PFP/ESG: Automated protein function prediction servers enhanced with Gene Ontology visualization tool

Bioinformatics

Volumn 31, Issue 2, 2015, Pages 271-272

  Khan, Ishita K ^a   Wei, Qing ^a   Chitale, Meghana ^a   Kihara, Daisuke ^a,b  

^a Purdue University   (United States)

^b PURDUE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN;

ALGORITHM; BIOLOGY; COMPUTER GRAPHICS; GENE ONTOLOGY; HUMAN; METABOLISM; MOLECULAR GENETICS; PROCEDURES; PROTEIN DATABASE; SEQUENCE ANALYSIS;

ALGORITHMS; COMPUTATIONAL BIOLOGY; COMPUTER GRAPHICS; DATABASES, PROTEIN; GENE ONTOLOGY; HUMANS; MOLECULAR SEQUENCE ANNOTATION; PROTEINS; SEQUENCE ANALYSIS, PROTEIN;

EID: 84928988704     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btu646     Document Type: Article

References (6)

1. Altschul, S.F. et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402.
2. Chitale, M. et al. (2009) ESG: extended similarity group method for automated protein function prediction. Bioinformatics, 25, 1739-1745.
3. Hawkins, T. et al. (2006) Enhanced automated function prediction using distantly related sequences and contextual association by PFP. Protein Sci., 15, 1550-1556.
4. Hawkins, T. et al. (2009) PFP: automated prediction of Gene Ontology functional annotations with confidence scores using protein sequence data. Proteins, 74, 566-582.
5. Lopez, G. et al. (2007) Assessment of predictions submitted for the CASP7 function prediction category. Proteins, 69, 165-174.
6. Radivojac, P. et al. (2013) A large-scale evaluation of computational protein function prediction. Nat. Meth., 10, 221-227.