PALMsiever: A tool to turn raw data into results for single-molecule localization microscopy

Bioinformatics

Volumn 31, Issue 5, 2015, Pages 797-798

  Pengo, Thomas ^a   Holden, Seamus J ^b   Manley, Suliana ^b  

^a CENTRE FOR GENOMIC REGULATION CRG   (Spain)

^b Inst Quant Electron and Photonics   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; CLUSTER ANALYSIS; COMPUTER ASSISTED DIAGNOSIS; COMPUTER GRAPHICS; COMPUTER INTERFACE; HUMAN; MICROSCOPY; MICROTUBULE; PROCEDURES; SOFTWARE; ULTRASTRUCTURE;

ALGORITHMS; CLUSTER ANALYSIS; COMPUTER GRAPHICS; HUMANS; IMAGE INTERPRETATION, COMPUTER-ASSISTED; MICROSCOPY; MICROTUBULES; SOFTWARE; USER-COMPUTER INTERFACE;

EID: 84928986930     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btu720     Document Type: Article

References (16)

1. Baddeley, D. et al. (2010) Visualization of localization microscopy data, Microsc. Microanal. Off. J. Microsc. Soc. Am. Microbeam Anal. Soc. Microsc. Soc. Can., 16, 64-72.
2. Betzig, E. et al. (2006) Imaging intracellular fluorescent proteins at nanometer resolution. Science, 313, 1642-1645.
3. Botev, Z.I. et al. (2010) Kernel density estimation via diffusion. Ann. Stat. 2010, 38, 2916-2957.
4. El Beheiry, M. and Dahan, M. (2013) ViSP: representing single-particle localizations in three dimensions. Nat. Methods, 10, 689-690.
5. Endesfelder, U. et al. (2013) Multiscale spatial organization of RNA polymer-ase in Escherichia coli. Biophys. J., 105, 172-181.
6. Ester, M.K., et al. (1996) A density-based algorithm for discovering clusters in large spatial databases with noise. In Proceedings of the Second International Conference on Knowledge Discovery and Data Mining, AAAI Press.
7. Gunzenhauser, J. et al. (2012) Quantitative super-resolution imaging reveals protein stoichiometry and nanoscale morphology of assembling HIV-Gag virions. Nano Lett., 12, 4705-4710.
8. Henriques, R. et al. (2010) QuickPALM: 3D real-time photoactivation nano-scopy image processing in ImageJ. Nat. Methods, 7, 339-340.
9. Jaqaman, K. et al. (2008) Robust single-particle tracking in live-cell time-lapse sequences. Nat. Methods, 5, 695-702.
10. Niu, L. and Yu, J. (2008) Investigating intracellular dynamics of FtsZ cytoskel-eton with photoactivation single-molecule tracking. Biophys. J., 95, 2009-2016.
11. Olivier, N. et al. (2013) Resolution doubling in 3D-STORM imaging through improved buffers. PLoS One, 8, e69004.
12. Ovesny, M. et al. (2014) ThunderSTORM: a comprehensive ImageJ plug-in for PALM and STORM data analysis and super-resolution imaging. Bioinformatics, 30, 2389-2390.
13. Patterson, G. et al. (2010) Superresolution imaging using single-molecule localization. Annu. Rev. Phys. Chem., 61, 345-367.
14. Pengo, T. and Manley, S. (2012) Software for the visualization and analysis of super-resolution localization microscopy data. In SSMLMS 2012, Aug 29-31 2012, Lausanne, Swizterland.
15. Rust, M.J. et al. (2006) Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM). Nat. Methods, 3, 793-795.
16. Wolter, S. et al. (2012) rapidSTORM: accurate, fast open-source software for localization microscopy. Nat. Methods, 9, 1040-1041.