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Volumn 31, Issue 12, 2015, Pages 1913-1919

Starcode: Sequence clustering based on all-pairs search

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; BIOLOGY; CLUSTER ANALYSIS; COMPUTER PROGRAM; DNA SEQUENCE; HIGH THROUGHPUT SEQUENCING; HUMAN; PROCEDURES;

EID: 84931084134     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btv053     Document Type: Article
Times cited : (130)

References (18)
  • 1
    • 84882737017 scopus 로고    scopus 로고
    • Chromatin position effects assayed by thousands of reporters integrated in parallel
    • Akhtar, W. et al. (2013). Chromatin position effects assayed by thousands of reporters integrated in parallel. Cell, 154, 914-927
    • (2013) Cell , Issue.154 , pp. 914-927
    • Akhtar, W.1
  • 2
    • 80052722558 scopus 로고    scopus 로고
    • SEED: Efficient clustering of next-generation sequences
    • Bao, E. et al. (2011). SEED: efficient clustering of next-generation sequences. Bioinformatics, 27, 2502-2509
    • (2011) Bioinformatics , Issue.27 , pp. 2502-2509
    • Bao, E.1
  • 3
    • 84868032347 scopus 로고    scopus 로고
    • Rainbow: An integrated tool for efficient clustering and assembling RAD-seq reads
    • Chong, Z. et al. (2012). Rainbow: an integrated tool for efficient clustering and assembling RAD-seq reads. Bioinformatics, 28, 2732-2737
    • (2012) Bioinformatics , Issue.28 , pp. 2732-2737
    • Chong, Z.1
  • 4
    • 84873521914 scopus 로고    scopus 로고
    • RRM-RNA recognition: NMR or crystallography and new findings
    • Daubner, G.M. et al. (2013). RRM-RNA recognition: NMR or crystallography and new findings. Curr. Opin. Struct. Biol., 23, 100-108
    • (2013) Curr. Opin. Struct. Biol , Issue.23 , pp. 100-108
    • Daubner, G.M.1
  • 5
    • 52649157765 scopus 로고    scopus 로고
    • Substantial biases in ultra-short read data sets from high-throughput DNA sequencing
    • Dohm, J.C. et al. (2008). Substantial biases in ultra-short read data sets from high-throughput DNA sequencing. Nucleic Acids Res., 36, e105
    • (2008) Nucleic Acids Res , vol.36 , pp. e105
    • Dohm, J.C.1
  • 6
    • 58149234737 scopus 로고    scopus 로고
    • Real-time DNA sequencing from single polymerase molecules
    • Eid, J. et al. (2009). Real-time DNA sequencing from single polymerase molecules. Science, 323, 133-138
    • (2009) Science , vol.323 , pp. 133-138
    • Eid, J.1
  • 7
    • 84870431038 scopus 로고    scopus 로고
    • CD-HIT: Accelerated for clustering the next-generation sequencing data
    • Fu, L. et al. (2012). CD-HIT: accelerated for clustering the next-generation sequencing data. Bioinformatics, 28, 3150-3152
    • (2012) Bioinformatics , Issue.28 , pp. 3150-3152
    • Fu, L.1
  • 9
    • 24044455869 scopus 로고    scopus 로고
    • Genome sequencing in microfabricated high-density picolitre reactors
    • Margulies, M. et al. (2005). Genome sequencing in microfabricated high-density picolitre reactors. Nature, 437, 376-380
    • (2005) Nature , vol.437 , pp. 376-380
    • Margulies, M.1
  • 10
    • 80052226692 scopus 로고    scopus 로고
    • Sequence-specific error profile of Illumina sequencers
    • Nakamura, K. et al. (2011). Sequence-specific error profile of Illumina sequencers. Nucleic Acids Res., 39, e90
    • (2011) Nucleic Acids Res , Issue.39 , pp. e90
    • Nakamura, K.1
  • 11
    • 0014757386 scopus 로고
    • A general method applicable to the search for similarities in the amino acid sequence of two proteins
    • Needleman, S.B. and Wunsch, C.D. (1970). A general method applicable to the search for similarities in the amino acid sequence of two proteins. J. Mol. Biol., 48, 443-453
    • (1970) J. Mol. Biol , vol.48 , pp. 443-453
    • Needleman, S.B.1    Wunsch, C.D.2
  • 12
    • 84876839218 scopus 로고    scopus 로고
    • Genome-wide analysis reveals SR protein cooperation and competition in regulated splicing
    • Pandit, S. et al. (2013). Genome-wide analysis reveals SR protein cooperation and competition in regulated splicing. Mol. Cell, 50, 223-235
    • (2013) Mol. Cell , Issue.50 , pp. 223-235
    • Pandit, S.1
  • 13
    • 67650484984 scopus 로고    scopus 로고
    • Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins.Nat
    • Ray, D. et al. (2009). Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins.Nat. Biotechnol., 27, 667-670
    • (2009) Biotechnol , vol.27 , pp. 667-670
    • Ray, D.1
  • 14
    • 53349143662 scopus 로고    scopus 로고
    • Dissecting T cell lineage relationships by cellular barcoding
    • Schepers, K. et al. (2008). Dissecting T cell lineage relationships by cellular barcoding. J. Exp. Med., 205, 2309-2318
    • (2008) J. Exp. Med , vol.205 , pp. 2309-2318
    • Schepers, K.1
  • 15
    • 79951520746 scopus 로고    scopus 로고
    • SlideSort: All pairs similarity search for short reads
    • Shimizu, K. and Tsuda, K. (2011). SlideSort: all pairs similarity search for short reads. Bioinformatics, 27, 464-470
    • (2011) Bioinformatics , Issue.27 , pp. 464-470
    • Shimizu, K.1    Tsuda, K.2
  • 16
    • 0033382706 scopus 로고    scopus 로고
    • DNA uptake signal sequences in naturally transformable bacteria
    • Smith, H.O. et al. (1999). DNA uptake signal sequences in naturally transformable bacteria. Res. Microbiol., 150, 603-616
    • (1999) Res. Microbiol , vol.150 , pp. 603-616
    • Smith, H.O.1
  • 17
    • 0001704377 scopus 로고
    • On-line construction of suffix trees
    • Ukkonen, E. (1995). On-line construction of suffix trees. Algorithmica, 14, 249-260
    • (1995) Algorithmica , vol.14 , pp. 249-260
    • Ukkonen, E.1
  • 18
    • 84976654685 scopus 로고
    • Fast text searching: Allowing errors
    • Wu, S. and Manber, U. (1992). Fast text searching: allowing errors. Commun. ACM, 35, 83-91
    • (1992) Commun ACM , vol.35 , pp. 83-91
    • Wu, S.1    Manber, U.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.