-
1
-
-
84885022702
-
Selected insights from application of wholegenome sequencing for outbreak investigations
-
PMID:23856896
-
Le VT, Diep BA. Selected insights from application of wholegenome sequencing for outbreak investigations. Curr Opin Crit Care. 2013;19(5):432-9. http://dx.doi.org/10.1097/MCC.0b013e3283636b8c PMID:23856896
-
(2013)
Curr Opin Crit Care
, vol.19
, Issue.5
, pp. 432-439
-
-
Le, V.T.1
Diep, B.A.2
-
2
-
-
84882269831
-
Rapid bacterial whole-genome sequencing to enhance diagnostic and public health microbiology
-
PMID:23857503
-
Reuter S, Ellington MJ, Cartwright EJ, Köser CU, Török ME, Gouliouris T, et al. Rapid bacterial whole-genome sequencing to enhance diagnostic and public health microbiology. JAMA Intern Med. 2013;173(15):1397-404. http://dx.doi.org/10.1001/jamainternmed.2013.7734 PMID:23857503
-
(2013)
JAMA Intern Med
, vol.173
, Issue.15
, pp. 1397-1404
-
-
Reuter, S.1
Ellington, M.J.2
Cartwright, E.J.3
Köser, C.U.4
Török, M.E.5
Gouliouris, T.6
-
3
-
-
84867587461
-
Identification of acquired antimicrobial resistance genes
-
PMID:22782487
-
Zankari E, Hasman H, Cosentino S, Vestergaard M, Rasmussen S, Lund O, et al. Identification of acquired antimicrobial resistance genes. J Antimicrob Chemother. 2012;67(11):2640-4. http://dx.doi.org/10.1093/jac/dks261 PMID:22782487
-
(2012)
J Antimicrob Chemother
, vol.67
, Issue.11
, pp. 2640-2644
-
-
Zankari, E.1
Hasman, H.2
Cosentino, S.3
Vestergaard, M.4
Rasmussen, S.5
Lund, O.6
-
4
-
-
85181434117
-
-
The Danish Integrated Antimicrobial Resistance Monitoring and Research Programme (DANMAP) Reports. [Accessed 5 Dec 2013]
-
The Danish Integrated Antimicrobial Resistance Monitoring and Research Programme (DANMAP) Reports. [Accessed 5 Dec 2013]. Available from: http:www.danmap.org/Downloads/Reports.aspx
-
-
-
-
5
-
-
84875741847
-
A genomic portrait of the emergence, evolution, and global spread of a methicillin-resistant Staphylococcus aureus pandemic
-
PMID:23299977
-
Holden MT, Hsu LY, Kurt K, Weinert LA, Mather AE, Harris SR, et al. A genomic portrait of the emergence, evolution, and global spread of a methicillin-resistant Staphylococcus aureus pandemic. Genome Res. 2013;23(4):653-64. http://dx.doi.org/10.1101/gr.147710.112 PMID:23299977
-
(2013)
Genome Res
, vol.23
, Issue.4
, pp. 653-664
-
-
Holden, M.T.1
Hsu, L.Y.2
Kurt, K.3
Weinert, L.A.4
Mather, A.E.5
Harris, S.R.6
-
6
-
-
77949545786
-
Molecular epidemiology of communityassociated meticillin-resistant Staphylococcus aureus in Europe
-
PMID:20334846
-
Otter JA, French GL. Molecular epidemiology of communityassociated meticillin-resistant Staphylococcus aureus in Europe. Lancet Infect Dis. 2010;10(4):227-39. http://dx.doi.org/10.1016/S1473-3099(10)70053-0 PMID:20334846
-
(2010)
Lancet Infect Dis
, vol.10
, Issue.4
, pp. 227-239
-
-
Otter, J.A.1
French, G.L.2
-
7
-
-
84865231395
-
Transforming clinical microbiology with bacterial genome sequencing
-
PMID:22868263
-
Didelot X, Bowden R, Wilson DJ, Peto TE, Crook DW. Transforming clinical microbiology with bacterial genome sequencing. Nat Rev Genet. 2012;13(9):601-12. http://dx.doi.org/10.1038/nrg3226 PMID:22868263
-
(2012)
Nat Rev Genet
, vol.13
, Issue.9
, pp. 601-612
-
-
Didelot, X.1
Bowden, R.2
Wilson, D.J.3
Peto, T.E.4
Crook, D.W.5
-
8
-
-
43149115851
-
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
-
PMID:18349386
-
Zerbino DR, Birney E. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 2008;18(5):821-9. http://dx.doi.org/10.1101/gr.074492.107 PMID:18349386
-
(2008)
Genome Res
, vol.18
, Issue.5
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
9
-
-
85181430864
-
-
Ridom SpaServer. [Accessed 5 Dec 2013]
-
Ridom SpaServer. [Accessed 5 Dec 2013]. Available from: http:www.spaserver.ridom.de/
-
-
-
-
10
-
-
85181420880
-
-
Multi Locus Sequence Typing (MLST), [Accessed 5 Dec 2013]
-
Multi Locus Sequence Typing (MLST). [Accessed 5 Dec 2013]. Available from: http:www.mlst.net/
-
-
-
-
11
-
-
30744470609
-
Application of phylogenetic networks in evolutionary studies
-
PMID:16221896
-
Huson DH, Bryant D. Application of phylogenetic networks in evolutionary studies. Mol Biol Evol. 2006;23(2):254-67. http://dx.doi.org/10.1093/molbev/msj030 PMID:16221896
-
(2006)
Mol Biol Evol
, vol.23
, Issue.2
, pp. 254-267
-
-
Huson, D.H.1
Bryant, D.2
-
12
-
-
85181424619
-
-
FigTree. [Accessed 5 Dec 2013]
-
FigTree. [Accessed 5 Dec 2013]. Available from: http:tree.bio.ed.ac.uk/software/figtree/
-
-
-
-
13
-
-
79953758073
-
A field guide to pandemic, epidemic and sporadic clones of methicillin-resistant Staphylococcus aureus
-
PMID:21494333
-
Monecke S, Coombs G, Shore AC, Coleman DC, Akpaka P, Borg M, et al. A field guide to pandemic, epidemic and sporadic clones of methicillin-resistant Staphylococcus aureus. PLoS ONE. 2011;6(4):e17936. http://dx.doi.org/10.1371/journal.pone.0017936 PMID:21494333
-
(2011)
Plos ONE
, vol.6
, Issue.4
-
-
Monecke, S.1
Coombs, G.2
Shore, A.C.3
Coleman, D.C.4
Akpaka, P.5
Borg, M.6
-
14
-
-
35548946725
-
Rapid increase of genetically diverse methicillin-resistant Staphylococcus aureus, Copenhagen, Denmark
-
PMID:18258003
-
Bartels MD, Boye K, Rhod Larsen A, Skov R, Westh H. Rapid increase of genetically diverse methicillin-resistant Staphylococcus aureus, Copenhagen, Denmark. Emerg Infect Dis. 2007;13(10):1533-40. http://dx.doi.org/10.3201/eid1310.070503 PMID:18258003
-
(2007)
Emerg Infect Dis
, vol.13
, Issue.10
, pp. 1533-1540
-
-
Bartels, M.D.1
Boye, K.2
Rhod Larsen, A.3
Skov, R.4
Westh, H.5
-
15
-
-
52249103540
-
Danish CA-MRSA Study Group. Methicillin-resistant Staphylococcus aureus: Risk factors associated with community-onset infections in Denmark
-
PMID:18752595
-
Böcher S, Gervelmeyer A, Monnet DL, Mølbak K, Skov RL; Danish CA-MRSA Study Group. Methicillin-resistant Staphylococcus aureus: risk factors associated with community-onset infections in Denmark. Clin Microbiol Infect. 2008;14(10):942-8. http://dx.doi.org/10.1111/j.1469-0691.2008.02055.x PMID:18752595
-
(2008)
Clin Microbiol Infect
, vol.14
, Issue.10
, pp. 942-948
-
-
Böcher, S.1
Gervelmeyer, A.2
Monnet, D.L.3
Mølbak, K.4
Skov, R.L.5
-
16
-
-
84872515273
-
Whole-genome sequencing for analysis of an outbreak of meticillin-resistant Staphylococcus aureus: A descriptive study
-
PMID:23158674
-
Harris SR, Cartwright EJ, Török ME, Holden MT, Brown NM, Ogilvy-Stuart AL, et al. Whole-genome sequencing for analysis of an outbreak of meticillin-resistant Staphylococcus aureus: a descriptive study. Lancet Infect Dis. 2013;13(2):130-6. http://dx.doi.org/10.1016/S1473-3099(12)70268-2 PMID:23158674
-
(2013)
Lancet Infect Dis
, vol.13
, Issue.2
, pp. 130-136
-
-
Harris, S.R.1
Cartwright, E.J.2
Török, M.E.3
Holden, M.T.4
Brown, N.M.5
Ogilvy-Stuart, A.L.6
-
17
-
-
84862199752
-
Rapid whole-genome sequencing for investigation of a neonatal MRSA outbreak
-
PMID:22693998
-
Köser CU, Holden MT, Ellington MJ, Cartwright EJ, Brown NM, Ogilvy-Stuart AL, et al. Rapid whole-genome sequencing for investigation of a neonatal MRSA outbreak. N Engl J Med. 2012;366(24):2267-75. http://dx.doi.org/10.1056/NEJMoa1109910 PMID:22693998
-
(2012)
N Engl J Med
, vol.366
, Issue.24
, pp. 2267-2275
-
-
Köser, C.U.1
Holden, M.T.2
Ellington, M.J.3
Cartwright, E.J.4
Brown, N.M.5
Ogilvy-Stuart, A.L.6
-
18
-
-
77956129252
-
The search and destroy strategy prevents spread and long-term carriage of methicillin-resistant Staphylococcus aureus: Results from the follow-up screening of a large ST22 (E-MRSA 15) outbreak in Denmark
-
PMID:20041904
-
Böcher S, Skov RL, Knudsen MA, Guardabassi L, Mølbak K, Schouenborg P, et al. The search and destroy strategy prevents spread and long-term carriage of methicillin-resistant Staphylococcus aureus: results from the follow-up screening of a large ST22 (E-MRSA 15) outbreak in Denmark. Clin Microbiol Infect. 2010;16(9):1427-34. http://dx.doi.org/10.1111/j.1469-0691.2010.03137.x PMID:20041904
-
(2010)
Clin Microbiol Infect
, vol.16
, Issue.9
, pp. 1427-1434
-
-
Böcher, S.1
Skov, R.L.2
Knudsen, M.A.3
Guardabassi, L.4
Mølbak, K.5
Schouenborg, P.6
-
19
-
-
84893805397
-
Evolution of Staphylococcus aureus and MRSA during outbreaks
-
PMID:23665384
-
Lindsay JA. Evolution of Staphylococcus aureus and MRSA during outbreaks. Infect Genet Evol. 2014;21:548-53. http://dx.doi.org/10.1016/j.meegid.2013.04.017 PMID:23665384
-
(2014)
Infect Genet Evol
, vol.21
, pp. 548-553
-
-
Lindsay, J.A.1
-
20
-
-
70449642816
-
Two distinct clones of methicillin-resistant Staphylococcus aureus (MRSA) with the same USA300 pulsed-field gel electrophoresis profile: A potential pitfall for identification of USA300 community-associated MRSA
-
PMID:19759225
-
Larsen AR, Goering R, Stegger M, Lindsay JA, Gould KA, Hinds J, et al. Two distinct clones of methicillin-resistant Staphylococcus aureus (MRSA) with the same USA300 pulsed-field gel electrophoresis profile: a potential pitfall for identification of USA300 community-associated MRSA. J Clin Microbiol. 2009;47(11):3765-8. http://dx.doi.org/10.1128/JCM.00934-09 PMID:19759225
-
(2009)
J Clin Microbiol
, vol.47
, Issue.11
, pp. 3765-3768
-
-
Larsen, A.R.1
Goering, R.2
Stegger, M.3
Lindsay, J.A.4
Gould, K.A.5
Hinds, J.6
|