Mespeus-A database of metal interactions with proteins

Methods in Molecular Biology

Volumn 1091, Issue , 2014, Pages 333-342

  Harding, Marjorie M ^a   Hsin, Kun Yi ^b  

^a UNIVERSITY OF EDINBURGH   (United Kingdom)

^b OKINAWA INSTITUTE OF SCIENCE AND TECHNOLOGY GRADUATE UNIVERSITY   (Japan)

Author keywords

Database; Metal; Metal coordination group; Metal site; Metal site geometry; Metalloprotein; Metalloprotein structure

Indexed keywords

CALCIUM; COORDINATION COMPOUND; MAGNESIUM; METAL; POTASSIUM; SODIUM; COPPER; CYSTEINE; HISTIDINE; MANGANESE; METHIONINE; PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; CRYSTAL STRUCTURE; GEOMETRY; METAL PROTEIN INTERACTION; PRIORITY JOURNAL; PROTEIN DATA BANK; PROTEIN DATABASE; PROTEIN FUNCTION; PROTEIN INTERACTION; PROTEIN STRUCTURE; STRUCTURAL GENOMICS; STRUCTURE ANALYSIS; COMPUTER INTERFACE; COMPUTER LANGUAGE; DATA BASE; DATA PROCESSING; SOFTWARE; STRUCTURAL MODEL; WEB BROWSER;

DATABASES, PROTEIN; METALLOPROTEINS; METALS; MODELS, MOLECULAR; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEINS; WEB BROWSER;

EID: 84934434394     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-62703-691-7_23     Document Type: Article

References (8)

1. Hsin K, Sheng Y, Harding MM et al (2008) MESPEUS: a database of the geometry of metal sites in proteins. J Appl Cryst 41:963-968
2. Berman H, Henrick K, Nakamura H et al (2007) The worldwide protein data bank (wwwPDB): ensuring a single, uniform archive of PDB Data. Nucleic Acids Res 35: D301-D303
3. Harding MM (2006) Small revisions to predicted distances around metal sites in proteins. Acta Crystallogr D 62:678-682
4. Harding MM, Nowicki MW, Walkinshaw MD (2010) Metals in protein structures: a review of their principal features. Cryst Rev 16:247-302
5. Hemavathi K, Kalaivani M, Udayakumar A et al (2010) MIPS: metal interactions in protein structures. J Appl Cryst 43:196-199
6. http://jmol.sourceforge.net/(for Jmol).
7. http://www.mysql.com/(for SQL)
8. Harding MM (2004) The architecture of metal coordination groups in proteins. Acta Crystallogr D 60:849-859