Remodeling of secretory compartments creates CUPS during nutrient starvation

Journal of Cell Biology

Volumn 207, Issue 6, 2014, Pages 695-703

  Cruz Garcia, David ^a,b   Curwin, Amy J ^a,b   Popoff, Jean François ^a,b   Bruns, Caroline ^a,b   Duran, Juan M ^a,b   Malhotra, Vivek ^a,b,c  

^a CENTRE FOR GENOMIC REGULATION CRG   (Spain)

^b UNIVERSITAT POMPEU FABRA   (Spain)

^c INSTITUCIÓ CATALANA DE RECERCA I ESTUDIS AVANÇATS ICREA   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

CARRIER PROTEINS AND BINDING PROTEINS; COAT PROTEIN COMPLEX I; COAT PROTEIN COMPLEX II; GLUCOSE; GRH1 PROTEIN; MEMBRANE PROTEIN; PHOSPHATIDYLINOSITOL 3 KINASE; PHOSPHATIDYLINOSITOL KINASE; RAPAMYCIN; SED5 PROTEIN; UNCLASSIFIED DRUG; USO1 PROTEIN; CULTURE MEDIUM; GRH1 PROTEIN, S CEREVISIAE; GUANINE NUCLEOTIDE EXCHANGE FACTOR; PIK1 PROTEIN, S CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEIN; SEC7 GUANINE NUCLEOTIDE EXCHANGE FACTORS; SED5 PROTEIN, S CEREVISIAE; SYNTAXIN; USO1 PROTEIN, S CEREVISIAE; VESICULAR TRANSPORT PROTEIN;

ARTICLE; AUTOPHAGOSOME; BIOGENESIS; CELL VACUOLE; COMPARTMENT FOR UNCONVENTIONAL PROTEIN SECRETION; CONTROLLED STUDY; ENDOPLASMIC RETICULUM; ENDOSOME; GOLGI MEMBRANE; INTRACELLULAR SPACE; MEMBRANE TRANSPORT; NONHUMAN; PRIORITY JOURNAL; PROTEIN LOCALIZATION; PROTEIN SECRETION; SACCHAROMYCES CEREVISIAE; YEAST CELL; COATED VESICLE; CULTURE MEDIUM; CYTOLOGY; METABOLISM; PROTEIN TRANSPORT; SECRETORY VESICLE;

SACCHAROMYCES CEREVISIAE;

1-PHOSPHATIDYLINOSITOL 4-KINASE; CLASS III PHOSPHATIDYLINOSITOL 3-KINASES; COP-COATED VESICLES; CULTURE MEDIA; ENDOPLASMIC RETICULUM; GLUCOSE; GUANINE NUCLEOTIDE EXCHANGE FACTORS; PROTEIN TRANSPORT; QA-SNARE PROTEINS; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; SECRETORY VESICLES; VESICULAR TRANSPORT PROTEINS;

EID: 84930445399     PISSN: 00219525     EISSN: 15408140     Source Type: Journal    
DOI: 10.1083/jcb.201407119     Document Type: Article

References (32)

1. Achstetter, T., A. Franzusoff, C. Field, and R. Schekman. 1988. SEC7 encodes an unusual, high molecular weight protein required for membrane traffic from the yeast Golgi apparatus. J. Biol. Chem. 263:11711-11717.
2. Anjard, C., and W.F. Loomis. 2005. Peptide signaling during terminal differentiation of Dictyostelium. Proc. Natl. Acad. Sci. USA. 102:7607-7611. http://dx.doi.org/10.1073/pnas.0501820102
3. Aoh, Q.L., L.M. Graves, and M.C. Duncan. 2011. Glucose regulates clathrin adaptors at the trans-Golgi network and endosomes. Mol. Biol. Cell. 22:3671-3683. http://dx.doi.org/10.1091/mbc.E11-04-0309
4. Banfield, D.K., M.J. Lewis, and H.R. Pelham. 1995. A SNARE-like protein required for traffic through the Golgi complex. Nature. 375:806-809. http://dx.doi.org/10.1038/375806a0
5. Behnia, R., F.A. Barr, J.J. Flanagan, C. Barlowe, and S. Munro. 2007. The yeast orthologue of GRASP65 forms a complex with a coiled-coil protein that contributes to ER to Golgi traffic. J. Cell Biol. 176:255-261. http://dx .doi.org/10.1083/jcb.200607151
6. Bolte, S., and F.P. Cordelières. 2006. A guided tour into subcellular colocalization analysis in light microscopy. J. Microsc. 224:213-232. http://dx.doi .org/10.1111/j.1365-2818.2006.01706.x
7. Bruns, C., J.M. McCaffery, A.J. Curwin, J.M. Duran, and V. Malhotra. 2011. Biogenesis of a novel compartment for autophagosome-mediated unconventional protein secretion. J. Cell Biol. 195:979-992. http://dx.doi.org/ 10.1083/jcb.201106098
8. Cao, X., N. Ballew, and C. Barlowe. 1998. Initial docking of ER-derived vesicles requires Uso1p and Ypt1p but is independent of SNARE proteins. EMBO J. 17:2156-2165. http://dx.doi.org/10.1093/emboj/17.8.2156
9. Cosson, P., S. Schröder-Köhne, D.S. Sweet, C. Démollière, S. Hennecke, G. Frigerio, and F. Letourneur. 1997. The Sec20/Tip20p complex is involved in ER retrieval of dilysine-tagged proteins. Eur. J. Cell Biol. 73:93-97.
10. Duran, J.M., C. Anjard, C. Stefan, W.F. Loomis, and V. Malhotra. 2010. Unconventional secretion of Acb1 is mediated by autophagosomes. J. Cell Biol. 188:527-536. http://dx.doi.org/10.1083/jcb.200911154
11. Franzusoff, A., K. Redding, J. Crosby, R.S. Fuller, and R. Schekman. 1991. Localization of components involved in protein transport and processing through the yeast Golgi apparatus. J. Cell Biol. 112:27-37. http://dx.doi .org/10.1083/jcb.112.1.27
12. Gibson, D.G., L. Young, R.Y. Chuang, J.C. Venter, C.A. Hutchison III, and H.O. Smith. 2009. Enzymatic assembly of DNA molecules up to several hundred kilobases. Nat. Methods. 6:343-345. http://dx.doi.org/10.1038/nmeth.1318
13. Graef, M., J.R. Friedman, C. Graham, M. Babu, and J. Nunnari. 2013. ER exit sites are physical and functional core autophagosome biogenesis components. Mol. Biol. Cell. 24:2918-2931. http://dx.doi.org/10.1091/mbc.E13-07-0381
14. Hardwick, K.G., and H.R. Pelham. 1992. SED5 encodes a 39-kD integral membrane protein required for vesicular transport between the ER and the Golgi complex. J. Cell Biol. 119:513-521. http://dx.doi.org/10.1083/ jcb.119.3.513
15. Hosobuchi, M., T. Kreis, and R. Schekman. 1992. SEC21 is a gene required for ER to Golgi protein transport that encodes a subunit of a yeast coatomer. Nature. 360:603-605. http://dx.doi.org/10.1038/360603a0
16. Janke, C., M.M. Magiera, N. Rathfelder, C. Taxis, S. Reber, H. Maekawa, A. Moreno-Borchart, G. Doenges, E. Schwob, E. Schiebel, and M. Knop. 2004. A versatile toolbox for PCR-based tagging of yeast genes: new fluorescent proteins, more markers and promoter substitution cassettes. Yeast. 21:947-962. http://dx.doi.org/10.1002/yea.1142
17. Kinseth, M.A., C. Anjard, D. Fuller, G. Guizzunti, W.F. Loomis, and V. Malhotra. 2007. The Golgi-associated protein GRASP is required for unconventional protein secretion during development. Cell. 130:524-534. http:// dx.doi.org/10.1016/j.cell.2007.06.029
18. Letourneur, F., E.C. Gaynor, S. Hennecke, C. Démollière, R. Duden, S.D. Emr, H. Riezman, and P. Cosson. 1994. Coatomer is essential for retrieval of dilysine-tagged proteins to the endoplasmic reticulum. Cell. 79:1199- 1207. http://dx.doi.org/10.1016/0092-8674(94)90011-6
19. Levi, S.K., D. Bhattacharyya, R.L. Strack, J.R. Austin II, and B.S. Glick. 2010. The yeast GRASP Grh1 colocalizes with COPII and is dispensable for organizing the secretory pathway. Traffic. 11:1168-1179. http://dx.doi .org/10.1111/j.1600-0854.2010.01089.x
20. Lewis, M.J., J.C. Rayner, and H.R. Pelham. 1997. A novel SNARE complex implicated in vesicle fusion with the endoplasmic reticulum. EMBO J. 16:3017-3024. http://dx.doi.org/10.1093/emboj/16.11.3017
21. Li, Y., D. Gallwitz, and R. Peng. 2005. Structure-based functional analysis reveals a role for the SM protein Sly1p in retrograde transport to the endoplasmic reticulum. Mol. Biol. Cell. 16:3951-3962. http://dx.doi.org/ 10.1091/mbc.E05-02-0114
22. Li, Z., F.J. Vizeacoumar, S. Bahr, J. Li, J. Warringer, F.S. Vizeacoumar, R. Min, B. Vandersluis, J. Bellay, M. Devit, et al. 2011. Systematic exploration of essential yeast gene function with temperature-sensitive mutants. Nat. Biotechnol. 29:361-367.
23. Malhotra, V. 2013. Unconventional protein secretion: an evolving mechanism. EMBO J. 32:1660-1664. http://dx.doi.org/10.1038/emboj.2013.104
24. Manjithaya, R., C. Anjard, W.F. Loomis, and S. Subramani. 2010. Unconventional secretion of Pichia pastoris Acb1 is dependent on GRASP protein, peroxisomal functions, and autophagosome formation. J. Cell Biol. 188:537-546. http://dx.doi.org/10.1083/jcb.200911149
25. Nakajima, H., A. Hirata, Y. Ogawa, T. Yonehara, K. Yoda, and M. Yamasaki. 1991. A cytoskeleton-related gene, uso1, is required for intracellular protein transport in Saccharomyces cerevisiae. J. Cell Biol. 113:245-260. http://dx.doi.org/10.1083/jcb.113.2.245
26. Nichols, B.J., and H.R. Pelham. 1998. SNAREs and membrane fusion in the Golgi apparatus. Biochim. Biophys. Acta. 1404:9-31. http://dx.doi.org/ 10.1016/S0167-4889(98)00044-5
27. Rabouille, C., V. Malhotra, and W. Nickel. 2012. Diversity in unconventional protein secretion. J. Cell Sci. 125:5251-5255. http://dx.doi.org/10.1242/ jcs.103630
28. Sato, T.K., T. Darsow, and S.D. Emr. 1998. Vam7p, a SNAP-25-like molecule, and Vam3p, a syntaxin homolog, function together in yeast vacuolar protein trafficking. Mol. Cell. Biol. 18:5308-5319.
29. Sheff, M.A., and K.S. Thorn. 2004. Optimized cassettes for fluorescent protein tagging in Saccharomyces cerevisiae. Yeast. 21:661-670. http://dx.doi .org/10.1002/yea.1130
30. Tu, L., W.C. Tai, L. Chen, and D.K. Banfield. 2008. Signal-mediated dynamic retention of glycosyltransferases in the Golgi. Science. 321:404-407. http://dx.doi.org/10.1126/science.1159411
31. Walch-Solimena, C., and P. Novick. 1999. The yeast phosphatidylinositol-4-OH kinase pik1 regulates secretion at the Golgi. Nat. Cell Biol. 1:523-525. http://dx.doi.org/10.1038/70319
32. Weinberger, A., F. Kamena, R. Kama, A. Spang, and J.E. Gerst. 2005. Control of Golgi morphology and function by Sed5 t-SNARE phosphorylation. Mol. Biol. Cell. 16:4918-4930. http://dx.doi.org/10.1091/mbc.E05-02-0101