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Volumn 31, Issue 2, 2015, Pages 268-270

A Python package for parsing, validating, mapping and formatting sequence variants using HGVS nomenclature

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGY; FACTUAL DATABASE; GENETIC VARIATION; GENETICS; HUMAN; HUMAN GENOME; MOLECULAR GENETICS; NOMENCLATURE; PROCEDURES; SOFTWARE;

EID: 84928990715     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btu630     Document Type: Article
Times cited : (31)

References (9)
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  • 3
    • 84880535720 scopus 로고    scopus 로고
    • ACMG recommendations for reporting of incidental findings in clinical exome and genome sequencing
    • Green, R.C. et al. (2013) ACMG recommendations for reporting of incidental findings in clinical exome and genome sequencing. Genet. Med., 15, 565-574.
    • (2013) Genet. Med. , vol.15 , pp. 565-574
    • Green, R.C.1
  • 4
    • 46649115430 scopus 로고    scopus 로고
    • Splign: Algorithms for computing spliced alignments with identification of paralogs
    • Kapustin, Y. et al. (2008) Splign: algorithms for computing spliced alignments with identification of paralogs. Biol. Direct, 3, 20.
    • (2008) Biol. Direct , vol.3 , pp. 20
    • Kapustin, Y.1
  • 5
    • 0036226603 scopus 로고    scopus 로고
    • BLAT-The BLAST-like alignment tool
    • Kent, W.J. (2002) BLAT-the BLAST-like alignment tool. Genome Res., 12, 656-664.
    • (2002) Genome Res. , vol.12 , pp. 656-664
    • Kent, W.J.1
  • 6
    • 79959934453 scopus 로고    scopus 로고
    • A formalized description of the standard human variant nomenclature in Extended Backus-Naur Form
    • Laros, J.F.J. et al. (2011) A formalized description of the standard human variant nomenclature in Extended Backus-Naur Form. BMC Bioinformatics, 12 (Suppl 4), S5.
    • (2011) BMC Bioinformatics , vol.12 , pp. S5
    • Laros, J.F.J.1
  • 7
    • 77955405475 scopus 로고    scopus 로고
    • Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor
    • Mclaren, W. et al. (2010) Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor. Bioinformatics, 26, 1-2.
    • (2010) Bioinformatics , vol.26 , pp. 1-2
    • McLaren, W.1
  • 8
    • 79955001682 scopus 로고    scopus 로고
    • Describing structural changes by extending HGVS sequence variation nomenclature
    • Taschner, P.E.M. and den Dunnen, J.T. (2011) Describing structural changes by extending HGVS sequence variation nomenclature. Hum. Mutat., 32, 507-511.
    • (2011) Hum. Mutat. , vol.32 , pp. 507-511
    • Taschner, P.E.M.1    Den Dunnen, J.T.2
  • 9
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    • Improving sequence variant descriptions in mutation databases and literature using the mutalyzer sequence variation nomenclature checker
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    • Wildeman, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.