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Volumn 941, Issue , 2012, Pages 157-169

Plasmid template design and in vitro transcription of short RNAs within a "structure cassette" for structure probing experiments

Author keywords

In vitro transcription; Reverse transcriptase; RNA structure probing; SHAPE; Structure cassette

Indexed keywords

POLYACRYLAMIDE GEL;

EID: 84934438601     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-62703-113-4_12     Document Type: Article
Times cited : (4)

References (9)
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    • (2005) J Am Chem Soc , vol.127 , pp. 4223-4231
    • Merino, E.J.1    Wilkinson, K.A.2    Coughlan, J.L.3    Weeks, K.M.4
  • 2
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    • Developing three-dimensional models of putative-folding intermediates of the HDV ribozyme
    • Reymond C, Levesque D, Bisaillon M, Perreault JP (2010) Developing three-dimensional models of putative-folding intermediates of the HDV ribozyme. Structure 18:1608-1616
    • (2010) Structure , vol.18 , pp. 1608-1616
    • Reymond, C.1    Levesque, D.2    Bisaillon, M.3    Perreault, J.P.4
  • 3
    • 16344370497 scopus 로고    scopus 로고
    • RNA SHAPE chemistry reveals nonhierarchical interactions dominate equilibrium structural transitions in tRNA(Asp) transcripts
    • Wilkinson KA, Merino EJ, Weeks KM (2005) RNA SHAPE chemistry reveals nonhierarchical interactions dominate equilibrium structural transitions in tRNA(Asp) transcripts. J Am Chem Soc 127:4659-4667
    • (2005) J Am Chem Soc , vol.127 , pp. 4659-4667
    • Wilkinson, K.A.1    Merino, E.J.2    Weeks, K.M.3
  • 4
    • 70349145411 scopus 로고    scopus 로고
    • Time-resolved RNA SHAPE chemistry: Quantitative RNA structure analysis in one-second snapshots and at single-nucleotide resolution
    • Mortimer SA, Weeks KM (2009) Time-resolved RNA SHAPE chemistry: quantitative RNA structure analysis in one-second snapshots and at single-nucleotide resolution. Nat Protoc 4: 1413-1421
    • (2009) Nat Protoc , vol.4 , pp. 1413-1421
    • Mortimer, S.A.1    Weeks, K.M.2
  • 6
    • 33947720028 scopus 로고    scopus 로고
    • Selective 2-hydroxyl acylation analyzed by primer extension (SHAPE): Quantitative RNA structure analysis at single nucleotide resolution
    • Wilkinson KA, Merino EJ, Weeks KM (2006) Selective 2-hydroxyl acylation analyzed by primer extension (SHAPE): quantitative RNA structure analysis at single nucleotide resolution. Nat Protoc 1:1610-1616
    • (2006) Nat Protoc , vol.1 , pp. 1610-1616
    • Wilkinson, K.A.1    Merino, E.J.2    Weeks, K.M.3
  • 7
    • 52949152433 scopus 로고    scopus 로고
    • ShapeFinder: A software system for high-throughput quantitative analysis of nucleic acid reactivity information resolved by capillary electrophoresis
    • Vasa SM, Guex N, Wilkinson KA, Weeks KM, Giddings MC (2008) ShapeFinder: a software system for high-throughput quantitative analysis of nucleic acid reactivity information resolved by capillary electrophoresis. RNA 14: 1979-1990
    • (2008) RNA , vol.14 , pp. 1979-1990
    • Vasa, S.M.1    Guex, N.2    Wilkinson, K.A.3    Weeks, K.M.4    Giddings, M.C.5
  • 8
    • 27744554044 scopus 로고    scopus 로고
    • RNA flexibility in the dimerization domain of a gamma retrovirus
    • Badorrek CS, Weeks KM (2005) RNA flexibility in the dimerization domain of a gamma retrovirus. Nat Chem Biol 1:104-111
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    • Badorrek, C.S.1    Weeks, K.M.2
  • 9
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    • General plasmids for producing RNA in vitro transcripts with homogeneous ends
    • Walker SC, Avis JM, Conn GL (2003) General plasmids for producing RNA in vitro transcripts with homogeneous ends. Nucleic Acids Res 31:e82
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    • Walker, S.C.1    Avis, J.M.2    Conn, G.L.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.