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Volumn 41, Issue 2, 2015, Pages 520-529

Applying multi-scale occupancy models to infer host and site occupancy of an emerging viral fish pathogen in the Great Lakes

Author keywords

Multi scale occupancy model; QRT PCR; Reversible Jump Markov chain Monte Carlo; Viral hemorrhagic septicemia virus; Viral surveillance; Virus isolation

Indexed keywords

DIAGNOSIS; FISH; FISHERIES; LOGISTIC REGRESSION; MARKOV CHAINS; PATHOGENS; VIRUSES;

EID: 84930249835     PISSN: 03801330     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jglr.2015.01.002     Document Type: Article
Times cited : (9)

References (45)
  • 1
    • 33646526518 scopus 로고    scopus 로고
    • Effects of temperature on infectivity and of commercial freezing on survival of the North American strain of viral hemorrhagic septicemia virus (VHSV)
    • Arkush K.D., Mendonca H.L., McBride A.M., Yun S., McDowell T.S., Hedrick R.P. Effects of temperature on infectivity and of commercial freezing on survival of the North American strain of viral hemorrhagic septicemia virus (VHSV). Dis. Aquat. Org. 2006, 69:145-151.
    • (2006) Dis. Aquat. Org. , vol.69 , pp. 145-151
    • Arkush, K.D.1    Mendonca, H.L.2    McBride, A.M.3    Yun, S.4    McDowell, T.S.5    Hedrick, R.P.6
  • 3
    • 0032273615 scopus 로고    scopus 로고
    • General models for monitoring convergence of iterative simulations
    • Brooks S., Gelman A. General models for monitoring convergence of iterative simulations. J. Comput. Graph. Stat. 1997, 7:434-455.
    • (1997) J. Comput. Graph. Stat. , vol.7 , pp. 434-455
    • Brooks, S.1    Gelman, A.2
  • 8
    • 79957934758 scopus 로고    scopus 로고
    • Temporal variation in prevalence of viral hemorrhagic septicemia virus type IVb among upper St. Lawrence River smallmouth bass
    • Eckerlin G.E., Farrell J.M., Casey R.N., Hope K.M., Groocock G.H., Bowser P.R., Casey J. Temporal variation in prevalence of viral hemorrhagic septicemia virus type IVb among upper St. Lawrence River smallmouth bass. Trans. Am. Fish. Soc. 2011, 140:529-536.
    • (2011) Trans. Am. Fish. Soc. , vol.140 , pp. 529-536
    • Eckerlin, G.E.1    Farrell, J.M.2    Casey, R.N.3    Hope, K.M.4    Groocock, G.H.5    Bowser, P.R.6    Casey, J.7
  • 9
    • 33749514835 scopus 로고    scopus 로고
    • Isolation of viral hemorrhagic septicemia virus from muskellunge, Esox masquinongy (Mitchell), in Lake St. Clair, Michigan, USA reveals a new sublineage of the North American genotype
    • Elsayed E., Faisal M., Thomas M., Whelan G., Batts W., Winton W. Isolation of viral hemorrhagic septicemia virus from muskellunge, Esox masquinongy (Mitchell), in Lake St. Clair, Michigan, USA reveals a new sublineage of the North American genotype. J. Fish Dis. 2006, 29:611-619.
    • (2006) J. Fish Dis. , vol.29 , pp. 611-619
    • Elsayed, E.1    Faisal, M.2    Thomas, M.3    Whelan, G.4    Batts, W.5    Winton, W.6
  • 10
    • 58249121846 scopus 로고    scopus 로고
    • Practical sample size calculations for surveillance and diagnostic investigations
    • Fosgate G.T. Practical sample size calculations for surveillance and diagnostic investigations. J. Vet. Diagn. Investig. 2009, 21:3-14.
    • (2009) J. Vet. Diagn. Investig. , vol.21 , pp. 3-14
    • Fosgate, G.T.1
  • 13
    • 84972492387 scopus 로고
    • Inference from iterative simulation using multiple sequences
    • Gelman A., Rubin D.B. Inference from iterative simulation using multiple sequences. Stat. Sci. 1992, 7:457-472.
    • (1992) Stat. Sci. , vol.7 , pp. 457-472
    • Gelman, A.1    Rubin, D.B.2
  • 14
    • 84862200956 scopus 로고    scopus 로고
    • Persistence of viral RNA in fish infected with VHSV-IVb at 15°C and then moved to warmer temperatures after the onset of disease
    • Goodwin A.E., Merry G.E., Noyes A.D. Persistence of viral RNA in fish infected with VHSV-IVb at 15°C and then moved to warmer temperatures after the onset of disease. J. Fish Dis. 2012, 35:523-528.
    • (2012) J. Fish Dis. , vol.35 , pp. 523-528
    • Goodwin, A.E.1    Merry, G.E.2    Noyes, A.D.3
  • 15
    • 77956889087 scopus 로고
    • Reversible jump Markov chain Monte Carlo computation and Bayesian model determination
    • Green P.J. Reversible jump Markov chain Monte Carlo computation and Bayesian model determination. Biometrika 1995, 82:711-732.
    • (1995) Biometrika , vol.82 , pp. 711-732
    • Green, P.J.1
  • 16
    • 58949083341 scopus 로고    scopus 로고
    • Stability of viral hemorrhagic septicemia virus (VHSV) in freshwater and seawater at various temperatures
    • Hawley L.M., Garver K.A. Stability of viral hemorrhagic septicemia virus (VHSV) in freshwater and seawater at various temperatures. Dis. Aquat. Org. 2008, 82:171-178.
    • (2008) Dis. Aquat. Org. , vol.82 , pp. 171-178
    • Hawley, L.M.1    Garver, K.A.2
  • 17
    • 33750013749 scopus 로고    scopus 로고
    • Extending the principles of community ecology to address the epidemiology of host-pathogen systems
    • Oxford University Press, Oxford, S.K. Collinge, C. Ray (Eds.)
    • Holt R.D., Dobson A.P. Extending the principles of community ecology to address the epidemiology of host-pathogen systems. Disease Ecology Community Structure and Pathogen Dynamics 2006, 6-27. Oxford University Press, Oxford. S.K. Collinge, C. Ray (Eds.).
    • (2006) Disease Ecology Community Structure and Pathogen Dynamics , pp. 6-27
    • Holt, R.D.1    Dobson, A.P.2
  • 18
    • 77954682179 scopus 로고    scopus 로고
    • Comparison of quantitative RT-PCR with cell culture to detect viral hemorrhagic septicemia virus IVb (VHSV IVb) infections in the Great Lakes
    • Hope K.M., Casey R.N., Groocock G.H., Getchell R.G., Bowser P.R., Casey J.W. Comparison of quantitative RT-PCR with cell culture to detect viral hemorrhagic septicemia virus IVb (VHSV IVb) infections in the Great Lakes. J. Aquat. Anim. Health 2010, 22:50-61.
    • (2010) J. Aquat. Anim. Health , vol.22 , pp. 50-61
    • Hope, K.M.1    Casey, R.N.2    Groocock, G.H.3    Getchell, R.G.4    Bowser, P.R.5    Casey, J.W.6
  • 19
    • 0037059226 scopus 로고    scopus 로고
    • Influence of storage temperature on infectious hematopoietic necrosis virus detection by cell culture isolation and RT-PCR methods
    • Hostnik P., Barlic-Maganja D., Strancar M., Jencic V., Toplak I., Grom J. Influence of storage temperature on infectious hematopoietic necrosis virus detection by cell culture isolation and RT-PCR methods. Dis. Aquat. Org. 2002, 52:179-184.
    • (2002) Dis. Aquat. Org. , vol.52 , pp. 179-184
    • Hostnik, P.1    Barlic-Maganja, D.2    Strancar, M.3    Jencic, V.4    Toplak, I.5    Grom, J.6
  • 21
    • 72149117391 scopus 로고    scopus 로고
    • Experimental studies confirm the wide host range of the Great Lakes viral haemorrhagic septicaemia virus genotype IVb
    • Kim R., Faisal M. Experimental studies confirm the wide host range of the Great Lakes viral haemorrhagic septicaemia virus genotype IVb. J. Fish Dis. 2010, 33:83-88.
    • (2010) J. Fish Dis. , vol.33 , pp. 83-88
    • Kim, R.1    Faisal, M.2
  • 23
    • 84865054495 scopus 로고    scopus 로고
    • Site-occupancy modelling as a novel framework for assessing test sensitivity and estimating wildlife disease prevalence from imperfect diagnostic tests
    • Lachish S., Gopalaswamy A.M., Knowles S.C.L., Sheldon B.C. Site-occupancy modelling as a novel framework for assessing test sensitivity and estimating wildlife disease prevalence from imperfect diagnostic tests. Methods Ecol. Evol. 2012, 3:339-348. 10.1111/j.2041-210X.2011.00156.x.
    • (2012) Methods Ecol. Evol. , vol.3 , pp. 339-348
    • Lachish, S.1    Gopalaswamy, A.M.2    Knowles, S.C.L.3    Sheldon, B.C.4
  • 24
    • 84855951585 scopus 로고    scopus 로고
    • Dealing with detection error in site occupancy surveys: What can we do with a single survey?
    • Lele S.R., Moreno M., Bayne E. Dealing with detection error in site occupancy surveys: What can we do with a single survey?. J. Plant Ecol. 2012, 5:22-31.
    • (2012) J. Plant Ecol. , vol.5 , pp. 22-31
    • Lele, S.R.1    Moreno, M.2    Bayne, E.3
  • 25
  • 26
    • 33645466595 scopus 로고    scopus 로고
    • A Bayesian toolkit for genetic association studies
    • Lunn D.J., Whittaker J.C., Best N. A Bayesian toolkit for genetic association studies. Genet. Epidemiol. 2006, 30:231-247.
    • (2006) Genet. Epidemiol. , vol.30 , pp. 231-247
    • Lunn, D.J.1    Whittaker, J.C.2    Best, N.3
  • 27
    • 70450280935 scopus 로고    scopus 로고
    • Generic reversible jump MCMC using graphical models
    • Lunn D.J., Best N., Whittaker J.C. Generic reversible jump MCMC using graphical models. Stat. Comput. 2009, 19:395-408.
    • (2009) Stat. Comput. , vol.19 , pp. 395-408
    • Lunn, D.J.1    Best, N.2    Whittaker, J.C.3
  • 30
    • 78650961118 scopus 로고    scopus 로고
    • Addressing challenges when studying mobile or episodic species: hierarchical Bayes estimation of occupancy and use
    • Mordecai R.S., Mattsson B.J., Tzikowski C.J., Cooper R.J. Addressing challenges when studying mobile or episodic species: hierarchical Bayes estimation of occupancy and use. J. Appl. Ecol. 2011, 48:56-66.
    • (2011) J. Appl. Ecol. , vol.48 , pp. 56-66
    • Mordecai, R.S.1    Mattsson, B.J.2    Tzikowski, C.J.3    Cooper, R.J.4
  • 32
    • 79952218543 scopus 로고    scopus 로고
    • Biological invasions and the dynamics of endemic diseases in freshwater ecosystems
    • Poulin R., Paterson R.A., Townsend C.R., Tompkins D.M., Kelly D.W. Biological invasions and the dynamics of endemic diseases in freshwater ecosystems. Freshw. Biol. 2011, 56:676-688.
    • (2011) Freshw. Biol. , vol.56 , pp. 676-688
    • Poulin, R.1    Paterson, R.A.2    Townsend, C.R.3    Tompkins, D.M.4    Kelly, D.W.5
  • 33
    • 84863304598 scopus 로고    scopus 로고
    • R Foundation for Statistical Computing, Vienna, Austria, (Available at
    • R Core Development Team R: A Language and Environment for Statistical Computing 2011, R Foundation for Statistical Computing, Vienna, Austria, (Available at: http://www.R-project.org).
    • (2011) R: A Language and Environment for Statistical Computing
  • 34
    • 33645046882 scopus 로고    scopus 로고
    • Site occupancy models with heterogeneous detection probabilities
    • Royle J.A. Site occupancy models with heterogeneous detection probabilities. Biometrics 2006, 62:97-102.
    • (2006) Biometrics , vol.62 , pp. 97-102
    • Royle, J.A.1
  • 35
    • 34248583853 scopus 로고    scopus 로고
    • A Bayesian state-space formulation of dynamic occupancy models
    • Royle J.A., Kéry M. A Bayesian state-space formulation of dynamic occupancy models. Ecology 2007, 88:1813-1823.
    • (2007) Ecology , vol.88 , pp. 1813-1823
    • Royle, J.A.1    Kéry, M.2
  • 36
    • 0041813267 scopus 로고    scopus 로고
    • Estimating abundance from repeated presence-absence data or point counts
    • Royle J.A., Nichols J.D. Estimating abundance from repeated presence-absence data or point counts. Ecology 2003, 84:777-790.
    • (2003) Ecology , vol.84 , pp. 777-790
    • Royle, J.A.1    Nichols, J.D.2
  • 37
    • 84983472534 scopus 로고
    • Tables of sample size requirements for detection of fish infected by pathogens: three confidence levels for different infection prevalence and carious population sizes
    • Simon R.C., Schill B. Tables of sample size requirements for detection of fish infected by pathogens: three confidence levels for different infection prevalence and carious population sizes. J. Fish Dis. 1984, 7:515-520.
    • (1984) J. Fish Dis. , vol.7 , pp. 515-520
    • Simon, R.C.1    Schill, B.2
  • 41
    • 13444302396 scopus 로고    scopus 로고
    • R2WinBUGS: a package for running WinBUGS from R
    • Sturtz S., Ligges U., Gelman A. R2WinBUGS: a package for running WinBUGS from R. J. Stat. Softw. 2005, 12:1-16.
    • (2005) J. Stat. Softw. , vol.12 , pp. 1-16
    • Sturtz, S.1    Ligges, U.2    Gelman, A.3
  • 42
    • 34249725582 scopus 로고    scopus 로고
    • Use of site occupancy models to estimate prevalence of Myxobolus cerebralis infection in trout
    • Thompson K.G. Use of site occupancy models to estimate prevalence of Myxobolus cerebralis infection in trout. J. Aquat. Anim. Health 2007, 19:8-13.
    • (2007) J. Aquat. Anim. Health , vol.19 , pp. 8-13
    • Thompson, K.G.1
  • 44
    • 84865077948 scopus 로고    scopus 로고
    • United States Department of Agriculture Animal and Plant Health Inspection Service Veterinary Services Centers for Epidemiology and Animal Health National Surveillance Unit
    • United States Department of Agriculture Animal and Plant Health Inspection Service Veterinary Services Centers for Epidemiology and Animal Health National Surveillance Unit Viral hemorrhagic septicemia virus IVb U.S. surveillance report 2009 2009.
    • (2009) Viral hemorrhagic septicemia virus IVb U.S. surveillance report 2009
  • 45
    • 77953976699 scopus 로고    scopus 로고
    • Viral Haemorrhagic Septicaemia
    • World Organization for Animal Health Viral Haemorrhagic Septicaemia. Manual of Diagnostic Tests for Aquatic Animals 2009, 279-298. (Available: http://www.oie.int/fileadmin/Home/eng/Health_standards/aahm/2010/2.3.09.VHS.pdf).
    • (2009) Manual of Diagnostic Tests for Aquatic Animals , pp. 279-298


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