DNA detection by cascade enzymatic signal amplification

Methods in Molecular Biology

Volumn 1039, Issue , 2013, Pages 131-137

  Zou, Bingjie ^a   Ma, Yinjiao ^a   Zhou, Guohua ^a  

^a MEDICAL SCHOOL OF NANJING UNIVERSITY   (China)

Author keywords

Afu flap endonuclease; Molecular beacon; Nicking endonuclease; Signal amplification

Indexed keywords

DNA; FLAP ENDONUCLEASE;

ARTICLE; CASCADE ENZYMATIC SIGNAL AMPLIFICATION; CONTAMINATION; CONTROLLED STUDY; DNA SEQUENCE; GENE AMPLIFICATION; MOLECULAR BEACON; PRIORITY JOURNAL;

BIOCATALYSIS; BIOSENSING TECHNIQUES; DEOXYRIBONUCLEASES, TYPE II SITE-SPECIFIC; DNA BREAKS, SINGLE-STRANDED; DNA CLEAVAGE; DNA CONTAMINATION; DNA PROBES; FLAP ENDONUCLEASES; FLUORESCENT DYES; SIGNAL-TO-NOISE RATIO; SPECTROMETRY, FLUORESCENCE;

EID: 84934434616     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-62703-535-4_11     Document Type: Article

References (19)

1. Compton J (1991) Nucleic acid sequencebased amplification. Nature 350:91-92
2. Lizardi PM, Huang X, Zhu Z, Bray-Ward P, Thomas DC, Ward DC (1998) Mutation detection and single-molecule counting using isothermal rolling-circle amplification. Nat Genet 19:225-232
3. Mullis KB, Faloona FA (1987) Specific synthesis of DNA in vitro via a polymerase-catalyzed chain reaction. Methods Enzymol 155: 335-350
4. Notomi T, Okayama H, Masubuchi H, Yonekawa T, Watanabe K, Amino N et al (2000) Loop-mediated isothermal amplification of DNA. Nucleic Acids Res 28:E63
5. Zou B, Ma Y, Wu H, Zhou G (2012) Signal amplification by rolling circle amplification on universal flaps yielded from target-specific invasive reaction. Analyst 137:729-734
6. Schwartz JR, Sarvaiya PJ, Leiva LE, Velez MC, Singleton TC, Yu LC et al (2012) A facile, branched DNA assay to quantitatively measure glucocorticoid receptor auto-regulation in T-cell acute lymphoblastic leukemia. Chin J Cancer 31:381-391
7. Baumeister MA, Zhang N, Beas H, Brooks JR, Canchola JA, Cosenza C et al (2012) A sensitive branched DNA HIV-1 signal amplification viral load assay with single day turnaround. PLoS One 7:e33295
8. Zou B, Ma Y, Wu H, Zhou G (2011) Ultrasensitive DNA detection by cascade enzymatic signal amplification based on Afu flap endonuclease coupled with nicking endonuclease. Angew Chem Int Ed Engl 50:7395-7398
9. Kaiser MW, Lyamicheva N, Ma W, Miller C, Neri B, Fors L et al (1999) A comparison of eubacterial and archaeal structure-specific 5′-exonucleases. J Biol Chem 274: 21387-21394
10. Zhu Z, Samuelson JC, Zhou J, Dore A, Xu SY (2004) Engineering strand-specific DNA nicking enzymes from the type IIS restriction endonucleases BsaI, BsmBI, and BsmAI. J Mol Biol 337:573-583
11. Hall JG, Eis PS, Law SM, Reynaldo LP, Prudent JR, Marshall DJ et al (2000) Sensitive detection of DNA polymorphisms by the serial invasive signal amplification reaction. Proc Natl Acad Sci U S A 97:8272-8277
12. Lyamichev V, Brow MA, Dahlberg JE (1993) Structure-specific endonucleolytic cleavage of nucleic acids by eubacterial DNA polymerases. Science 260:778-783
13. Lyamichev V, Mast AL, Hall JG, Prudent JR, Kaiser MW, Takova T et al (1999) Polymorphism identification and quantitative detection of genomic DNA by invasive cleavage of oligonucleotide probes. Nat Biotechnol 17:292-296
14. Kiesling T, Cox K, Davidson EA, Dretchen K, Grater G, Hibbard S et al (2007) Sequence specific detection of DNA using nicking endonuclease signal amplification (NESA). Nucleic Acids Res 35:e117
15. Li JJ, Chu Y, Lee BY, Xie XS (2008) Enzymatic signal amplification of molecular beacons for sensitive DNA detection. Nucleic Acids Res 36:e36
16. Tang Z, Wang K, Tan W, Li J, Liu L, Guo Q et al (2003) Real-time monitoring of nucleic acid ligation in homogenous solutions using molecular beacons. Nucleic Acids Res 31:e148
17. Allawi HT, SantaLucia J Jr (1997) Thermodynamics and NMR of internal G.T mismatches in DNA. Biochemistry 36: 10581-10594
18. SantaLucia J Jr (1998) A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics. Proc Natl Acad Sci U S A 95:1460-1465
19. Lyamichev VI, Kaiser MW, Lyamicheva NE, Vologodskii AV, Hall JG, Ma WP et al (2000) Experimental and theoretical analysis of the invasive signal amplification reaction. Biochemistry 39:9523-9532