-
1
-
-
30444458666
-
Predicting microbial species richness
-
Hong S-H, Bunge J, Jeon S-O, Epstein SS. 2006 Predicting microbial species richness. Proc. Natl Acad. Sci. USA 103, 117–122. (doi:10.1073/pnas.0507245102)
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 117-122
-
-
Hong, S.-H.1
Bunge, J.2
Jeon, S.-O.3
Epstein, S.S.4
-
3
-
-
32944466887
-
Ecological and evolutionary forces shaping microbial diversity in the human intestine
-
Ley RE, Peterson DA, Gordon JI. 2006 Ecological and evolutionary forces shaping microbial diversity in the human intestine. Cell 124, 837–848. (doi:10.1016/j.cell.2006.02.017)
-
(2006)
Cell
, vol.124
, pp. 837-848
-
-
Ley, R.E.1
Peterson, D.A.2
Gordon, J.I.3
-
4
-
-
84885605619
-
Sources of antimicrobial resistance
-
Woolhouse ME, Ward MJ. 2013 Sources of antimicrobial resistance. Science 341, 1460–1461. (doi:10.1126/science.1243444)
-
(2013)
Science
, vol.341
, pp. 1460-1461
-
-
Woolhouse, M.E.1
Ward, M.J.2
-
5
-
-
69549086653
-
Functional characterization of the antibiotic resistance reservoir in the human microflora
-
Sommer MOA, Dantas G, Church GM. 2009 Functional characterization of the antibiotic resistance reservoir in the human microflora. Science 325, 1128–1131. (doi:10.1126/science.1176950)
-
(2009)
Science
, vol.325
, pp. 1128-1131
-
-
Sommer, M.1
Dantas, G.2
Church, G.M.3
-
7
-
-
35748929920
-
Expanding the soil antibiotic resistome: Exploring environmental diversity
-
D’Costa VM, Griffiths E, Wright GD. 2007 Expanding the soil antibiotic resistome: exploring environmental diversity. Curr. Opin. Microbiol. 10, 481–489. (doi:10.1016/j.mib.2007.08.009)
-
(2007)
Curr. Opin. Microbiol
, vol.10
, pp. 481-489
-
-
D’Costa, V.M.1
Griffiths, E.2
Wright, G.D.3
-
8
-
-
80053130409
-
Antibiotic resistance is ancient
-
D’Costa VM et al. 2011 Antibiotic resistance is ancient. Nature 477, 457–461. (doi:10.1038/nature10388)
-
(2011)
Nature
, vol.477
, pp. 457-461
-
-
D’Costa, V.M.1
-
9
-
-
84865531061
-
The shared antibiotic resistome of soil bacteria and human pathogens
-
Fosberg KJ, Reyes A, Wang B, Selleck EM, Sommer MOA, Danta G. 2012 The shared antibiotic resistome of soil bacteria and human pathogens. Science 337, 1107–1111. (doi:10.1126/science.1220761)
-
(2012)
Science
, vol.337
, pp. 1107-1111
-
-
Fosberg, K.J.1
Reyes, A.2
Wang, B.3
Selleck, E.M.4
Sommer, M.5
Danta, G.6
-
11
-
-
84864033332
-
-
OIE, OIE_list_antimicrobials.pdf (accessed 17 July 2013)
-
OIE. 2007 List of antimicrobials of veterinary importance. http://www.oie.int/fileadmin/Home/ eng/Internationa_Standard_Setting/docs/pdf/ OIE_list_antimicrobials.pdf (accessed 17 July 2013).
-
(2007)
List of Antimicrobials of Veterinary Importance
-
-
-
12
-
-
0019294338
-
Effects of dietary inclusion of copper and(Or) antibiotics on the performance of weanling pigs
-
Stahly TS, Cromwell GL, Monegue HJ. 1980 Effects of dietary inclusion of copper and(or) antibiotics on the performance of weanling pigs. J. Anim. Sci. 51, 1347–1351.
-
(1980)
J. Anim. Sci
, vol.51
, pp. 1347-1351
-
-
Stahly, T.S.1
Cromwell, G.L.2
Monegue, H.J.3
-
13
-
-
84865477413
-
Antibiotics in early life alter the murine colonic microbiome and adiposity
-
Cho I et al. 2012 Antibiotics in early life alter the murine colonic microbiome and adiposity. Nature 488, 621–626. (doi:10.1038/nature11400)
-
(2012)
Nature
, vol.488
, pp. 621-626
-
-
Cho, I.1
-
14
-
-
84899033510
-
The impact of antibiotics on growth in children in low and middle income countries: Systematic review and meta-analysis ofrandomised controlled trials
-
Gough EK et al. 2014 The impact of antibiotics on growth in children in low and middle income countries: systematic review and meta-analysis ofrandomised controlled trials. Br. Med. J. 348, g2267. (doi:10.1136/bmj.g2267)
-
(2014)
Br. Med. J
, vol.2267
, pp. 348
-
-
Gough, E.K.1
-
15
-
-
84887627398
-
Antibiotic resistance: The need for global solutions
-
Laxminarayan R et al. 2013 Antibiotic resistance: the need for global solutions. Lancet Infect. Dis. 13, 1057–1098. (doi:10.1016/S1473-3099(13)70318-9)
-
(2013)
Lancet Infect. Dis
, vol.13
, pp. 1057-1098
-
-
Laxminarayan, R.1
-
16
-
-
77956631099
-
Changes in the use of antimicrobials and the effects on productivity of swine farms in Denmark
-
Aarestrup FM, Jensen VF, Emborg H-D, Jacobsen E, Wegener HC. 2010 Changes in the use of antimicrobials and the effects on productivity of swine farms in Denmark. Am. J. Vet. Res. 71, 726–733. (doi:10.2460/ajvr.71.7.726)
-
(2010)
Am. J. Vet. Res
, vol.71
, pp. 726-733
-
-
Aarestrup, F.M.1
Jensen, V.F.2
Emborg, H.-D.3
Jacobsen, E.4
Wegener, H.C.5
-
17
-
-
2442682928
-
Acquisition and epidemiology of antibiotic-resistant Escherichia coli in a cohort of newborn calves
-
Hoyle DV, Knight HI, Shaw DJ, Hillman K, Pearce MC, Low JC, Gunn GJ, Woolhouse MEJ. 2004 Acquisition and epidemiology of antibiotic-resistant Escherichia coli in a cohort of newborn calves. J. Antimicrob. Chemother. 53, 867–871. (doi:10.1093/jac/dkh177)
-
(2004)
J. Antimicrob. Chemother
, vol.53
, pp. 867-871
-
-
Hoyle, D.V.1
Knight, H.I.2
Shaw, D.J.3
Hillman, K.4
Pearce, M.C.5
Low, J.C.6
Gunn, G.J.7
Woolhouse, M.8
-
18
-
-
8744245236
-
Agerelated decline in carriage of ampicillin-resistant Escherichia coli in young calves. Appl. Environ
-
Hoyle DV, Shaw DJ, Knight HI, Davison HC, Pearce MC, Low JC, Gunn GJ, Woolhouse MEJ. 2004 Agerelated decline in carriage of ampicillin-resistant Escherichia coli in young calves. Appl. Environ. Microbiol. 70, 6927–6930. (doi:10.1128/AEM.70.11.6927-6930.2004)
-
(2004)
Microbiol
, vol.70
, pp. 6927-6930
-
-
Hoyle, D.V.1
Shaw, D.J.2
Knight, H.I.3
Davison, H.C.4
Pearce, M.C.5
Low, J.C.6
Gunn, G.J.7
Woolhouse, M.8
-
19
-
-
32044454187
-
Molecular epidemiology of antimicrobialresistant Escherichia coli strains in a cohort of newborn calves
-
Hoyle DV, Yates CM, Chase-Topping ME, Turner EJ, Davies SE, Low JC, Gunn GJ, Woolhouse MEJ, Amyes SGB. 2005 Molecular epidemiology of antimicrobialresistant Escherichia coli strains in a cohort of newborn calves. Appl. Environ. Microbiol. 71, 6680–6688. (doi:10.1128/AEM.71.11.6680-6688.2005)
-
(2005)
Appl. Environ. Microbiol
, vol.71
, pp. 6680-6688
-
-
Hoyle, D.V.1
Yates, C.M.2
Chase-Topping, M.E.3
Turner, E.J.4
Davies, S.E.5
Low, J.C.6
Gunn, G.J.7
Woolhouse, M.8
Amyes, S.9
-
20
-
-
4444330569
-
High frequency transfer and horizontal spread of apramycin resistance in calf faecal Escherichia coli
-
Yates CM, Pearce MC, Woolhouse MEJ, Amyes SGB. 2004 High frequency transfer and horizontal spread of apramycin resistance in calf faecal Escherichia coli. J. Antimicrob. Chemother. 54, 534–537. (doi:10.1093/jac/dkh353)
-
(2004)
J. Antimicrob. Chemother
, vol.54
, pp. 534-537
-
-
Yates, C.M.1
Pearce, M.C.2
Woolhouse, M.3
Amyes, S.4
-
21
-
-
33646885912
-
Molecular characterisation of bovine faecal Escherichia coli shows persistence of defined ampicillin resistant strains and the presence of class 1 integrons on an organic beef farm
-
Hoyle DV, Davison HC, Knight HI, Yates CM, Dobay O, Gunn GJ, Amyes SGB, Woolhouse MEJ. 2006 Molecular characterisation of bovine faecal Escherichia coli shows persistence of defined ampicillin resistant strains and the presence of class 1 integrons on an organic beef farm. Vet. Microbiol. 115, 250–257. (doi:10.1016/j.vetmic.2006.01.006)
-
(2006)
Vet. Microbiol
, vol.115
, pp. 250-257
-
-
Hoyle, D.V.1
Davison, H.C.2
Knight, H.I.3
Yates, C.M.4
Dobay, O.5
Gunn, G.J.6
Amyes, S.7
Woolhouse, M.8
-
22
-
-
84872376819
-
Salmonella enterica subsp. Enterica producing VIM-1 carbapenemase isolated from livestock farms
-
Fischer J, Rodríguez I, Schmoger S, Friese A, Roesler U, Helmuth R, Guerra B. 2012 Salmonella enterica subsp. enterica producing VIM-1 carbapenemase isolated from livestock farms. J. Antimicrob. Chemother. 68, 478–480. (doi:10.1093/jac/dks393)
-
(2012)
J. Antimicrob. Chemother
, vol.68
, pp. 478-480
-
-
Fischer, J.1
Rodríguez, I.2
Schmoger, S.3
Friese, A.4
Roesler, U.5
Helmuth, R.6
Guerra, B.7
-
23
-
-
0032951278
-
Decreased incidence of VanA-type vancomycin-resistant enterococci isolated from poultry meat and from faecal samples of humans in the community after discontinuation of avoparcin usage in animal husbandry
-
Klare I, Badstübner D, Konstable C, Böhme G, Claus H, Witte W. 1999 Decreased incidence of VanA-type vancomycin-resistant enterococci isolated from poultry meat and from faecal samples of humans in the community after discontinuation of avoparcin usage in animal husbandry. Microb. Drug Resist. 5, 53–56. (doi:10.1089/mdr.1999.5.45)
-
(1999)
Microb. Drug Resist
, vol.5
, pp. 53-56
-
-
Klare, I.1
Badstübner, D.2
Konstable, C.3
Böhme, G.4
Claus, H.5
Witte, W.6
-
24
-
-
73349134333
-
Recent human-to-poultry host jump, adaptation, and pandemic spread of Staphylococcus aureus
-
Lowder BV et al. 2009 Recent human-to-poultry host jump, adaptation, and pandemic spread of Staphylococcus aureus. Proc. Natl Acad. Sci. USA 106, 19 545–19 (doi:10.1073/pnas.0909285106)
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, Issue.19
-
-
Lowder, B.V.1
-
25
-
-
84883318952
-
Livestock origin for a human pandemic clone of community associated methicillin-resistant Staphylococcus aureus
-
Spoor LE et al. 2012 Livestock origin for a human pandemic clone of community associated methicillin-resistant Staphylococcus aureus. mBio 4, 1–6. (doi:10.1128/mBio.00356-13)
-
(2012)
Mbio
, vol.4
, pp. 1-6
-
-
Spoor, L.E.1
-
26
-
-
84910109057
-
Time-scaled evolutionary analysis of the transmission and antibiotic resistance dynamics of Staphylococcus aureus CC398
-
Ward M et al. 2014 Time-scaled evolutionary analysis of the transmission and antibiotic resistance dynamics of Staphylococcus aureus CC398. Appl. Environ. Microbiol. 80, 7275–7282. (doi:10.1128/AEM.01777-14)
-
(2014)
Appl. Environ. Microbiol
, vol.80
, pp. 7275-7282
-
-
Ward, M.1
-
27
-
-
84885656011
-
Distinguishable epidemics of multidrug-resistant Salmonella Typhimurium DT104 in different hosts
-
Mather AE et al. 2013 Distinguishable epidemics of multidrug-resistant Salmonella Typhimurium DT104 in different hosts. Science 341, 1514–1517. (doi:10.1126/science.1240578)
-
(2013)
Science
, vol.341
, pp. 1514-1517
-
-
Mather, A.E.1
-
28
-
-
84864530626
-
Bayesian phylogenetics with BEAUti and the BEAST 1.7
-
Drummond AJ, Suchard MA, Xie D, Rambaut A. 2012 Bayesian phylogenetics with BEAUti and the BEAST 1.7. Mol. Biol. Evol. 29, 1969–1973. (doi:10.1093/molbev/mss075)
-
(2012)
Mol. Biol. Evol
, vol.29
, pp. 1969-1973
-
-
Drummond, A.J.1
Suchard, M.A.2
Xie, D.3
Rambaut, A.4
-
29
-
-
70349675664
-
Bayesian phylogeography finds its roots
-
Lemey P, Rambaut A, Drummond AJ, Suchard MA. 2009 Bayesian phylogeography finds its roots. PLoS Comput. Biol. 5, 520. (doi:10.1371/journal.pcbi.1000520)
-
(2009)
Plos Comput. Biol
, vol.5
, pp. 520
-
-
Lemey, P.1
Rambaut, A.2
Drummond, A.J.3
Suchard, M.A.4
-
30
-
-
36749089409
-
Counting labelled transitions in continuous-time Markov models of evolution
-
Minin VN, Suchard MA. 2008 Counting labelled transitions in continuous-time Markov models of evolution. J. Math. Biol. 56, 391–412. (doi:10.1007/s00285-007-0120-8)
-
(2008)
J. Math. Biol
, vol.56
, pp. 391-412
-
-
Minin, V.N.1
Suchard, M.A.2
-
31
-
-
57149091120
-
Fast, accurate and simulation-free stochastic mapping
-
Minin VN, Suchard MA. 2008 Fast, accurate and simulation-free stochastic mapping. Phil. Trans. R. Soc. B 363, 3985–3995. (doi:10.1098/rstb.2008.0176)
-
(2008)
Phil. Trans. R. Soc. B
, vol.363
, pp. 3985-3995
-
-
Minin, V.N.1
Suchard, M.A.2
-
32
-
-
78449237743
-
Phylodynamics and humanmediated dispersal of a zoonotic virus
-
Talbi C et al. 2010 Phylodynamics and humanmediated dispersal of a zoonotic virus. PLoS Pathog. 6, e1001166. (doi:10.1371/journal.ppat.1001166)
-
(2010)
Plos Pathog
, pp. 6
-
-
Talbi, C.1
-
34
-
-
0031687375
-
Resistance to antimicrobial agents used for animal therapy in pathogenic-, zoonotic- and indicator bacteria isolated from different food animals in Denmark: A baseline study for the Danish Integrated Antimicrobial Resistance Monitoring Programme (DANMAP)
-
Aaerstrup FM, Bager F, Jensen NE, Madsen M, Meyling M, Wegener HC. 2009 Resistance to antimicrobial agents used for animal therapy in pathogenic-, zoonotic- and indicator bacteria isolated from different food animals in Denmark: a baseline study for the Danish Integrated Antimicrobial Resistance Monitoring Programme (DANMAP). APMIS 160, 745–770. (doi:10.1111/j.1699-0463.1998.tb00222.x)
-
(2009)
APMIS
, vol.160
, pp. 745-770
-
-
Aaerstrup, F.M.1
Bager, F.2
Jensen, N.E.3
Madsen, M.4
Meyling, M.5
Wegener, H.C.6
-
35
-
-
84928678599
-
-
K Five Year Antimicrobial Resistance Strategy 2013 to 2018. DoH/DEFRA London, (accessed 17 July 2014)
-
United Kingdom Department of Health & DEFRA. 2013 UK Five Year Antimicrobial Resistance Strategy 2013 to 2018. DoH/DEFRA London. https://www.gov.uk/government/uploads/system/uploads/attachment_data/file/244058/20130902_UK_5_year_AMR_strategy.pdf (accessed 17 July 2014).
-
(2013)
United Kingdom Department of Health & DEFRA
-
-
-
36
-
-
48749089377
-
Surveillance Sans Frontie`res: Internet-based emerging infectious disease intelligence and the HealthMap project
-
Brownstein JS, Freifeld CC, Reis BY, Mandl KD. 2008 Surveillance Sans Frontie`res: Internet-based emerging infectious disease intelligence and the HealthMap project. PLoS Med. 5, 151. (doi:10.1371/journal.pmed.0050151)
-
(2008)
Plos Med
, vol.5
, pp. 151
-
-
Brownstein, J.S.1
Freifeld, C.C.2
Reis, B.Y.3
Mandl, K.D.4
-
37
-
-
39749135587
-
Global trends in emerging infectious diseases
-
Jones KE, Patel NG, Levy MA, Storeygard A, Balk D, Gittleman JL, Daszak P. 2008 Global trends in emerging infectious diseases. Nature 451, 990–993. (doi:10.1038/nature06536)
-
(2008)
Nature
, vol.451
, pp. 990-993
-
-
Jones, K.E.1
Patel, N.G.2
Levy, M.A.3
Storeygard, A.4
Balk, D.5
Gittleman, J.L.6
Daszak, P.7
-
38
-
-
79960970304
-
-
Washington, DC: The National Academies Press
-
Keusch GT, Pappaioanou M, Gonza´lez MC, Scott KA, Tsai P. 2009 Sustaining global surveillance and response to emerging zoonotic diseases. Washington, DC: The National Academies Press.
-
(2009)
Sustaining Global Surveillance and Response to Emerging Zoonotic Diseases
-
-
Keusch, G.T.1
Pappaioanou, M.2
Mc, G.3
Scott, K.A.4
Tsai, P.5
-
39
-
-
84884680278
-
Use of collateral sensitivity networks to design drug cycling protocols that avoid resistance development
-
204ra132
-
Imamovic L, Sommer MOA. 2013 Use of collateral sensitivity networks to design drug cycling protocols that avoid resistance development. Sci. Transl. Med. 5, 204ra132. (doi:10.1126/scitranslmed.3006609)
-
(2013)
Sci. Transl. Med
, vol.5
-
-
Imamovic, L.1
Sommer, M.2
-
40
-
-
84875741847
-
A genomic portrait of the emergence, evolution, and global spread of a methicillin-resistant Staphylococcus aureus pandemic
-
Holden MTG et al. 2013 A genomic portrait of the emergence, evolution, and global spread of a methicillin-resistant Staphylococcus aureus pandemic. Genome Res. 23, 653–664. (doi:10.1101/gr.147710.112)
-
(2013)
Genome Res
, vol.23
, pp. 653-664
-
-
Holden, M.1
-
41
-
-
84897134429
-
Prediction of Staphylococcus aureus antimicrobial resistance by whole-genome sequencing
-
Gordon NC et al. 2014 Prediction of Staphylococcus aureus antimicrobial resistance by whole-genome sequencing. J. Clin. Microbiol. 52, 1182–1191. (doi:10.1128/JCM.03117-13)
-
(2014)
J. Clin. Microbiol
, vol.52
, pp. 1182-1191
-
-
Gordon, N.C.1
-
42
-
-
84875259457
-
Treatment, promotion, commotion: Antibioticalternatives in food-producing animals
-
Allen HK, Levine UY, Looft T, Bandrick M, Casey TA. 2013 Treatment, promotion, commotion: antibioticalternatives in food-producing animals. Trends Microbiol. 21, 114–119. (doi:10.1016/j.tim.2012.11.001)
-
(2013)
Trends Microbiol
, vol.21
, pp. 114-119
-
-
Allen, H.K.1
Levine, U.Y.2
Looft, T.3
Bandrick, M.4
Casey, T.A.5
-
43
-
-
59149105813
-
Reduced use of antimicrobials after vaccination of pigs against porcine proliferative enteropathy in a Danish SPF herd
-
Bak H, Rathkjen PH. 2009 Reduced use of antimicrobials after vaccination of pigs against porcine proliferative enteropathy in a Danish SPF herd. Acta Vet. Scand. 51, 1. (doi:10.1186/1751-0147-51-1)
-
(2009)
Acta Vet. Scand
, vol.51
, Issue.1
-
-
Bak, H.1
Rathkjen, P.H.2
-
44
-
-
78651452290
-
Suppression of avian influenza transmission in genetically modified chickens
-
Lyall J et al. 2011 Suppression of avian influenza transmission in genetically modified chickens. Science 331, 223–226. (doi:10.1126/science.1198020)
-
(2011)
Science
, vol.331
, pp. 223-226
-
-
Lyall, J.1
-
45
-
-
84903766667
-
Policy: An intergovernmental panel on antimicrobial resistance
-
Woolhouse M, Farrar J. 2014 Policy: an intergovernmental panel on antimicrobial resistance. Nature 509, 555–557. (doi:10.1038/509555a)
-
(2014)
Nature
, vol.509
, pp. 555-557
-
-
Woolhouse, M.1
Farrar, J.2
|