Correlation between either Cupriavidus or Porphyromonas and primary pulmonary tuberculosis found by analysing the microbiota in patients' bronchoalveolar lavage fluid

PLoS ONE

Volumn 10, Issue 5, 2015, Pages

  Zhou, Yuhua ^a   Lin, Feishen ^b   Cui, Zelin ^a   Zhang, Xiangrong ^b   Hu, Chunmei ^b   Shen, Tian ^a   Chen, Chunyan ^a   Zhang, Xia ^b   Guo, Xiaokui ^a  

^a SHANGHAI JIAO TONG UNIVERSITY SCHOOL OF MEDICINE   (China)

^b NANJING CHEST HOSPITAL   (China)

Author keywords

[No Author keywords available]

Indexed keywords

DNA 16S; ETHAMBUTOL PLUS ISONIAZID PLUS PYRAZINAMIDE PLUS RIFAMPICIN; BACTERIAL DNA;

ADULT; AMPLICON; ARTICLE; BACTERIAL GENE; BACTERIUM DETECTION; BACTERIUM IDENTIFICATION; CLINICAL ARTICLE; CONTROLLED STUDY; CUPRIAVIDUS; FEMALE; FIBEROPTIC BRONCHOSCOPY; HUMAN; LOWER RESPIRATORY TRACT; LUNG LAVAGE; LUNG TUBERCULOSIS; MALE; MICROFLORA; MYCOBACTERIUM; NONHUMAN; PHYLOGENY; POLYMERASE CHAIN REACTION; POPULATION ABUNDANCE; PORPHYROMONAS; PROMOTER REGION; PYROSEQUENCING; THORAX RADIOGRAPHY; ADOLESCENT; BRONCHOALVEOLAR LAVAGE FLUID; GENETICS; ISOLATION AND PURIFICATION; MICROBIOLOGY; MIDDLE AGED; PATHOGENICITY; PHYSIOLOGY; YOUNG ADULT;

BACTERIA (MICROORGANISMS); CORYNEBACTERINEAE; CUPRIAVIDUS; PORPHYROMONAS; STREPTOCOCCUS;

ADOLESCENT; ADULT; BRONCHOALVEOLAR LAVAGE FLUID; CUPRIAVIDUS; DNA, BACTERIAL; FEMALE; HUMANS; MALE; MICROBIOTA; MIDDLE AGED; PORPHYROMONAS; TUBERCULOSIS, PULMONARY; YOUNG ADULT;

EID: 84930645999     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0124194     Document Type: Article

References (28)

1. Sato K, Nagai H, Kurashima A, Mori M, Katayama T. The present situation, treatment and prognosis of drug-resistant pulmonary tuberculosis. Cooperative Study Unit of Chemotherapy of Tuberculosis of the National Sanitoria in Japan. Kekkaku. 1995: 70: 585-589. PMID: 8523851
2. Kanazawa M, Fujita A, Toyoda T, Takasugi T, Osumi M, Nishio K, et al. Clinical presentation of pulmonary tuberculosis associated with acquired immunodeficiency syndrome in metropolitan Tokyo. Intern Med. 1996: 35: 946-952. PMID: 9030992
3. Tattevin P, Casalino E, Fleury L, Egmann G, Ruel M, Bouvet E. The validity of medical history, classic symptoms, and chest radiographs in predicting pulmonary tuberculosis: derivation of a pulmonary tuberculosis prediction model. Chest. 1999: 115: 1248-1253. PMID: 10334135
4. Yam WC, Siu KH. Rapid identification of mycobacteria and rapid detection of drug resistance in Mycobacterium tuberculosis in cultured isolates and in respiratory specimens. Methods Mol Biol. 2013: 943: 171-199. doi: 10.1007/978-1-60327-353-4-12 PMID: 23104290
5. Houben EN, Walburger A, Ferrari G, Nguyen L, Thompson CJ, Miess C, et al. Differential expression of a virulence factor in pathogenic and non-pathogenic mycobacteria. Mol Microbiol. 2009: 72: 41-52. doi: 10.1111/j.1365-2958.2009.06612.x PMID: 19210624
6. Young D, Stark J, Kirschner D. Systems biology of persistent infection: tuberculosis as a case study. Nat Rev Microbiol. 2008: 6: 520-528. doi: 10.1038/nrmicro1919 PMID: 18536727
7. Robinson CJ, Bohannan BJ, Young VB. From structure to function: the ecology of host-associated microbial communities. Microbiol Mol Biol Rev. 2010: 74: 453-476. doi: 10.1128/MMBR.00014-10 PMID: 20805407
8. Blaser MJ, Falkow S. What are the consequences of the disappearing human microbiota? Nat Rev Microbiol. 2009: 7: 887-894. doi: 10.1038/nrmicro2245 PMID: 19898491
9. Armougom F, Bittar F, Stremler N, Rolain JM, Robert C, Dubus JC, et al. Microbial diversity in the sputum of a cystic fibrosis patient studied with 16S rDNA pyrosequencing. Eur J Clin Microbiol Infect Dis. 2009: 28: 1151-1154. doi: 10.1007/s10096-009-0749-x PMID: 19449045
10. Nelson DE, Van Der Pol B, Dong Q, Revanna KV, Fan B, Easwaran S, et al. Characteristic male urine microbiomes associate with asymptomatic sexually transmitted infection. PLoS One. 2010: 5: e14116. doi: 10.1371/journal.pone.0014116 PMID: 21124791
11. Wen L, Ley RE, Volchkov PY, Stranges PB, Avanesyan L, Stonebraker AC, et al. Innate immunity and intestinal microbiota in the development of Type 1 diabetes. Nature. 2008: 455: 1109-1113. doi: 10.1038/nature07336 PMID: 18806780
12. Zhou Y, Lin P, Li Q, Han L, Zheng H, Wei Y, et al. Analysis of the microbiota of sputum samples from patients with lower respiratory tract infections. Acta Biochim Biophys Sin (Shanghai). 2010: 42: 754-761. doi: 10.1093/abbs/gmq081 PMID: 20823075
13. Chen C, Shen T, Tian F, Lin P, Li Q, Cui Z, et al. New microbiota found in sputum from patients with community-acquired pneumonia. Acta Biochim Biophys Sin (Shanghai). 2013: 45: 1039-1048. doi: 10.1093/abbs/gmt116 PMID: 24140650
14. Mimoz O, Dahyot-Fizelier C. Mini-broncho-alveolar lavage: a simple and promising method for assessment of antibiotic concentration in epithelial lining fluid. Intensive Care Med. 2007: 33: 1495-1497. PMID: 17594075
15. Goldberg AE, Malhotra AK, Riaz OJ, Aboutanos MB, Duane TM, Borchers CT, et al. Predictive value of broncho-alveolar lavage fluid Gram's stain in the diagnosis of ventilator-associated pneumonia: a prospective study. J Trauma. 2008: 65: 871-876; discussion 876-878. doi: 10.1097/TA.0b013e31818481e0 PMID: 18849805
16. Price LB, Liu CM, Melendez JH, Frankel YM, Engelthaler D, Aziz M, et al. Community analysis of chronic wound bacteria using 16S rRNA gene-based pyrosequencing: impact of diabetes and antibiotics on chronic wound microbiota. PLoS One. 2009: 4: e6462. doi: 10.1371/journal.pone.0006462 PMID: 19649281
17. Krimsky WS, Broussard JN, Sarkar SA, Harley DP. Bronchoscopic spray cryotherapy: assessment of safety and depth of airway injury. J Thorac Cardiovasc Surg. 2010: 139: 781-782. doi: 10.1016/j.jtcvs.2009.03.051 PMID: 19664781
18. Lee JH, Chung HS. Bronchoscopic, radiologic and pulmonary function evaluation of endobronchial tuberculosis. Respirology. 2000: 5: 411-417. PMID: 11192556
19. Xue Q, Wang N, Xue X, Wang J. Endobronchial tuberculosis: an overview. Eur J Clin Microbiol Infect Dis. 2011: 30: 1039-1044. doi: 10.1007/s10096-011-1205-2 PMID: 21499709
20. Jeannin L. Pulmonary tuberculosis and primary-infection tuberculosis. Epidemiology, diagnosis, course, treatment, prevention. Rev Prat. 1997: 47: 97-106. PMID: 9035551
21. Cole JR, Wang Q, Cardenas E, Fish J, Chai B, Farris RJ, et al. The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res. 2009: 37: D141-145. doi: 10.1093/nar/gkn879 PMID: 19004872
22. Hamady M, Lozupone C, Knight R. Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data. ISME J. 2010: 4: 17-27. doi: 10.1038/ismej.2009.97 PMID: 19710709
23. Charlson ES, Bittinger K, Haas AR, Fitzgerald AS, Frank I, Yadav A, et al. Topographical continuity of bacterial populations in the healthy human respiratory tract. Am J Respir Crit Care Med. 2011: 184: 957-963. doi: 10.1164/rccm.201104-0655OC PMID: 21680950
24. Cruz Rde C, De Albuquerque Mde F, Campelo AR, Costa e Silva EJ, Mazza E, Menezes RC, et al. Pulmonary tuberculosis: association between extent of the residual pulmonary lesion and alteration in the lung function. Rev Assoc Med Bras. 2008: 54: 406-410. PMID: 18989560
25. Cui Z, Zhou Y, Li H, Zhang Y, Zhang S, Tang S, et al. Complex sputum microbial composition in patients with pulmonary tuberculosis. BMC Microbiol. 2012: 12: 276. doi: 10.1186/1471-2180-12-276 PMID: 23176186
26. Kalka-Moll WM, LiPuma JJ, Accurso FJ, Plum G, van Koningsbruggen S, Vandamme P. Airway infection with a novel Cupriavidus species in persons with cystic fibrosis. J Clin Microbiol. 2009: 47: 3026-3028. doi: 10.1128/JCM.00846-09 PMID: 19605576
27. Christensen JB, Vitko NP, Voskuil MI, Castillo-Mancilla JR. Implantable cardiac defibrillator pocket infection due to a previously undescribed Cupriavidus species. J Clin Microbiol. 2010: 48: 2623-2625. doi: 10.1128/JCM.00507-10 PMID: 20427695
28. Langevin S, Vincelette J, Bekal S, Gaudreau C. First case of invasive human infection caused by Cupriavidus metallidurans. J Clin Microbiol. 2011: 49: 744-745. doi: 10.1128/JCM.01947-10 PMID: 21106795