CIDRE: An illumination-correction method for optical microscopy

Nature Methods

Volumn 12, Issue 5, 2015, Pages 404-406

  Smith, Kevin ^a   Li, Yunpeng ^b   Piccinini, Filippo ^c   Csucs, Gabor ^a   Balazs, Csaba ^a   Bevilacqua, Alessandro ^c   Horvath, Peter ^a,d,e  

^a ETH ZURICH   (Switzerland)

^b EPFL   (Switzerland)

^c UNIVERSITY OF BOLOGNA   (Italy)

^d INSTITUTE OF BIOCHEMISTRY   (Hungary)

^e UNIVERSITY OF HELSINKI   (Finland)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CORRECTED INTENSITY DISTRIBUTIONS USING REGULARIZED ENERGY MINIMIZATION; ENERGY; GOLD STANDARD; ILLUMINATION; IMAGE DISPLAY; IMAGE PROCESSING; LIGHT; MICROSCOPY; PRIORITY JOURNAL; PROSPECTIVE STUDY; COMPUTER PROGRAM; PROCEDURES;

IMAGE PROCESSING, COMPUTER-ASSISTED; LIGHT; MICROSCOPY; SOFTWARE;

EID: 84928923564     PISSN: 15487091     EISSN: 15487105     Source Type: Journal    
DOI: 10.1038/nmeth.3323     Document Type: Article

References (17)

1. Goldman, D.B. IEEE Trans. Pattern Anal. Mach. Intell. 32, 2276-2288 (2010).
2. Carpenter, A.E. et al. Genome Biol. 7, R100 (2006).
3. Young, I.T. Curr. Protoc. Cytom. 14, 2.11 (2001).
4. Model, M. Curr. Protoc. Cytom. 68, 10.14 (2014).
5. Ljosa, V. & Carpenter, A.E. PLoS Comput. Biol. 5, e1000603 (2009).
6. Shariff, A., Kangas, J., Coelho, L.P., Quinn, S. & Murphy, R.F. J. Biomol. Screen. 15, 726-734 (2010).
7. Ray, S.F. Applied Photographic Optics 3rd edn. (Focal, 2002).
8. Varga, V.S. et al. Cytometry A 60, 53-62 (2004).
9. Sigal, A. et al. Nat. Methods 3, 525-531 (2006).
10. Can, A. et al. in Proc. IEEE Int. Symp. Biomed. Imaging 288-291 (IEEE, 2008).
11. Schwarzfischer, M. et al. in Micro. Image Anal. Appl. Biol. (MIAAB, Heidelberg, Germany, 2011).
12. Sternberg, S.R. Computer 16, 22-34 (1983).
13. Leong, F.J., Brady, M. & McGee, J.O. J. Clin. Pathol. 56, 619-621 (2003).
14. Babaloukas, G., Tentolouris, N., Liatis, S., Sklavounou, A. & Perrea, D. J. Microsc. 244, 320-324 (2011).
15. Olsen, D. et al. Remote Sens. 2, 464-477 (2010).
16. Guizar-Sicairos, M., Thurman, S.T. & Fienup, J.R. Opt. Lett. 33, 156-158 (2008).
17. Liu, D.C. & Nocedal, J. Math. Program. 45, 503-528 (1989).