메뉴 건너뛰기




Volumn 460, Issue , 2008, Pages 221-238

Public consortium efforts in toxicogenomics

Author keywords

Consortia; Public private partnerships; Standards; Toxicogenomics

Indexed keywords


EID: 84934435468     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-60327-48-9_11     Document Type: Article
Times cited : (20)

References (47)
  • 1
    • 0028806048 scopus 로고
    • Quantitative monitoring of gene expression patterns with a complementary DNA microarray
    • Schena, M., Shalon, D., Davis, R. W., and Brown, P. O. (1995) Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 270, 467-470.
    • (1995) Science , vol.270 , pp. 467-470
    • Schena, M.1    Shalon, D.2    Davis, R.W.3    Brown, P.O.4
  • 2
    • 0030669030 scopus 로고    scopus 로고
    • Exploring the metabolic and genetic control of gene expression on a genomic scale
    • DeRisi, J. L., Iyer, V. R., and Brown, P. O. (1997) Exploring the metabolic and genetic control of gene expression on a genomic scale. Science 278, 680-686.
    • (1997) Science , vol.278 , pp. 680-686
    • DeRisi, J.L.1    Iyer, V.R.2    Brown, P.O.3
  • 3
    • 0030023174 scopus 로고    scopus 로고
    • Simultaneous measurement of hundreds of liver proteins: Application in assessment of liver function
    • Anderson, N. L., Taylor, J., Hofmann, J. P., Esquer-Blasco, R., Swift, S., and Anderson, N. G. (1996) Simultaneous measurement of hundreds of liver proteins: application in assessment of liver function. Toxicol. Pathol. 24, 72-76.
    • (1996) Toxicol. Pathol , vol.24 , pp. 72-76
    • Anderson, N.L.1    Taylor, J.2    Hofmann, J.P.3    Esquer-Blasco, R.4    Swift, S.5    Anderson, N.G.6
  • 4
    • 0031280116 scopus 로고    scopus 로고
    • Differential display identified changes in mRNA levels in regenerating livers from chloroform-treated mice
    • Kegelmeyer, A. E., Sprankle, C. S., Horesovsky, G. J., and Butterworth, B. E. (1997) Differential display identified changes in mRNA levels in regenerating livers from chloroform-treated mice. Mol. Carcinog. 20, 288-297.
    • (1997) Mol. Carcinog , vol.20 , pp. 288-297
    • Kegelmeyer, A.E.1    Sprankle, C.S.2    Horesovsky, G.J.3    Butterworth, B.E.4
  • 6
    • 0006470452 scopus 로고    scopus 로고
    • Fluorescent cDNA microarray hybridization reveals complexity and heterogeneity of cellular genotoxic stress responses
    • Amundson, S. A., Bittner, M., Chen, Y., Trent, J., Meltzer, P., and Fornace, A. J. (1999) Fluorescent cDNA microarray hybridization reveals complexity and heterogeneity of cellular genotoxic stress responses. Oncogene 18, 3666-3672.
    • (1999) Oncogene , vol.18 , pp. 3666-3672
    • Amundson, S.A.1    Bittner, M.2    Chen, Y.3    Trent, J.4    Meltzer, P.5    Fornace, A.J.6
  • 7
    • 0032808416 scopus 로고    scopus 로고
    • Farr, S., and Dunn, R. T., 2nd. (1999) Concise review: gene expression applied to toxicology. Toxicol. Sci. 50, 1-9.
    • Farr, S., and Dunn, R. T., 2nd. (1999) Concise review: gene expression applied to toxicology. Toxicol. Sci. 50, 1-9.
  • 8
    • 0032773409 scopus 로고    scopus 로고
    • The complexity of radiation stress responses: Analysis by informatics and functional genomics approaches
    • Fornace, A. J., Amundson, S. A., Bittner, M., Myers, T. G., Meltzer, P., Weinstein, J. N., and Trent, J. (1999) The complexity of radiation stress responses: analysis by informatics and functional genomics approaches. Gene. Expr. 7, 387-400.
    • (1999) Gene. Expr , vol.7 , pp. 387-400
    • Fornace, A.J.1    Amundson, S.A.2    Bittner, M.3    Myers, T.G.4    Meltzer, P.5    Weinstein, J.N.6    Trent, J.7
  • 9
    • 0033573938 scopus 로고    scopus 로고
    • Global response of Saccharomyces cerevisiae to an alkylating agent
    • Jelinsky, S. A., and Samson, L. D. (1999) Global response of Saccharomyces cerevisiae to an alkylating agent. Proc. Natl. Acad. Sci. U. S. A. 96, 1486-1491.
    • (1999) Proc. Natl. Acad. Sci. U. S. A , vol.96 , pp. 1486-1491
    • Jelinsky, S.A.1    Samson, L.D.2
  • 11
    • 10544256600 scopus 로고    scopus 로고
    • Expression monitoring by hybridization to high-density oligonucleotide arrays
    • Lockhart, D. J., Dong, H., Byrne, M. C., Follettie, M. T., Gallo, M. V., Chee, M. S., et al. (1996) Expression monitoring by hybridization to high-density oligonucleotide arrays. Nat. Biotechnol. 14, 1675-1680.
    • (1996) Nat. Biotechnol , vol.14 , pp. 1675-1680
    • Lockhart, D.J.1    Dong, H.2    Byrne, M.C.3    Follettie, M.T.4    Gallo, M.V.5    Chee, M.S.6
  • 12
    • 0029812283 scopus 로고    scopus 로고
    • A DNA microarray system for analyzing complex DNA samples using two-color fluorescent probe hybridization
    • Shalon, D., Smith, S. J., and Brown, P. O. (1996) A DNA microarray system for analyzing complex DNA samples using two-color fluorescent probe hybridization. Genome Res. 6, 639-645.
    • (1996) Genome Res , vol.6 , pp. 639-645
    • Shalon, D.1    Smith, S.J.2    Brown, P.O.3
  • 13
    • 0031795422 scopus 로고    scopus 로고
    • Parallel production of oligonucleotide arrays using membranes and reagent jet printing
    • Stimpson, D. I., Cooley, P. W., Knepper, S. M., and Wallace, D. B. (1998) Parallel production of oligonucleotide arrays using membranes and reagent jet printing. BioTechniques 25, 886-890.
    • (1998) BioTechniques , vol.25 , pp. 886-890
    • Stimpson, D.I.1    Cooley, P.W.2    Knepper, S.M.3    Wallace, D.B.4
  • 15
    • 84984934346 scopus 로고    scopus 로고
    • Gene expression informatics-it's all in your mine
    • Bassett, D. E., Eisen, M. B., and Boguski, M. S. (1999) Gene expression informatics-it's all in your mine. Nat. Genet. 21, 51-55.
    • (1999) Nat. Genet , vol.21 , pp. 51-55
    • Bassett, D.E.1    Eisen, M.B.2    Boguski, M.S.3
  • 16
    • 0032863227 scopus 로고    scopus 로고
    • Large-scale gene expression data analysis: A new challenge to computational biologists
    • Zhang, M. Q. (1999) Large-scale gene expression data analysis: a new challenge to computational biologists. Genome Res. 9, 681-688.
    • (1999) Genome Res , vol.9 , pp. 681-688
    • Zhang, M.Q.1
  • 17
    • 0034714421 scopus 로고    scopus 로고
    • Gene expression data analysis
    • Brazma, A., and Vilo, J. (2000) Gene expression data analysis. FEBS Lett. 480, 17-24.
    • (2000) FEBS Lett , vol.480 , pp. 17-24
    • Brazma, A.1    Vilo, J.2
  • 18
    • 85069123452 scopus 로고    scopus 로고
    • ILSI, Available at
    • ILSI. About ILSI. Available at http://www.ilsi.org/AboutILSI/.
    • About ILSI
  • 21
    • 85069127437 scopus 로고    scopus 로고
    • Available at
    • ILSI HESI. Genomics Committee Status Report 2003. Available at http://www.hesiglobal.org/NR/rdonlyres/8F5B8FD4-B2C6-4DD0-A6D8-F5CBD60D8B13/0/ CommitteeStatusReport.pdf.
    • Genomics Committee Status Report 2003
  • 22
    • 1542331973 scopus 로고    scopus 로고
    • Toxicogenomics in risk assessment: An overview of an HESI collaborative research program
    • Pennie, W., Pettit, S. D., and Lord, P. G. (2004) Toxicogenomics in risk assessment: an overview of an HESI collaborative research program. Environ. Health Perspect. 112, 417-419.
    • (2004) Environ. Health Perspect , vol.112 , pp. 417-419
    • Pennie, W.1    Pettit, S.D.2    Lord, P.G.3
  • 23
    • 12144288618 scopus 로고    scopus 로고
    • Clofibrate-induced gene expression changes in rat liver: A crosslaboratory analysis using membrane cDNA arrays
    • Baker, V. A., Harries, H. M., Waring, J. F., Duggan, C. M., Ni, H. A., Jolly, R. A., et al. (2004) Clofibrate-induced gene expression changes in rat liver: a crosslaboratory analysis using membrane cDNA arrays. Environ. Health Perspect. 112, 428-438.
    • (2004) Environ. Health Perspect , vol.112 , pp. 428-438
    • Baker, V.A.1    Harries, H.M.2    Waring, J.F.3    Duggan, C.M.4    Ni, H.A.5    Jolly, R.A.6
  • 24
    • 1542361727 scopus 로고    scopus 로고
    • Overview of an interlaboratory collaboration on evaluating the effects of model hepatotoxicants on hepatic gene expression
    • Ulrich, R. G., Rockett, J. C., Gibson, G. G., and Pettit, S. D. (2004) Overview of an interlaboratory collaboration on evaluating the effects of model hepatotoxicants on hepatic gene expression. Environ. Health Perspect. 112, 423-427.
    • (2004) Environ. Health Perspect , vol.112 , pp. 423-427
    • Ulrich, R.G.1    Rockett, J.C.2    Gibson, G.G.3    Pettit, S.D.4
  • 26
    • 12144287350 scopus 로고    scopus 로고
    • Overview on the application of transcription profiling using selected nephrotoxicants for toxicology assessment
    • Kramer, J. A., Pettit, S. D., Amin, R. P., Bertram, T. A., Car, B., Cunningham, M., et al. (2004) Overview on the application of transcription profiling using selected nephrotoxicants for toxicology assessment. Environ. Health Perspect. 112, 460-464.
    • (2004) Environ. Health Perspect , vol.112 , pp. 460-464
    • Kramer, J.A.1    Pettit, S.D.2    Amin, R.P.3    Bertram, T.A.4    Car, B.5    Cunningham, M.6
  • 28
    • 25144478254 scopus 로고    scopus 로고
    • Pooling samples within microarray studies: A comparative analysis of rat liver transcription response to prototypical toxicants
    • Jolly, R. A., Goldstein, K. M., Wei, T., Gao, H., Chen, P., Huang, S., et al. (2005) Pooling samples within microarray studies: a comparative analysis of rat liver transcription response to prototypical toxicants. Physiol. Genomics 22, 346-355.
    • (2005) Physiol. Genomics , vol.22 , pp. 346-355
    • Jolly, R.A.1    Goldstein, K.M.2    Wei, T.3    Gao, H.4    Chen, P.5    Huang, S.6
  • 29
  • 31
    • 0036628957 scopus 로고    scopus 로고
    • Methapyrilene toxicity: Anchorage of pathologic observations to gene expression alterations
    • Hamadeh, H. K., Knight, B. L., Haugen, A. C., Sieber, S., Amin, R. P., Bushel, P. R., et al. (2002) Methapyrilene toxicity: anchorage of pathologic observations to gene expression alterations. Toxicol. Pathol. 30, 470-482.
    • (2002) Toxicol. Pathol , vol.30 , pp. 470-482
    • Hamadeh, H.K.1    Knight, B.L.2    Haugen, A.C.3    Sieber, S.4    Amin, R.P.5    Bushel, P.R.6
  • 32
    • 1542331972 scopus 로고    scopus 로고
    • Annotation and cross-indexing of array elements on multiple platforms
    • Mattes, W. B. (2004) Annotation and cross-indexing of array elements on multiple platforms. Environ. Health Perspect. 112, 506-510.
    • (2004) Environ. Health Perspect , vol.112 , pp. 506-510
    • Mattes, W.B.1
  • 33
    • 1542361728 scopus 로고    scopus 로고
    • Quantitative PCR deconstruction of discrepancies between results reported by different hybridization platforms
    • Goodsaid, F. M., Smith, R. J., and Rosenblum, I. Y. (2004) Quantitative PCR deconstruction of discrepancies between results reported by different hybridization platforms. Environ. Health Perspect. 112, 456-460.
    • (2004) Environ. Health Perspect , vol.112 , pp. 456-460
    • Goodsaid, F.M.1    Smith, R.J.2    Rosenblum, I.Y.3
  • 35
    • 0036913263 scopus 로고    scopus 로고
    • Toxicogenomics research consortium sails into uncharted waters
    • Medlin, J. (2002) Toxicogenomics research consortium sails into uncharted waters. Environ. Health Perspect. 110, A744-746.
    • (2002) Environ. Health Perspect , vol.110
    • Medlin, J.1
  • 37
    • 0037396730 scopus 로고    scopus 로고
    • The Gene Ontology Annotation (GOA) project: Implementation of GO in SWISS-PROT, TrEMBL, and InterPro
    • Camon, E., Magrane, M., Barrell, D., Binns, D., Fleischmann, W., Kersey, P., et al. (2003) The Gene Ontology Annotation (GOA) project: implementation of GO in SWISS-PROT, TrEMBL, and InterPro. Genome Res. 13, 662-672.
    • (2003) Genome Res , vol.13 , pp. 662-672
    • Camon, E.1    Magrane, M.2    Barrell, D.3    Binns, D.4    Fleischmann, W.5    Kersey, P.6
  • 38
    • 33748508012 scopus 로고    scopus 로고
    • Evaluation of external RNA controls for the assessment of microarray performance
    • Tong, W., Lucas, A. B., Shippy, R., Fan, X., Fang, H., Hong, H., et al. (2006) Evaluation of external RNA controls for the assessment of microarray performance. Nat. Biotechnol. 24, 1132-1139.
    • (2006) Nat. Biotechnol , vol.24 , pp. 1132-1139
    • Tong, W.1    Lucas, A.B.2    Shippy, R.3    Fan, X.4    Fang, H.5    Hong, H.6
  • 39
    • 33748491517 scopus 로고    scopus 로고
    • The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements
    • Shi, L., Reid, L. H., Jones, W. D., Shippy, R., Warrington, J. A., Baker, S. C., et al. (2006) The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements. Nat. Biotechnol. 24, 1151-1161.
    • (2006) Nat. Biotechnol , vol.24 , pp. 1151-1161
    • Shi, L.1    Reid, L.H.2    Jones, W.D.3    Shippy, R.4    Warrington, J.A.5    Baker, S.C.6
  • 41
    • 33748491718 scopus 로고    scopus 로고
    • Patterson, T. A., Lobenhofer, E. K., Fulmer-Smentek, S. B., Collins, P. J., Chu, T. M., Bao, W., Fet al. (2006) Performance comparison of one-color and two-color platforms within the Microarray Quality Control (MAQC) project. Nat. Biotechnol. 24, 1140-1150.
    • Patterson, T. A., Lobenhofer, E. K., Fulmer-Smentek, S. B., Collins, P. J., Chu, T. M., Bao, W., Fet al. (2006) Performance comparison of one-color and two-color platforms within the Microarray Quality Control (MAQC) project. Nat. Biotechnol. 24, 1140-1150.
  • 42
    • 33748495591 scopus 로고    scopus 로고
    • Rat toxicogenomic study reveals analytical consistency across microarray platforms
    • Guo, L., Lobenhofer, E. K., Wang, C., Shippy, R., Harris, S. C., Zhang, L., et al. (2006) Rat toxicogenomic study reveals analytical consistency across microarray platforms. Nat. Biotechnol. 24, 1162-1169.
    • (2006) Nat. Biotechnol , vol.24 , pp. 1162-1169
    • Guo, L.1    Lobenhofer, E.K.2    Wang, C.3    Shippy, R.4    Harris, S.C.5    Zhang, L.6
  • 43
    • 85069124334 scopus 로고    scopus 로고
    • Available at
    • InnoMed PredTox. Available at http://www.innomed-predtox.com/.
    • InnoMed PredTox
  • 44
    • 85069122162 scopus 로고    scopus 로고
    • FDA. (2006) Critical Path Opportunities Report and List (HHS, ed.). FDA, Bethesda, MD.
    • FDA. (2006) Critical Path Opportunities Report and List (HHS, ed.). FDA, Bethesda, MD.
  • 46
    • 34547881497 scopus 로고    scopus 로고
    • A gene expression biomarker provides early prediction and mechanistic assessment of hepatic tumor induction by nongenotoxic chemicals
    • Fielden, M. R., Brennan, R., and Gollub, J. (2007) A gene expression biomarker provides early prediction and mechanistic assessment of hepatic tumor induction by nongenotoxic chemicals. Toxicol. Sci. 99, 90-100.
    • (2007) Toxicol. Sci , vol.99 , pp. 90-100
    • Fielden, M.R.1    Brennan, R.2    Gollub, J.3
  • 47
    • 33845462135 scopus 로고    scopus 로고
    • Predictive toxicogenomics approaches reveal underlying molecular mechanisms of nongenotoxic carcinogenicity
    • Nie, A. Y., McMillian, M., Parker, J. B., Leone, A., Bryant, S., Yieh, L., et al. (2006) Predictive toxicogenomics approaches reveal underlying molecular mechanisms of nongenotoxic carcinogenicity. Mol. Carcinog. 45, 914-933.
    • (2006) Mol. Carcinog , vol.45 , pp. 914-933
    • Nie, A.Y.1    McMillian, M.2    Parker, J.B.3    Leone, A.4    Bryant, S.5    Yieh, L.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.