메뉴 건너뛰기




Volumn 31, Issue 2, 2015, Pages 282-283

Shiny-phyloseq: Web application for interactive microbiome analysis with provenance tracking

Author keywords

[No Author keywords available]

Indexed keywords

COMPUTER GRAPHICS; HUMAN; MICROFLORA; PHYLOGENY; SOFTWARE; STATISTICAL ANALYSIS; WEB BROWSER;

EID: 84928987348     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btu616     Document Type: Article
Times cited : (117)

References (16)
  • 2
    • 77958471357 scopus 로고    scopus 로고
    • Differential expression analysis for sequence count data
    • Anders, S. and Huber, W. (2010) Differential expression analysis for sequence count data. Genome Biol., 11, R106.
    • (2010) Genome Biol. , vol.11 , pp. R106
    • Anders, S.1    Huber, W.2
  • 3
    • 80052121849 scopus 로고    scopus 로고
    • CloVR: A virtual machine for automated and portable sequence analysis from the desktop using cloud computing
    • Angiuoli, S.V. et al. (2011) CloVR: a virtual machine for automated and portable sequence analysis from the desktop using cloud computing. BMC Bioinformatics, 12, 356.
    • (2011) BMC Bioinformatics , vol.12 , pp. 356
    • Angiuoli, S.V.1
  • 4
  • 5
    • 77952243141 scopus 로고    scopus 로고
    • QIIME allows analysis of high-throughput community sequencing data
    • Caporaso, J. et al. (2010) QIIME allows analysis of high-throughput community sequencing data. Nat. Methods, 7, 335-336.
    • (2010) Nat. Methods , vol.7 , pp. 335-336
    • Caporaso, J.1
  • 6
    • 85023626433 scopus 로고    scopus 로고
    • D3Network: Tools for Creating D3 JavaScript Network and Tree Graphs from R
    • Gandrud, C. (2014) d3Network: Tools for Creating D3 JavaScript Network and Tree Graphs from R. CRAN.
    • (2014) CRAN
    • Gandrud, C.1
  • 7
    • 73449128271 scopus 로고    scopus 로고
    • Fast UniFrac: Facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data
    • Hamady, M. et al. (2009) Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data. ISME J., 4, 17-27.
    • (2009) ISME J. , vol.4 , pp. 17-27
    • Hamady, M.1
  • 8
    • 84868270724 scopus 로고    scopus 로고
    • The Biological Observation Matrix (BIOM) format or: How i learned to stop worrying and love the ome-ome
    • McDonald, D. et al. (2012) The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome. Gigascience, 1, 7.
    • (2012) Gigascience , vol.1 , pp. 7
    • McDonald, D.1
  • 9
    • 84876427223 scopus 로고    scopus 로고
    • Phyloseq: An R package for reproducible interactive analysis and graphics of microbiome census data
    • McMurdie, P.J. and Holmes, S. (2013) phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data. PLoS One, 8, e61217.
    • (2013) PLoS One , vol.8 , pp. e61217
    • McMurdie, P.J.1    Holmes, S.2
  • 10
    • 84901363655 scopus 로고    scopus 로고
    • Waste not, want not: Why rarefying micro-biome data is inadmissible
    • McMurdie, P.J. and Holmes, S. (2014) Waste not, want not: why rarefying micro-biome data is inadmissible. PLoS Comput. Biol., 10, e1003531.
    • (2014) PLoS Comput. Biol. , vol.10 , pp. e1003531
    • McMurdie, P.J.1    Holmes, S.2
  • 11
    • 53549118607 scopus 로고    scopus 로고
    • The metagenomics RAST server-A public resource for the automatic phylogenetic and functional analysis of metagenomes
    • Meyer, F. et al. (2008) The metagenomics RAST server-A public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC Bioinformatics, 9, 386.
    • (2008) BMC Bioinformatics , vol.9 , pp. 386
    • Meyer, F.1
  • 12
    • 1042304216 scopus 로고    scopus 로고
    • APE: Analyses of phylogenetics and evolution in R language
    • Paradis, E. et al. (2004) APE: analyses of phylogenetics and evolution in R language. Bioinformatics, 20, 289-290.
    • (2004) Bioinformatics , vol.20 , pp. 289-290
    • Paradis, E.1
  • 13
    • 82755174123 scopus 로고    scopus 로고
    • Reproducible research in computational science
    • Peng, R.D. (2011) Reproducible research in computational science. Science, 334, 1226-1227.
    • (2011) Science , vol.334 , pp. 1226-1227
    • Peng, R.D.1
  • 14
    • 84928981578 scopus 로고    scopus 로고
    • Comprehensive R Archive Network (CRAN)
    • R Development Core Team. (2014) Writing R Extensions. Comprehensive R Archive Network (CRAN).
    • (2014) Writing R Extensions


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.