Automatic voxel positioning for MRS at 7 T

Magnetic Resonance Materials in Physics, Biology and Medicine

Volumn 28, Issue 3, 2015, Pages 259-270

  Dou, Weiqiang ^a   Speck, Oliver ^a,b,c,d   Benner, Thomas ^e   Kaufmann, Jörn ^a   Li, Meng ^b   Zhong, Kai ^f   Walter, Martin ^a,b,c  

^a OTTO VON GUERICKE UNIVERSITY   (Germany)

^b LEIBNIZ INSTITUTE FOR NEUROBIOLOGY   (Germany)

^c Center for Behavioral Brain Science (CBBS)   (Germany)

^d GERMAN CENTER FOR NEURODEGENERATIVE DISEASES DZNE   (Germany)

^e SIEMENS AG   (Germany)

^f INSTITUTE OF GEOLOGY AND GEOPHYSICS   (China)

Author keywords

7T; Accuracy; Automatic manual voxel positioning; MRS; Reproducibility

Indexed keywords

ADULT; ANATOMY AND HISTOLOGY; AUTOMATED PATTERN RECOGNITION; CHEMISTRY; CINGULATE GYRUS; FEMALE; HUMAN; IMAGE ENHANCEMENT; IMAGE SUBTRACTION; MALE; MOLECULAR IMAGING; NUCLEAR MAGNETIC RESONANCE IMAGING; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PROCEDURES; REPRODUCIBILITY; SENSITIVITY AND SPECIFICITY; THREE DIMENSIONAL IMAGING;

ADULT; FEMALE; GYRUS CINGULI; HUMANS; IMAGE ENHANCEMENT; IMAGING, THREE-DIMENSIONAL; MAGNETIC RESONANCE IMAGING; MAGNETIC RESONANCE SPECTROSCOPY; MALE; MOLECULAR IMAGING; PATTERN RECOGNITION, AUTOMATED; REPRODUCIBILITY OF RESULTS; SENSITIVITY AND SPECIFICITY; SUBTRACTION TECHNIQUE;

EID: 84930211505     PISSN: 09685243     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10334-014-0469-9     Document Type: Article

References (24)

1. Houkin K, Kamada K, Kamiyama H, Iwasaki Y, Abe H, Kashiwaba T (1993) Longitudinal changes in proton magnetic resonance spectroscopy in cerebral infarction. Stroke 24:1316–1321
2. Schott JM, Frost C, MacManus DG, Ibrahim F, Waldman AD, Fox NC (2010) Short echo time proton magnetic resonance spectroscopy in Alzheimer’s disease: a longitudinal multiple time point study. Brain 133:3315–3322
3. Itti L, Chang L, Ernst T (2001) Automatic scan prescription for brain MRI. Magn Reson Med 45:486–494
4. Benner T, Wisco JJ, van der Kouwe AJ, Fischl B, Vangel MG, Hochberg FH, Sorensen AG (2006) Comparison of manual and automatic section positioning of brain MR images. Radiology 239:246–254
5. Chen T, Zhan Y, Zhang S, Dewan M (2011) Automatic alignment of brain MR scout scans using data-adaptive multi-structural model. Med Image Comput Comput Assist Interv 14:574–581
6. Welch EB, Manduca A, Grimm RC, Ward HA, Jack CR Jr (2002) Spherical navigator echoes for full 3D rigid body motion measurement in MRI. Magn Reson Med 47:32–41
7. Welch EB, Manduca A, Grimm RC, Jack CR Jr (2004) Interscan registration using navigator echoes. Magn Reson Med 52:1448–1452
8. Van der Kouwe AJ, Benner T, Fischl B, Schmitt F, Salat DH, Harder M, Sorensen AG, Dale AM (2005) On-line automatic slice positioning for brain MR imaging. Neuroimage 27:222–230
9. Sharp GC, Kollipara S, Madden T, Jiang SB, Rosenthal SJ (2005) Anatomic feature-based registration for patient set-up in head and neck cancer radiotherapy. Phys Med Biol 50:4667–4679
10. Zhang L, Xu Q, Chen C, Novak CL (2009) Automated alignment of MRI brain scan by anatomic landmarks. In: Proceedings SPIE Medical Imaging, vol 7258
11. Gedat E, Braun J, Sack I, Bernarding J (2004) Prospective registration of human head magnetic resonance images for reproducible slice positioning using localizer images. J Magn Reson Imaging 20:581–587
12. Chong DG, Kreis R, Bolliger CS, Boesch C, Slotboom J (2011) Two-dimensional linear-combination model fitting of magnetic resonance spectra to define the macromolecule baseline using FiTAID, a Fitting Tool for Arrays of Interrelated Datasets. Magn Reson Mater Phy 24:147–164
13. Saude EJ, Adamko D, Rowe BH, Marrie T, Sykes BD (2007) Variation of metabolites in normal human urine. Metabolomics 3:439–451
14. Ashburner J, Barnes G, Chen C, Daunizeau J, Flandin G, Friston K, Kiebel S, Kilner J, Litvak V, Moran R, Penny W, Rosa M, Stephan K, Gitelman D, Henson R, Hutton C, Glauche V, Mattout J, Phillips C (2013) SPM8 manual. http://www.fil.ion.ucl.ac.uk/spm/. Accessed 4 Feb 2013
15. Van de Moortele P, Auerbach EJ, Olman C, Yacoub E, Uğurbil K, Moeller S (2009) T1 weighted brain images at 7 Tesla unbiased for Proton Density, T2* contrast and RF coil receive B1 sensitivity with simultaneous vessel visualization. Neuroimage 46:432–446
16. Provencher SW (1993) Estimation of metabolite concentrations from localized in vivo proton NMR spectra. Magn Reson Med 30:672–679
17. Provencher SW (2014) LCModel & LCMgui user’s manual. http://s-provencher.com/pages/lcm-manual.shtml. Accessed 2 Feb 2014
18. Cavassila S, Deval S, Huegen C, van Ormondt D, Graveron-Demilly D (2001) Cramér-Rao bounds: an evaluation tool for quantitation. NMR Biomed 14:278–283
19. Nguyen ML, Willows B, Khan R, Chi A, Kim L, Nour SG, Sroka T, Kerr C, Godinez J, Mills M, Karlsson U, Altdorfer G, Nguyen NP, Jendrasiak G, International Geriatric Radiotherapy Group (2014) The potential role of magnetic resonance spectroscopy in image-guided radiotherapy. Front Oncol 4:91
20. Molyneux PD, Tofts PS, Fletcher A, Gunn B, Robinson P, Gallagher H, Moseley IF, Barker GJ, Miller DH (1998) Precision and reliability for measurement of change in MRI lesion volume in multiple sclerosis: a comparison of two computer assisted techniques. J Neurol Neurosurg Psychiatry 65:42–47
21. Freeborough PA, Woods RP, Fox NC (1996) Accurate registration of serial 3D MR brain images and its application to visualizing change in neurodegenerative disorders. J Comput Assist Tomogr 20:1012–1022
22. Hess AT, van der Kouwe AJ, Mbugua KK, Laughton B, Meintjes EM (2013) Quality of 186 child brain spectra using motion and B0 shim navigated single voxel spectroscopy. J Magn Reson Imaging. doi:10.1002/jmri.24436
23. Hess AT, Tisdall MD, Andronesi OC, Meintjes EM, van der Kouwe AJ (2011) Real-time motion and B0 corrected single voxel spectroscopy using volumetric navigators. Magn Reson Med 66:314–323
24. Zaitsev M, Speck O, Hennig J, Büchert M (2010) Single-voxel MRS with prospective motion correction and retrospective frequency correction. NMR Biomed 23(3):325–332