Innovations in air sampling to detect plant pathogens

Annals of Applied Biology

Volumn 166, Issue 1, 2015, Pages 4-17

  West, J S ^a   Kimber, R B E ^b  

^a ROTHAMSTED RESEARCH   (United Kingdom)

^b SOUTH AUSTRALIAN RESEARCH AND DEVELOPMENT INSTITUTE   (Australia)

Author keywords

Aerobiology; Cyclone; Diagnostics; GIS; IDM; IPM; UAV; Virtual impactor

Indexed keywords

AEROBIOLOGY; AIR SAMPLING; CYCLONE; DISEASE CONTROL; DISPERSAL; GIS; INNOVATION; INTEGRATED PEST MANAGEMENT; POPULATION STRUCTURE; VOLUME;

EID: 84933034769     PISSN: 00034746     EISSN: 17447348     Source Type: Journal    
DOI: 10.1111/aab.12191     Document Type: Review

References (71)

1. Aizenberg V., Reponen T., Grinshpun S., Willeke K. (2000) Performance of Air-O-Cell, Burkard, and Button samplers for total enumeration of airborne spores. American Industrial Hygiene Association Journal, 61, 855-864.
2. Andersen A.A. (1958) New sampler for the collection, sizing and enumeration of viable airborne particles. Journal of Bacteriology, 76, 471-484.
3. Anderson K., Gaston K.J. (2013) Lightweight unmanned aerial vehicles will revolutionise spatial ecology. Frontiers in Ecology and the Environment, 11, 138-146.
4. Anderson G.P., King KD., Cuttino D.S., Whelan J.P., Ligler F.S., MacKrell J.F., Bovais CS., Indyke D.K., Foch R.J. (1999) Biological agent detection with the use of an airborne biosensor. Field Analytical Chemistry and Technology, 3, 307-314.
5. Aylor D., Schmale D., Shields E., Newcomb M., Nappo C. (2011) Tracking potato blight pathogen in the atmosphere using unmanned aerial vehicles and Lagrangian modelling. Agricultural and Forest Meteorology, 151, 251-260.
6. Aylor E.D., Boehm M.T., Shields E.J. (2006) Quantifying aerial concentrations of maize pollen in the atmospheric surface layer using remote-piloted airplanes and Lagrangian stochastic modeling. Agricultural and Forest Meteorology, 45, 1003-1015.
7. Barnes C.W., Szabo L.J., Johnson J.L., Nguyen K.P., Floyd CM., Kurle J.E. (2006) Detection of Phakopsora pachyrhizi DNA in rain using qPCR and a portable rain collector. Phytopathology, 96, S9.
8. Brown H.M. (1991) Mobile slit sampler for pollen and spore sampling on motorways. Aerobiologia, 7, 69-72.
9. Brown H.M., Jackson F.A. (1978) Aerobiological studies based in Derby. Clinical & Experimental Allergy, 8, 589-597.
10. Hardin P.J., Jensen R.R. (2011) Small-scale unmanned aerial vehicles in environmental remote sensing: challenges and opportunities. GIScience & Remote Sensing, 48, 99-111.
11. Bock C.H., Cotty P.J. (2003) Devices to sample airborne propagules of Aspergillus flavus in the desert regions of southwest Arizona. Phytopathology, 93, S9-S10.
12. Brown J.K.M., Hovmøller M.S. (2002) Aerial dispersal of pathogens on the global and continental scales and its impact on plant disease. Science, 297, 537-541.
13. Buters J.T.M., Thibaudon M., Smith M., Kennedy R., Rantio-Lehtimäki A., Albertini R., Reese G., Weber B., Galan C., Brandao R., Antunes C., Jäger S., Berger U, Celenk S., Grewling Ł., Jackowiak B., Sauliene I., Weichenmeier I., Pusch G., Sarioglu H., Ueffing M., Behrendt H., Prank M., Sofiev M., Cecchi L. (2012) Release of Bet v 1 from birch pollen from 5 European countries. Results from the HIALINE study. Atmospheric Environment, 55, 496-505.
14. Calderon C., Ward E., Freeman J., McCartney H.A. (2002) Detection of airborne fungal spores sampled by rotating-arm and Hirst-type spore traps using polymerase chain reaction assays. Journal of Aerosol Science, 33, 283-296.
15. Carisse O., Savary S., Willocquet L. (2008) Spatiotemporal relationships between disease development and airborne inoculum in unmanaged and managed botrytis leaf blight epidemics. Phytopathology, 98, 38-44.
16. Carisse O., Tremblay D.M., Lévesque C.A., Gindro K., Ward P., Houde A. (2009a) Development of a TaqMan real-time PCR assay for quantification of airborne conidia of Botrytis squamosa and management of botrytis leaf blight of onion. Phytopathology, 99, 1273-1280.
17. Carisse O., Bacon R., Lefebvre A. (2009b) Grape powdery mildew (Erysiphe necator) risk assessment based on airborne conidium concentration. Crop Protection, 28, 1036-1044.
18. Carisse O., Levasseur A., Van der Heyden H. (2012) A new risk indicator for botrytis leaf blight of onion caused by Botrytis squamosa based on infection efficiency of airborne inoculum. Plant Pathology, 61, 1154-1164.
19. Carvalho E., Sindt C., Verdier A., Galan C., O'Donoghue L., Parks S., Thibaudon M. (2008) Performance of the Coriolis air sampler, a high-volume aerosol-collection system for quantification of airborne spores and pollen grains. Aerobiologia, 24, 191-201.
20. Chen B.T., Feather G.A., Maynard A., Rao C.Y. (2004) Development of a personal sampler for collecting fungal spores. Aerosol Science and Technology, 38, 926-937.
21. Cox C.S., Wathes C.M. (Eds) (1995) Bioaerosols Handbook. Boca Raton, FL, USA: CRC Press 623 pp.
22. Day J.P., Kell D.B., Griffith G.W. (2002) Differentiation of Phytophthora infestans sporangia from other airborne biological particles by flow Cytometry. Applied and Environmental Microbiology, 68, 37-45.
23. Fraaije B.A., Cools H.J., Fountaine J., Lovell D.J., Motteram J., West J.S., Lucas J.A. (2005) Role of ascospores in further spread of QoI-resistant cytochrome b alleles (G143A) in field populations of Mycosphaerella graminicola. Phytopathology, 95, 933-941.
24. Gabey A.M., Vaitilingom M., Freney E., Boulon J., Sellegri K., Gallagher M.W., Crawford I.P., Robinson N.H., Stanley W.R., Kaye P.H. (2013) Observations of fluorescent and biological aerosol at a high-altitude site in central France. Atmospheric Chemistry and Physics, 13, 7415-7428.
25. Gonzalez F., Castro M.P.G., Narayan P., Walker R., Zeller L. (2011) Development of an autonomous unmanned aerial system to collect time-stamped samples from the atmosphere and localize potential pathogen sources. Journal of Field Robotics, 28, 961-976.
26. González-Parrado Z., Fernández-González D., Camazón B., Valencia-Barrera R.M., Vega-Maray A.M., Asturias J.A., Monsalve R.I., Mandrioli P. (2014) Molecular aerobiology - Plantago allergen Pla l 1 in the atmosphere. Annals of Agricultural and Environmental Medicine, 21, 282-289.
27. Görner P., Fabriès J.-F., Duquenne P., Witschger O., Wrobel R. (2005) Bioaerosol sampling by a personal rotating cup sampler CIP 10-M. Journal of Environmental Monitoring, 8, 43-48.
28. Gottwald T.R., Sun X., Riley T., Graham J.H., Ferrandino F., Taylor E.L. (2002) Geo-referenced spatiotemporal analysis of the urban citrus canker epidemic in Florida. Phytopathology, 92, 361-377.
29. Gottwald T.R., Tedders W.L. (1985) A spore and pollen trap for use on aerial remotely piloted vehicles. Phytopathology, 75, 801-807.
30. Gregory P.H. (1952) Spore content of the atmosphere near the ground. Nature, 170, 475-477.
31. Gregory P.H. (1973) The Microbiology of the Atmosphere. 2nd edn. Aylesbury, UK: Leonard Hill 377 pp.
32. Heard S., West J.S. (2014) New developments in identification and quantification of airborne inoculum. In Detection and Diagnostics of Plant Pathogens, Plant Pathology in the 21st Century. Volume 5, pp. 3-19. Eds M.L. Gullino and P.J.M. Bonants. Dordrecht, The Netherlands: Springer.
33. Hirst J.M. (1952) An automatic volumetric spore trap. Annals of Applied Biology, 39, 259-265.
34. Hirst J.M. (1995) Bioaerosols: introduction, retrospect and prospect. In Bioaerosols Handbook. Eds C.S. Cox and C.M. Wathes. Boca Raton, FL, USA: CRC Press 623 pp.
35. Jackson S.L., Bayliss K.L. (2011) Spore traps need improvement to fulfil plant biosecurity requirements. Plant Pathology, 60, 801-810.
36. Kaczmarek J., Latunde-Dada A.O., Irzykowski W., Cools H.J., Stonard J.F., Brachaczek A., Jedryczka M. (2014) Molecular screening for avirulence alleles AvrLm1 and AvrLm6 in airborne inoculum of Leptosphaeria maculans and winter oilseed rape (Brassica napus) plants from Poland and the UK. Journal of Applied Genetics, 55, 529-539.
37. Kalatoor S., Grinshpun S., Willeke K. (1995) A new aerosol sampler with low wind sensitivity and good filter collection uniformity. Atmospheric Environment, 29, 1105-1112.
38. Kaye P.H., Stanley W.R., Hirst E., Foot E.V., Baxter K.L., Barrington S.J. (2005) Single particle multichannel bio-aerosol fluorescence sensor. Optics Express, 13, 3583-3593.
39. Kennedy R., Wakeham A.J. (2008) Development and use of detection systems for the sporangia of Peronospora destructor. Aspects of Applied Biology 89, Applied Aspects of Aerobiology, pp. 55-56. The Association of Applied Biologists, Wellesbourne, UK.
40. Kennedy R., Wakeham A.J., Byrne K.G., Meyer U.M., Dewey F.M. (2000) A new method to monitor airborne inoculum of the fungal plant pathogens Mycosphaerella brassicicola and Botrytis cinerea. Applied and Environmental Microbiology, 66, 2996-3003.
41. Khattab A., Levetin E. (2008) Effect of sampling height on the concentration of airborne fungal spores. Annals of Allergy, Asthma and Immunology, 101, 529-534.
42. King C. (2014) Next Generation of an Early Warning System for Disease. Top Crop Manager, February 2014, 86-89.
43. Lacey J., Venette J. (1995) Outdoor air sampling techniques. In Bioaerosols Handbook, pp. 402-469. Eds C.S. Cox and C.M. Wathes. Boca Raton, FL, USA: Lewis Publishers/CRC Press.
44. Lacey M.E., West J.S. (2006) The Air Spora. Dordrecht, The Netherlands: Springer 156 pp.
45. Limpert E., Godet F., Müller K. (1999) Dispersal of cereal mildews across Europe. Agricultural and Forest Meteorology, 97, 293-308.
46. Lin B.B., Bozorgmagham A., Ross S.D., Schmale D.G. (2013) Small fluctuations in the recovery of fusaria across consecutive sampling intervals with unmanned aircraft 100 m above ground level. Aerobiologia, 29, 45-54.
47. Lindsley W.G., Schmechel D., Chen B.T. (2006) A two-stage cyclone using microcentrifuge tubes for personal bioaerosol sampling. Journal of Environmental Monitoring, 8, 1136-1142.
48. Mahaffee W.F. (2014) Use of airborne inoculum detection for disease management decisions. In Detection and Diagnosis of Plant Pathogens, Plant Pathology in the 21st Century. Volume 5, pp. 39-54. Eds M.L. Gullino and P.J.M. Bonants. Dordrecht, the Netherlands: Springer.
49. May K.R. (1966) Multistage liquid impinger. Bacteriological Reviews, 30, 559-570.
50. Morris C.E., Sands D.C., Glaux C., Samsatly J., Asaad S., Moukahel A.R., Gonçalves F.L.T., Bigg E.K. (2013) Ure-diospores of rust fungi are ice nucleation active at > -10°C and harbor ice nucleation active bacteria. Atmospheric Chemistry and Physics, 13, 4223-4233.
51. Narayan P., Gonzalez F., Zeller L., Walker R. (2010) Final Report - Flying Spore Traps Project CRC30032 (with Ground Vehicle Test Results). ACT, Australia: CRC for National Plant Biosecurity.
52. Nieguitsila A., Arne P., Durand B., Deville M., Benoit-Valiergue H., Chermette R., Cottenot-Latouche S., Guillot J. (2011) Relative efficiencies of two air sampling methods and three culture conditions for the assessment of airborne culturable fungi in a poultry farmhouse in France. Environmental Research, 111, 248-253.
53. Noh Y.M., Müller D., Lee H., Choi T.J. (2013) Influence of biogenic pollen on optical properties of atmospheric aerosols observed by lidar over Gwangju, South Korea. Atmospheric Environment, 69, 139-147.
54. Pady S.M., Kapica L. (1955) Fungi in air over the Atlantic Ocean. Mycologia, 47, 34-50.
55. Pashley C.H., Fairs A., Free R.C., Wardlaw A.J. (2012) DNA analysis of outdoor air reveals a high degree of fungal diversity, temporal variability, and genera not seen by spore morphology. Fungal Biology, 116, 214-224.
56. Perryman S.A.M., Clark S.J., West J.S. (2014) Splash dispersal of Phyllosticta citricarpa conidia from infected citrus fruit. Scientific Reports, 4, 6568.
57. Rosati J.A., Drake-Richman Z. (2009) Evaluation of bioaerosol sampler efficiency. Abs. 1210 in American Association for Aerosol Research, 28th Annual Conference.
58. Rubow K.L., Marple V.A., Olin J.G., McCawley M.A. (1987) A personal cascade impactor: design, evaluation and calibration. American Industrial Hygiene Association Journal, 48, 532-538.
59. Savage D., Barbetti M., MacLeod W., Salam M., Renton M. (2012) Mobile traps are better than stationary traps for surveillance of airborne fungal spores. Crop Protection, 36, 23-30.
60. Schmale D.G., Dingus B.R., Reinholtz C. (2008) Development and application of an autonomous unmanned aerial vehicle for precise aerobiological sampling above agricultural fields. Journal of Field Robotics, 25, 133-147.
61. Schmale D.G., III, Ross S.D., Fetters T.L., Tallapragada P., Wood-Jones A.K., Dingus B. (2012) Isolates of Fusarium graminearum collected 40-320 meters above ground level cause Fusarium head blight in wheat and produce trichothecene mycotoxins. Aerobiologia, 28, 1-11.
62. Schneider R.W., Durr E., Giles C.G. (2007) A new spore trap that utilizes electrostatic deposition and scanning electron microscopy. Phytopathology, 97, S105-S105.
63. Shelton M.J., Evans S.P., Smith P.D., Simpson I.A., Kaye P.H., Clarke J.M. (2004) Real-time biological agent detection using particle size, shape and fluorescence characterisation. SPIE Proceedings 5617, Optically Based Biological and Chemical Sensing for Defence, 284-291.
64. Shiller J.B., Lebas B.S.M., Horner M., Pearson M.N., Clover G.R.G. (2010) Sensitive detection of viruses in pollen using conventional and real-time reverse transcription-polymerase chain reaction. Journal of Phytopathology, 158, 758-763.
65. Techy L., Schmale D.G., Woolsey C.A. (2010) Coordinated aerobiological sampling of a plant pathogen in the lower atmosphere using two autonomous unmanned aerial vehicles. Journal of Field Robotics, 27, 335-343.
66. Van der Heyden H., Lefebvre M., Roberge L., Brodeur L., Carisse O. (2013) Spatial pattern of strawberry powdery mildew (Podosphaera aphanis) and airborne inoculum. Plant Disease, 98, 43-54.
67. von Qualen R., Yang X.B. (2006) Spore traps help researchers watch for soybean rust. Integrated Crop Management, 496, 41-42. http://www.ipm.iastate.edu/ipm/icm/2006/6-19/spore.html.
68. West J.S., Atkins S.D., McCartney A., Fitt B.D.L. (2008) Detecting airborne inoculum to forecast arable crop diseases. Aspects of Applied Biology 89, Applied Aspects of Aerobiology, pp. 1-6. The Association of Applied Biologists, Wellesbourne, UK.
69. West J.S. (2012) Aerobiology and air sampling in plant pathology. Alergologia Immunologia, 9, 80-81.
70. West J.S., Canning G.G.M., Heard S., Wili S.G. (2013) Development of the miniature virtual impactor - MVI - for long-term and automated air sampling to detect plant pathogen spores. Proceedings of "Future IPM in Europe", 19-21 March 2013, Riva del Garda, Italy. (Abstract).
71. Willeke K., Lin X., Grinshpun S.A. (1998) Improved aerosol collection by combined impaction and centrifugal motion. Aerosol Science and Technology, 28, 439-456.