Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
Birney, E. et al. (2007) Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature 447, 799-816.
A quantitative model of transcriptional regulation reveals the influence of binding location on expression
MacIsaac, K.D. et al. (2010) A quantitative model of transcriptional regulation reveals the influence of binding location on expression. PLoS Comput. Biol., 6, e1000773.
Simultaneous reconstruction of multiple signaling pathways via the prize-collecting Steiner forest problem
Tuncbag, N. et al. (2013) Simultaneous reconstruction of multiple signaling pathways via the prize-collecting Steiner forest problem. J. Comput. Biol., 20, 124-136.
SteinerNet: A web server for integrating "omic" data to discover hidden components of response pathways
Tuncbag, N. et al. (2012) SteinerNet: a web server for integrating "omic" data to discover hidden components of response pathways. Nucleic Acids Res., 40, W505-W509.
Bridging high-throughput genetic and transcriptional data reveals cellular responses to alpha-synuclein toxicity
Yeger-Lotem, E. et al. (2009) Bridging high-throughput genetic and transcriptional data reveals cellular responses to alpha-synuclein toxicity. Nat. Genet., 41, 316-323.