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Volumn 7, Issue 4, 2015, Pages 523-526

Breaking TADs: Insights into hierarchical genome organization

Author keywords

chromosome confirmation capture; gene regulation; Hi C; nuclear organization; TADs

Indexed keywords

TRANSCRIPTION FACTOR CTCF;

EID: 84933526418     PISSN: 17501911     EISSN: 1750192X     Source Type: Journal    
DOI: 10.2217/epi.15.25     Document Type: Note
Times cited : (38)

References (20)
  • 1
    • 0035316574 scopus 로고    scopus 로고
    • Chromosome territories, nuclear architecture and gene regulation in mammalian cells
    • Cremer T, Cremer C. Chromosome territories, nuclear architecture and gene regulation in mammalian cells. Nat. Rev. Genet. 2(4), 292-301 (2001).
    • (2001) Nat. Rev. Genet. , vol.2 , Issue.4 , pp. 292-301
    • Cremer, T.1    Cremer, C.2
  • 2
    • 0037083376 scopus 로고    scopus 로고
    • Capturing chromosome conformation
    • Dekker J, Rippe K, Dekker M, Kleckner N. Capturing chromosome conformation. Science 295(5558), 1306-1311 (2002).
    • (2002) Science , vol.295 , Issue.5558 , pp. 1306-1311
    • Dekker, J.1    Rippe, K.2    Dekker, M.3    Kleckner, N.4
  • 3
    • 70349873824 scopus 로고    scopus 로고
    • Comprehensive mapping of long-range interactions reveals folding principles of the human genome
    • Lieberman-Aiden E, Van Berkum NL, Williams L et al. Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science 326(5950), 289-293 (2009).
    • (2009) Science , vol.326 , Issue.5950 , pp. 289-293
    • Lieberman-Aiden, E.1    Van Berkum, N.L.2    Williams, L.3
  • 4
    • 84861100147 scopus 로고    scopus 로고
    • Spatial partitioning of the regulatory landscape of the X-inactivation centre
    • Nora EP, Lajoie BR, Schulz EG et al. Spatial partitioning of the regulatory landscape of the X-inactivation centre. Nature 485(7398), 381-385 (2012).
    • (2012) Nature , vol.485 , Issue.7398 , pp. 381-385
    • Nora, E.P.1    Lajoie, B.R.2    Schulz, E.G.3
  • 5
    • 84861095603 scopus 로고    scopus 로고
    • Topological domains in mammalian genomes identified by analysis of chromatin interactions
    • Dixon JR, Selvaraj S, Yue F et al. Topological domains in mammalian genomes identified by analysis of chromatin interactions. Nature 485(7398), 376-380 (2012).
    • (2012) Nature , vol.485 , Issue.7398 , pp. 376-380
    • Dixon, J.R.1    Selvaraj, S.2    Yue, F.3
  • 6
    • 84856747483 scopus 로고    scopus 로고
    • Three-dimensional folding and functional organization principles of the Drosophila genome
    • Sexton T, Yaffe E, Kenigsberg E et al. Three-dimensional folding and functional organization principles of the Drosophila genome. Cell 148(3), 458-472 (2012).
    • (2012) Cell , vol.148 , Issue.3 , pp. 458-472
    • Sexton, T.1    Yaffe, E.2    Kenigsberg, E.3
  • 7
    • 84927763931 scopus 로고    scopus 로고
    • The pluripotent regulatory circuitry connecting promoters to their long-range interacting elements
    • Schoenfelder S, Furlan-Magaril M, Mifsud B et al. The pluripotent regulatory circuitry connecting promoters to their long-range interacting elements. Genome Res. 25(4), 582-597 (2015).
    • (2015) Genome Res. , vol.25 , Issue.4 , pp. 582-597
    • Schoenfelder, S.1    Furlan-Magaril, M.2    Mifsud, B.3
  • 8
    • 84916880365 scopus 로고    scopus 로고
    • Control of cell identity genes occurs in insulated neighborhoods in mammalian chromosomes
    • Dowen JM, Fan ZP, Hnisz D et al. Control of cell identity genes occurs in insulated neighborhoods in mammalian chromosomes. Cell 159(2), 374-387 (2014).
    • (2014) Cell , vol.159 , Issue.2 , pp. 374-387
    • Dowen, J.M.1    Fan, Z.P.2    Hnisz, D.3
  • 9
    • 84923366733 scopus 로고    scopus 로고
    • Chromatin architecture reorganization during stem cell differentiation
    • Dixon JR, Jung I, Selvaraj S et al. Chromatin architecture reorganization during stem cell differentiation. Nature 518(7539), 331-336 (2015).
    • (2015) Nature , vol.518 , Issue.7539 , pp. 331-336
    • Dixon, J.R.1    Jung, I.2    Selvaraj, S.3
  • 10
    • 84907512608 scopus 로고    scopus 로고
    • Distinct structural transitions of chromatin topological domains correlate with coordinated hormone-induced gene regulation
    • Le Dily F, Bau D, Pohl A et al. Distinct structural transitions of chromatin topological domains correlate with coordinated hormone-induced gene regulation. Genes Dev. 28(19), 2151-2162 (2014).
    • (2014) Genes Dev. , vol.28 , Issue.19 , pp. 2151-2162
    • Le Dily, F.1    Bau, D.2    Pohl, A.3
  • 11
    • 85006305723 scopus 로고    scopus 로고
    • Insulator function and topological domain border strength scale with architectural protein occupancy
    • Van Bortle K, Nichols MH, Li L et al. Insulator function and topological domain border strength scale with architectural protein occupancy. Genome Biol. 15(6), R82 (2014).
    • (2014) Genome Biol. , vol.15 , Issue.6 , pp. R82
    • Van Bortle, K.1    Nichols, M.H.2    Li, L.3
  • 12
    • 84878754528 scopus 로고    scopus 로고
    • A switch between topological domains underlies HoxD genes collinearity in mouse limbs
    • Andrey G, Montavon T, Mascrez B et al. A switch between topological domains underlies HoxD genes collinearity in mouse limbs. Science 340(6137), 1234167 (2013).
    • (2013) Science , vol.340 , Issue.6137 , pp. 1234167
    • Andrey, G.1    Montavon, T.2    Mascrez, B.3
  • 13
    • 84923771297 scopus 로고    scopus 로고
    • Transcription. CTCF establishes discrete functional chromatin domains at the Hox clusters during differentiation
    • Narendra V, Rocha PP, An D et al. Transcription. CTCF establishes discrete functional chromatin domains at the Hox clusters during differentiation. Science 347(6225), 1017-1021 (2015).
    • (2015) Science , vol.347 , Issue.6225 , pp. 1017-1021
    • Narendra, V.1    Rocha, P.P.2    An, D.3
  • 14
    • 84924533047 scopus 로고    scopus 로고
    • Comparative Hi-C reveals that CTCF underlies evolution of chromosomal domain architecture
    • Vietri Rudan M, Barrington C, Henderson S et al. Comparative Hi-C reveals that CTCF underlies evolution of chromosomal domain architecture. Cell Rep. 10(8), 1297-1309 (2015).
    • (2015) Cell Rep. , vol.10 , Issue.8 , pp. 1297-1309
    • Vietri Rudan, M.1    Barrington, C.2    Henderson, S.3
  • 15
    • 84878860751 scopus 로고    scopus 로고
    • Architectural protein subclasses shape 3D organization of genomes during lineage commitment
    • Phillips-Cremins JE, Sauria ME, Sanyal A et al. Architectural protein subclasses shape 3D organization of genomes during lineage commitment. Cell 153(6), 1281-1295 (2013).
    • (2013) Cell , vol.153 , Issue.6 , pp. 1281-1295
    • Phillips-Cremins, J.E.1    Sauria, M.E.2    Sanyal, A.3
  • 16
    • 84919949716 scopus 로고    scopus 로고
    • A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping
    • Rao SS, Huntley MH, Durand NC et al. A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping. Cell 159(7), 1665-1680 (2014).
    • (2014) Cell , vol.159 , Issue.7 , pp. 1665-1680
    • Rao, S.S.1    Huntley, M.H.2    Durand, N.C.3
  • 17
    • 84900297485 scopus 로고    scopus 로고
    • Predictive polymer modeling reveals coupled fluctuations in chromosome conformation and transcription
    • Giorgetti L, Galupa R, Nora EP et al. Predictive polymer modeling reveals coupled fluctuations in chromosome conformation and transcription. Cell 157(4), 950-963 (2014).
    • (2014) Cell , vol.157 , Issue.4 , pp. 950-963
    • Giorgetti, L.1    Galupa, R.2    Nora, E.P.3
  • 18
    • 84927779326 scopus 로고    scopus 로고
    • The Hitchhiker's guide to Hi-C analysis: Practical guidelines
    • Lajoie BR, Dekker J, Kaplan N. The Hitchhiker's guide to Hi-C analysis: practical guidelines. Methods 72, 65-75 (2015).
    • (2015) Methods , vol.72 , pp. 65-75
    • Lajoie, B.R.1    Dekker, J.2    Kaplan, N.3
  • 19
    • 79960980390 scopus 로고    scopus 로고
    • Variegated gene expression caused by cell-specific long-range DNA interactions
    • Noordermeer D, De Wit E, Klous P et al. Variegated gene expression caused by cell-specific long-range DNA interactions. Nat. Cell Biol. 13(8), 944-951 (2011).
    • (2011) Nat. Cell Biol. , vol.13 , Issue.8 , pp. 944-951
    • Noordermeer, D.1    De Wit, E.2    Klous, P.3
  • 20
    • 84881431035 scopus 로고    scopus 로고
    • The RAG2 C-terminus and ATM protect genome integrity by controlling antigen receptor gene cleavage
    • Chaumeil J, Micsinai M, Ntziachristos P et al. The RAG2 C-terminus and ATM protect genome integrity by controlling antigen receptor gene cleavage. Nat. Commun. 4, 2231 (2013).
    • (2013) Nat. Commun. , vol.4 , pp. 2231
    • Chaumeil, J.1    Micsinai, M.2    Ntziachristos, P.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.