-
1
-
-
34547677806
-
Bayesian estimation of concordance among gene trees
-
Ane, C. et al. (2007) Bayesian estimation of concordance among gene trees. Mol. Biol. Evol, 24, 1575.
-
(2007)
Mol. Biol. Evol
, vol.24
, pp. 1575
-
-
Ane, C.1
-
2
-
-
84873326063
-
Genome-scale coestimation of species and gene trees
-
Boussau, B. et al. (2012) Genome-scale coestimation of species and gene trees. Genome Res., 23, 323-330.
-
(2012)
Genome Res.
, vol.23
, pp. 323-330
-
-
Boussau, B.1
-
3
-
-
78549247493
-
IGTP: A software package for large-scale gene tree parsimony analysis
-
Chaudhary, R. et al. (2010) iGTP: A software package for large-scale gene tree parsimony analysis. BMC Bioinformatics, 11, 574.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 574
-
-
Chaudhary, R.1
-
4
-
-
84861495534
-
Fast local search for unrooted Robinson-Foulds super-trees
-
Chaudhary, R. et al. (2012) Fast local search for unrooted Robinson-Foulds super-trees. IEEE/ACM Trans. Comput. Biol. Bioinform., 9, 1004-1013.
-
(2012)
IEEE/ACM Trans. Comput. Biol. Bioinform.
, vol.9
, pp. 1004-1013
-
-
Chaudhary, R.1
-
5
-
-
84886742407
-
Inferring species trees from incongruent multi-copy gene trees using the Robinson-Foulds distance
-
Chaudhary, R. et al. (2013) Inferring species trees from incongruent multi-copy gene trees using the Robinson-Foulds distance. Algorithms Mol. Biol., 28, 8.
-
(2013)
Algorithms Mol. Biol.
, vol.28
, pp. 8
-
-
Chaudhary, R.1
-
7
-
-
77950806408
-
New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0
-
Guindon, S. et al. (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst. Biol., 59, 307-321.
-
(2010)
Syst. Biol.
, vol.59
, pp. 307-321
-
-
Guindon, S.1
-
8
-
-
77249086587
-
Bayesian inference of species trees from multi-locus data
-
Heled, J. and Drummond, AJ. (2010) Bayesian inference of species trees from multi-locus data. J. Mol. Biol. Evol., 27, 570-580.
-
(2010)
J. Mol. Biol. Evol.
, vol.27
, pp. 570-580
-
-
Heled, J.1
Drummond, A.J.2
-
9
-
-
63549118031
-
STEM: Species tree estimation using maximum likelihood for gene trees under coalescence
-
Kubatko, L.S. et al. (2009) STEM: species tree estimation using maximum likelihood for gene trees under coalescence. Bioinformatics, 25, 971-973.
-
(2009)
Bioinformatics
, vol.25
, pp. 971-973
-
-
Kubatko, L.S.1
-
10
-
-
34548575126
-
Species trees from gene trees: Reconstructing bayesian posterior distributions of a species phylogeny using estimated gene tree distributions
-
Liu, L. and Pearl, D.K. (2007) Species trees from gene trees: reconstructing bayesian posterior distributions of a species phylogeny using estimated gene tree distributions. Syst. Biol., 56, 504-514.
-
(2007)
Syst. Biol.
, vol.56
, pp. 504-514
-
-
Liu, L.1
Pearl, D.K.2
-
11
-
-
77957686501
-
A maximum pseudo-likelihood approach for estimating species trees under the coalescent model
-
Liu, L. et al. (2010) A maximum pseudo-likelihood approach for estimating species trees under the coalescent model. BMC Evol. Biol., 10, 302.
-
(2010)
BMC Evol. Biol.
, vol.10
, pp. 302
-
-
Liu, L.1
-
12
-
-
0031504952
-
Gene trees in species trees
-
Maddison, W.P. (1997) Gene trees in species trees. Syst. Biol., 46, 523-536.
-
(1997)
Syst. Biol.
, vol.46
, pp. 523-536
-
-
Maddison, W.P.1
-
13
-
-
84859530730
-
Ultraconserved elements are novel phylogenomic markers that resolve placental mammal phylogeny when combined with species-tree analysis
-
McCormack, J.E. et al. (2012) Ultraconserved elements are novel phylogenomic markers that resolve placental mammal phylogeny when combined with species-tree analysis. Genome Res., 22, 746-754.
-
(2012)
Genome Res.
, vol.22
, pp. 746-754
-
-
McCormack, J.E.1
-
14
-
-
84863086549
-
Resolution of the laurasiatherian phylogeny: Evidence from genomic data
-
Nery, M.F. et al. (2012) Resolution of the laurasiatherian phylogeny: evidence from genomic data. Mol. Phylogenet. Evol., 64, 685-689.
-
(2012)
Mol. Phylogenet. Evol.
, vol.64
, pp. 685-689
-
-
Nery, M.F.1
-
15
-
-
0031774059
-
GeneTree: Comparing gene and species phylogenies using reconciled trees
-
Page, R.D.M. (1998) GeneTree: comparing gene and species phylogenies using reconciled trees. Bioinformatics, 14, 819-820.
-
(1998)
Bioinformatics
, vol.14
, pp. 819-820
-
-
Page, R.D.M.1
-
16
-
-
0019424782
-
Comparison of phylogenetic trees
-
Robinson, D.F. and Foulds, L.R. (1981) Comparison of phylogenetic trees. Math. Biosci., 53, 131-147.
-
(1981)
Math. Biosci.
, vol.53
, pp. 131-147
-
-
Robinson, D.F.1
Foulds, L.R.2
-
17
-
-
84902492013
-
Supertrees based on the subtree prune-and-regraft distance
-
Whidden, C. et al. (2014) Supertrees based on the subtree prune-and-regraft distance. Syst. Biol., 63, 566-581.
-
(2014)
Syst. Biol.
, vol.63
, pp. 566-581
-
-
Whidden, C.1
-
18
-
-
79953207304
-
Algorithms for MDC-based multi-locus phylogeny inference
-
Springer
-
Yu, Y. et al. (2011) Algorithms for MDC-based multi-locus phylogeny inference. In: RECOMB 2011. Springer, pp. 531-545.
-
(2011)
RECOMB 2011
, pp. 531-545
-
-
Yu, Y.1
-
19
-
-
0035025126
-
ATV: Display and manipulation of annotated phylogenetic trees
-
Zmasek, C.M. and Eddy, S.R. (2001) ATV: display and manipulation of annotated phylogenetic trees. Bioinformatics, 17, 383-384.
-
(2001)
Bioinformatics
, vol.17
, pp. 383-384
-
-
Zmasek, C.M.1
Eddy, S.R.2
|