The European and Japanese outbreaks of H5N8 derive froma single source population providing evidence for the dispersal along the long distance bird migratory flyways

PeerJ

Volumn 2015, Issue 3, 2015, Pages

  Dalby, Andrew R ^a   Iqbal, Munir ^b  

^a UNIVERSITY OF WESTMINSTER   (United Kingdom)

^b Pribright Institute   (United Kingdom)

Author keywords

Bayesian; Coalescence; H5N8; High pathogenicity avian influenza; HPAI; Korea; Migratory birds; Siberia

Indexed keywords

BIRD; BREEDING; DNA SEQUENCE; SUMMER;

EID: 84930386002     PISSN: None     EISSN: 21678359     Source Type: Journal    
DOI: 10.7717/peerj.934     Document Type: Article

References (32)

1. Alexander D, Parsons G,Manvell R. 1986. Experimental assessment of the pathogenicity of eight avian influenza A viruses of H5 subtype for chickens, turkeys, ducks and quail. Avian Pathology 15:647-662 DOI 10.1080/03079458608436328.
2. Allport G, Poole C, Park E, Jo S, Eldridge M. 1991. The feeding ecology, requirements and distribution of Baikal Teal Anas formosa in the Republic of Korea. Wildfowl 42:98-107.
3. Bae Y, Lee S-B,Min KC,Mo J-S, Jeon EO, Koo B-S, Kwon H-I, Choi YK, Kim JJ, Kim J-N. 2014. Pathological evaluation of natural cases of a highly pathogenic avian influenza virus, subtype H5N8, in broiler breeders and commercial layers in South Korea. Avian Diseases 59(1):175-182 DOI 10.1637/10921-081914-Case.
4. Bao Y, Bolotov P, Dernovoy D, Kiryutin B, Zaslavsky L, Tatusova T, Ostell J, Lipman D. 2008. The influenza virus resource at the National Center for Biotechnology Information. Journal of Virology 82:596-601 DOI 10.1128/JVI.02005-07.
5. Beekman JH, Nolet BA, Klaassen M. 2002. Skipping swans: fuelling rates and wind conditions determine differential use of migratory stopover sites of Bewick's Swans Cygnus bewickii. Ardea 90:437-460.
6. Boere GC, Stroud DA. 2006. The Flyway concept: what it is and what it isn't. In:Waterbirds around the world. Edinburgh: The Stationary Office, 40-47.
7. Bogner P, Capua I, Lipman DJ, Cox NJ. 2006. A global initiative on sharing avian flu data. Nature 442:981-981 DOI 10.1038/442981a.
8. Bouckaert R, Heled J, Kühnert D, Vaughan T,Wu C-H, Xie D, Suchard MA, Rambaut A, Drummond AJ. 2014. BEAST 2: a software platform for Bayesian evolutionary analysis. PLoS Computational Biology 10:e1003537 DOI 10.1371/journal.pcbi.1003537.
9. Dusek RJ, Hallgrimsson GT, Ip HS, Jónsson JE, Sreevatsan S, Nashold SW, TeSlaa JL, Enomoto S, Halpin RA, Lin X. 2014. North atlantic migratory bird flyways provide routes for intercontinental movement of avian influenza viruses. PL oS ONE 9:e92075 DOI 10.1371/journal.pone.0092075.
10. Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32:1792-1797 DOI 10.1093/nar/gkh340.
11. Fan S, Zhou L,Wu D, Gao X, Pei E,Wang T, Gao Y, Xia X. 2014. A novel highly pathogenic H5N8 avian influenza virus isolated from a wild duck in China. Influenza and other Respiratory Viruses 8:646-653 DOI 10.1111/irv.12289.
12. Gaidet N, Cappelle J, Takekawa JY, Prosser DJ, Iverson SA, Douglas DC, Perry WM, Mundkur T, Newman SH. 2010. Potential spread of highly pathogenic avian influenza H5N1 by wildfowl: dispersal ranges and rates determined from large-scale satellite telemetry. Journal of Applied Ecology 47:1147-1157 DOI 10.1111/j.1365-2664.2010.01845.x.
13. Green M, Alerstam T, Clausen P, Drent R, Ebbinge BS. 2002. Dark-bellied Brent Geese Branta bernicla bernicla, as recorded by satellite telemetry, do not minimize flight distance during spring migration. Ibis 144:106-121 DOI 10.1046/j.0019-1019.2001.00017.x.
14. Hasegawa M, Kishino H, Yano T-A. 1985. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. Journal of Molecular Evolution 22:160-174 DOI 10.1007/BF02101694.
15. Jeong J, Kang H-M, Lee E-K, Song B-M, Kwon Y-K, Kim H-R, Choi K-S, Kim J-Y, Lee H-J, Moon O-K. 2014. Highly pathogenic avian influenza virus (H5N8) in domestic poultry and its relationship with migratory birds in South Korea during 2014. Veterinary Microbiology 173:249-257 DOI 10.1016/j.vetmic.2014.08.002.
16. Kang H-M, Lee EK, Song BN, Jeong J, Choi JG, Jeong J,Moon O-K, Yoon H, Cho Y, Kang Y-M, Lee H-S, Lee Y-J. 2015. Novel reassortant influenza A (H5N8) viruses among inoculated domestic and wild ducks, South Korea, 2014. Emerging Infectious Diseases 298-304 DOI 10.3201/eid2102.141268.
17. Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Molecular Biology and Evolution 30:772-780 DOI 10.1093/molbev/mst010.
18. Kim Y-I, Pascua PNQ, Kwon H-I, Lim G-J, Kim E-H, Yoon S-W, Park S-J, Kim SM, Choi E-J, Si Y-J. 2014. Pathobiological features of a novel, highly pathogenic avian influenza A (H5N8) virus. Emerging Microbes & Infections 3:e75 DOI 10.1038/emi.2014.75.
19. Lam TTY, Ip HS, Ghedin E,Wentworth DE, Halpin RA, Stockwell TB, Spiro DJ, Dusek RJ, Bortner JB, Hoskins J. 2012. Migratory flyway and geographical distance are barriers to the gene flow of influenza virus among North American birds. Ecology Letters 15:24-33 DOI 10.1111/j.1461-0248.2011.01703.x.
20. Lee Y-J, Kang H-M, Lee E-K, Song B-M, Jeong J, Kwon Y-K, Kim H-R, Lee K-J, Hong M-S, Jang I. 2014. Novel reassortant influenza A (H5N8) viruses, South Korea, 2014. Emerging Infectious Diseases 20:1087-1089.
21. Lemey P, Rambaut A, Drummond AJ, Suchard MA. 2009. Bayesian phylogeography finds its roots. PLoS Computational Biology 5:e1000520 DOI 10.1371/journal.pcbi.1000520.
22. Miyabayashi Y,Mundkur T. 1999. Atlas of key sites for Anatidae in the East Asian Flyway. Tokyo: Wetlands International.
23. Munster VJ, Baas C, Lexmond P,Waldenström J,Wallensten A, Fransson T, Rimmelzwaan GF, Beyer WE, Schutten M, Olsen B. 2007. Spatial, temporal, and species variation in prevalence of influenza A viruses in wild migratory birds. PLoS Pathogens 3:e61 DOI 10.1371/journal.ppat.0030061.
24. Murphy T. 1986. The control and epidemiology of an influenza A outbreak in Ireland. In: McFerran JB, McNulty MS, eds. Acute virus infections of poultry. Dordrecht: Kluwer, 23-28.
25. Posada D, Crandall KA. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14:817-818 DOI 10.1093/bioinformatics/14.9.817.
26. Rambaut A. 2007. FigTree, a graphical viewer of phylogenetic trees. Available at http://tree.bio.ed. ac.uk/software/figtree.
27. Rambaut A, Drummond A. 2013a. Tracer. v1. 5. Available at http://beast.bio.ed.ac.uk/Tracer.
28. Rambaut A, Drummond A. 2013b. TreeAnnotator. v1. 7.0. Available at http://beast.bio.ed.ac.uk/ TreeAnnotator.
29. SlimbridgeWildlife Trust. Bewick's Swan Diary. Available at http://www.wwt.org.uk/news/ all-news/2014/10/wwt-slimbridge-diaries/wwt-slimbridge-diaries-bewicks-swan-diary/ bewicks-reach-britain/ (accessed 4th December 2014).
30. Takekawa JY, Newman SH, Xiao X, Prosser DJ, Spragens KA, Palm EC, Yan B, Li T, Lei F, Zhao D. 2010. Migration of waterfowl in the East Asian flyway and spatial relationship to HPAI H5N1 outbreaks. Avian Diseases 54:466-476 DOI 10.1637/8914-043009-Reg.1.
31. Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. 2013. MEGA6: molecular evolutionary genetics analysis version 6.0. Molecular Biology and Evolution 30:2725-2729 DOI 10.1093/molbev/mst197.
32. Zhao K, Gu M, Zhong L, Duan Z, Zhang Y, Zhu Y, Zhao G, Zhao M, Chen Z, Hu S. 2013. Characterization of three H5N5 and one H5N8 highly pathogenic avian influenza viruses in China. Veterinary Microbiology 163:351-357 DOI 10.1016/j.vetmic.2012.12.025.