Y et al (2010) The early asthmatic response is associated with glycolysis, calcium binding and mitochondria activity as revealed by proteomic analysis in rats. Respir Res 11:107
43. Zhang L, Wang M, Kang X et al (2009) Oxidative stress and asthma: proteome analysis of chitinase-like proteins and FIZZ1 in lung tissue and bronchoalveolar lavage fluid. J Proteome Res 8:1631-1638