Genome-wide analysis using ChIP to identify isoform-specific gene targets

Journal of Visualized Experiments

Volumn , Issue 41, 2010, Pages

  Beshiri, Michael L ^a   Islam, Abul ^b   DeWaal, Dannielle C ^a   Richter, William F ^a   Love, Jennifer ^c   Lopez Bigas, Nuria ^b   Benevolenskaya, Elizaveta V ^a  

^a UNIVERSITY OF ILLINOIS AT CHICAGO   (United States)

^b UNIVERSITAT POMPEU FABRA   (Spain)

^c WHITEHEAD INSTITUTE FOR BIOMEDICAL RESEARCH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CELLULAR RETINOL BINDING PROTEIN; RBP2 PROTEIN, HUMAN;

ARTICLE; CELL STRAIN U937; CHROMATIN IMMUNOPRECIPITATION; GENETICS; HUMAN; HUMAN GENOME; METHODOLOGY; PROTEIN TERTIARY STRUCTURE;

CHROMATIN IMMUNOPRECIPITATION; GENETICS; GENOME, HUMAN; HUMANS; METHODS; PROTEIN STRUCTURE, TERTIARY; RETINOL-BINDING PROTEINS, CELLULAR; U937 CELLS;

EID: 84932611987     PISSN: 1940087X     EISSN: None     Source Type: Journal    
DOI: 10.3791/2101     Document Type: Article

References (6)

1. Wang, G. G. et al., Haematopoietic malignancies caused by dysregulation of a chromatin-binding PHD finger. Nature 459 (7248), 847 (2009).
2. Benevolenskaya, E. V. et al., Binding of pRB to the PHD protein RBP2 promotes cellular differentiation. Mol Cell 18 (6), 623 (2005).
3. Lopez-Bigas, N. et al., Genome-wide analysis of the H3K4 histone demethylase RBP2 reveals a transcriptional program controlling differentiation. Mol Cell 31 (4), 520 (2008).
4. Benevolenskaya, E. V., Histone H3K4 demethylases are essential in development and differentiation. Biochem Cell Biol 85 (4), 435 (2007).
5. Odom, D. T. et al., Control of pancreas and liver gene expression by HNF transcription factors. Science 303 (5662), 1378 (2004).
6. Guenther, M. G. et al., Aberrant chromatin at genes encoding stem cell regulators in human mixed-lineage leukemia. Genes Dev 22 (24), 3403 (2008).