Arcellinida testate amoebae (Amoebozoa: Arcellinida): Model of organisms for assessing microbial biogeography

Biogeography of Microscopic Organisms is Everything Small Everywhere?

Volumn , Issue , 2011, Pages 111-129

  Heger, Thierry J ^a,b,c   Lara, Enrique ^d   Mitchell, Edward A D ^d  

^a SWISS FEDERAL RESEARCH INSTITUTE WSL   (Switzerland)

^b UNIVERSITY OF GENEVA   (Switzerland)

^c UNIVERSITY OF BRITISH COLUMBIA   (Canada)

^d UNIVERSITY OF NEUCHÂTEL   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84928597052     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1017/CBO9780511974878.008     Document Type: Chapter

References (72)

1. Baas Becking, L.G.M. (1934). Geobiologie of inleiding tot de milieukunde. The Hague: Van Stockum and Zoon.
2. Beijerinck, M.W. (1913). De infusies en de ontdekking der backteriën. Amsterdam: Müller.
3. Bisson, I.A., Marra, P.P., Burtt, E.H., Sikaroodi, M., Gillevet, P.M. (2009). Variation in plumage microbiota depends on season and migration. Microbial Ecology 58, 212-220.
4. Bonnet, L. (1959). Quelques aspects des populations Thécamoebiennes endogées. Bulletin de la Société d’Histoire Naturelle de Toulouse 94, 413-428.
5. Bonnet, L. (1977a). Faunistique et biogéographie des Thécamoebiens. I. Thécamoebiens des sols du Mexique. Bulletin de la Société d’Histoire Naturelle de Toulouse 113, 40-44.
6. Bonnet, L. (1977b). Le peuplement thécamoebien des sols du Népal et son intérêt biogéographique. Bulletin de la Société d’Histoire Naturelle de Toulouse 113, 331-348.
7. Charman, D.J. (1997). Modelling hydrological relationships of testate amoebae (Protozoa: Rhizopoda) on New Zealand peatlands. Journal of the Royal Society of New Zealand 27, 465-483.
8. Charman, D.J., Warner, B.G. (1992). Relationship between testate amebas (Protozoa, Rhizopoda) and microenvironmental parameters on a forested peatland in Northeastern Ontario. Canadian Journal of Zoology -Revue Canadienne de Zoologie 70, 2474-2482.
9. Charman, D.J., Brown, A.D., Hendon, D., Karofeld, E. (2004). Testing the relationship between Holocene peatland palaeoclimate reconstructions and instrumental data at two European sites. Quaternary Science Reviews 23, 137-143.
10. Clarholm, M. (1985). Interactions of bacteria, protozoa and plants leading to mineralization of soil-nitrogen. Soil Biology and Biochemistry 17, 181-187.
11. Clark, K.L., Lawton, R.O., Butler, P.R. (2000). The physical environment. In Nadkarni NM, Wheelwright NT (eds.), Monteverde, Ecology and Conservation of a Tropical Cloud Forest, pp 16-38. New York: Cambridge University Press.
12. Corliss, J.O. (2002). Biodiversity and biocomplexity of the protists and an overview of their signifiant roles in maintenance of our biosphere. Acta Protozoologica 41, 199-219.
13. Corliss, J.O., Esser, S.C. (1974). Role of cyst in life-cycle and survival of free-living protozoa. Transactions of the American Microscopical Society 93, 578-593.
14. Darwin, C. (1846). An account of the fine dust which often falls on vessels in the Atlantic Ocean. Quarterly Journal of the Geological Society 2, 26-30.
15. Deflandre, G. (1928). Le genre Arcella Ehrenberg. Morphologie-Biologie. Essai phylogénétique et systématiqe. Archiv für Protistenkunde 64, 152-287.
16. Deflandre, G. (1936). Etude monographique sur le genre Nebela Leidy. Annales de Protistologie 5, 201-286.
17. de Vargas, C., Norris, R., Zaninetti, L., Gibb, S.W., Pawlowski, J. (1999). Molecular evidence of cryptic speciation in planktonic foraminifers and their relation to oceanic provinces. Proceedings of the National Academy of Sciences USA 96, 2864-2868.
18. De Wit, R., Bouvier, T. (2006). ‘Everything is everywhere, but the environment selects’; what did Baas Becking and Beijerinck really say? Environmental Microbiology 8, 755-758.
19. Ehrenberg, C.G. (1838). Ein Blick in das tiefere organische Leben der Natur. In Voss VvL (ed.), Die Infusionstheirchen als vollkommene Organismen. Leipzig.
20. Ehrenberg, C.G. (1850). On infusorial deposits on the River Chutes in Oregon. American Journal of Science 9, 140.
21. Falkowski, P.G., Katz, M.E., Knoll, A.H. et al. (2004). The evolution of modern eukaryotic phytoplankton. Science 305, 354-360.
22. Finlay, B.J. (2002). Global dispersal of freeliving microbial eukaryote species. Science 296, 1061-1063.
23. Finlay, B.J., Esteban, G.F., Fenchel, T. (2004). Protist diversity is different? Protist 155, 15-22.
24. Foissner, W. (1987). Soil protozoa: fundamental problems, ecological significance, adaptation in ciliates and testaceans, bioindicators, and guide to the literature. Progress in Protozoology 2, 69-212.
25. Foissner, W. (2006). Biogeography and dispersal of micro-organisms: a review emphasizing protists. Acta Protozoologica 45, 111-136.
26. Gilbert, D., Amblard, C., Bourdier, G., Francez, A.-J., Mitchell, E.A.D. (2000). Le régime alimentaire des thécamoebiens. L’Année Biologique 39, 57-68.
27. Golemansky, V. (1967). Tecamebianos Muscicolas (Rhizopoda, Testacea) de Mexico. Revista de la Sociedad Mexicana de Historia Natural 18, 73-77.
28. Golemansky, V. (2007). Testate amoebas and monothalamous foraminifera (Protozoa) from the Bulgarian Black Sea Coast. In Fet V., Popov, A. (eds.), Biogeography and Ecology of Bulgaria, pp 555-570. Dordrecht: Springer.
29. Gorbushina, A.A., Kort, R., Schulte, A. et al. (2007). Life in Darwin’s dust: intercontinental transport and survival of microbes in the nineteenth century. Environmental Microbiology 9, 2911-2922.
30. Griffin, D.W., Kellogg, C.A., Garrison, V.H., Shinn, E.A. (2002). The global transport of dust - an intercontinental river of dust, microorganisms and toxic chemicals flows through the Earth’s atmosphere. American Scientist 90, 228-235.
31. Heger, T.J., Mitchell, E.A.D., Ledeganck, P. et al. (2009). The curse of taxonomic uncertainty in biogeographical studies of free-living terrestrial protists: a case study of testate amoebae from Amsterdam Island. Journal of Biogeography 36, 1551-1560.
32. Heger, T.J., Mitchell, E.A.D., Golemansky, V. et al. (2010). Molecular phylogeny of euglyphid testate amoebae (Cercozoa: Euglyphida) suggests transitions between marine supralittoral and freshwater/terrestrial environments are infrequent. Molecular Phylogenetics and Evolution 55, 113-122.
33. Heinis, F. (1911). Beiträge zur Kenntnis der Centralamerikanischen Moosfauna. Revue Suisse de Zoologie 19, 253-256.
34. Heinis, F. (1914). Die Moosfauna Columbiens: In Voyage d’exploration scientifique en Colombie. Mémoires de la Société Neuchâteloise des Sciences Naturelles 5, 675-730.
35. Hervas, A., Camarero, L., Reche, I., Casamayor, E.O. (2009). Viability and potential for immigration of airborne bacteria from Africa that reach high mountain lakes in Europe. Environmental Microbiology 11, 1612-1623.
36. Kellogg, C.A., Griffin, D.W. (2006). Aerobiology and the global transport of desert dust. Trends in Ecology and Evolution 21, 638-644.
37. Kilroy, C., Sabbe, K., Bergey, E.A., Vyverman, W., Lowe, R. (2003). New species of Fragilariforma (Bacillariophyceae) from New Zealand and Australia. New Zealand Journal of Botany 41, 535-554.
38. Klueken, A.M., Hau, B., Ulber, B., Poehling, H.M. (2009). Forecasting migration of cereal aphids (Hemiptera: Aphididae) in autumn and spring. Journal of Applied Entomology 133, 328-344.
39. Kokfelt, U., Rosen, P., Schoning, K. et al. (2009). Ecosystem responses to increased precipitation and permafrost decay in subarctic Sweden inferred from peat and lake sediments. Global Change Biology 15, 1652-1663.
40. Kufferath, H. (1929). Algues et protistes muscicoles, corticoles et terrestres récoltés sur la montagne de Barba (Costa Rica). Annales de Cryptogamie Exotique 2, 23-52.
41. Laggoun-Defarge, F., Mitchell, E., Gilbert, D. et al. (2008). Cut-over peatland regeneration assessment using organic matter and microbial indicators (bacteria and testate amoebae). Journal of Applied Ecology 45, 716-727.
42. Lamentowicz, M., Obremska, M., Mitchell, E.A.D. (2008). Autogenic succession, land-use change, and climatic influences on the Holocene development of a kettle-hole mire in Northern Poland. Review of Palaeobotany and Palynology 151, 21-40.
43. Laminger, H. (1973). Die Testaceen (Protozoa, Rhizopoda) einiger Hochgebirgsgewässer von Mexiko, Costa Rica und Guatemala. Internationale Revue der gesamten Hydrobiologie und Hydrographie 58, 273-305.
44. Lara, E., Heger, T.J., Ekelund, F., Lamentowicz, M., Mitchell, E.A.D. (2008). Ribosomal RNA genes challenge the monophyly of the Hyalospheniidae (Amoebozoa: Arcellinida). Protist 159, 165-176.
45. Madrazo-Garibay, M., López-Ochoterena, E. (1982). Segunda lista taxonómica comentada de protozoarios de vida libre de México. Revista latinoamericana de microbiología 24, 281-295.
46. Martinez, M., Fernandez, E., Valdes, J. et al. (2000). Chemical evolution and volcanic activity of the active crater lake of Poas volcano, Costa Rica, 1993-1997. Journal of Volcanology and Geothermal Research 97, 127-141.
47. Meisterfeld, R. (2002). Order Arcellinida Kent, 1880. In Lee JJ, Leedale GF, Bradbury P (eds.), The Illustrated Guide To The Protozoa, pp 827-860. Lawrence, KS: Society of Protozoologists.
48. Mitchell, E.A.D., Meisterfeld, R. (2005). Taxonomic confusion blurs the debate on cosmopolitanism versus local endemism of free-living protists. Protist 156, 263-267.
49. Mitchell, E.A.D., Charman, D.J., Warner, B.G. (2008). Testate amoebae analysis in ecological and paleoecological studies of wetlands: past, present and future. Biodiversity and Conservation 17, 2115-2137.
50. Nguyen-Viet, H., Gilbert, D., Mitchell, E.A.D., Badot, P.M., Bernard, N. (2007). Effects of experimental lead pollution on the microbial communities associated with Sphagnum fallax (Bryophyta). Microbial Ecology 54, 232-241.
51. Nguyen-Viet, H., Bernard, N., Mitchell, E.A.D., Badot, P.M., Gilbert, D. (2008). Effect of lead pollution on testate amoebae communities living in Sphagnum fallax: an experimental study. Ecotoxicology and Environmental Safety 69, 30-138.
52. Nikolaev, S.I., Mitchell, E.A.D., Petrov, N.B. et al. (2005). The testate lobose amoebae (order Arcellinida Kent, 1880) finally find their home within Amoebozoa. Protist 156, 191-202.
53. O’Malley, M.A. (2007). The nineteenth century roots of ’everything is everywhere’. Nature Reviews Microbiology 5, 647-651.
54. Pearce, D.A., Bridge, P.D., Hughes, K.A. et al. (2009). Microorganisms in the atmosphere over Antarctica. FEMS Microbiology Ecology 69, 143-157.
55. Penard, E. (1902). Faune rhizopodique du bassin du Léman. Genève: Kündig.
56. Penard, E. (1938). Les infiniment petits dans leurs manifestations vitales, pp 1-212. Genève: Georg & Cie.
57. Rowe, G.L., Brantley, S.L., Fernandez, M. et al. (1992). Fluid-volcano interaction in an active stratovolcano - the crater lake system of Poás volcano, Costa Rica. Journal of Volcanology and Geothermal Research 49, 23-51.
58. Schröter, D., Wolters, V., De Ruiter, P.C. (2003). C and N mineralisation in the decomposer food webs of a European forest transect. Oikos 102, 294-308.
59. Slapeta, J., Moreira, D., López-García, P. (2005). The extent of protest diversity: insights from molecular ecology of freshwater eukaryotes. Proceedings of the Royal Society B - Biological Sciences 272, 2073-2081.
60. Smith, H.G., Bobrov, A., Lara, E. (2008). Diversity and biogeography of testate amoebae. Biodiversity and Conservation 17, 329-343.
61. Smith, H.G., Wilkinson, D.M. (2007). Not all free-living microorganisms have cosmopolitan distributions - the case of Nebela (Apodera) vas Certes (Protozoa: Amoebozoa: Arcellinida). Journal of Biogeography 34, 1822-1831.
62. Todorov, M., Golemansky, V. (2007). Seasonal dynamics of the diversity and abundance of the marine interstitial testate amoebae (Rhizopoda: Testacealobosia and Testaceafilosia) in the Black Sea supralittoral. Acta Protozoologica 46, 169-181.
63. Van de Vijver, B., Gremmen, N.J.M., Beyens, L. (2005). The genus Stauroneis (Bacillariophyceae) in the Antarctic region. Journal of Biogeography 32, 1791-1798.
64. Vanormelingen, P., Verleyen, E., Vyverman, W. (2008). The diversity and distribution of diatoms: from cosmopolitanism to narrow endemism. Biodiversity and Conservation 17, 393-405.
65. Wanner, M., Xylander, W.E.R. (2005). Biodiversity development of terrestrial testate amoebae: is there any succession at all? Biology and Fertility of Soils 41, 428-438.
66. Webb, S.D. (1991) Ecogeography and the Great American Interchange. Paleobiology 17, 266-280.
67. Wilkinson, D.M. (2010). Have we underestimated the importance of humans in the biogeography of freeliving terrestrial microorganisms? Journal of Biogeography 37, 393-397.
68. Wilkinson, D.M., Koumoutsaris, S., Mitchell, E.A.D., Bey, I. (In prep) Investigating the aerial distribution of microorganisms with a model of the global atmospheric circulation.
69. Wuthrich, M., Matthey, W. (1980). Les diatomées de la Tourbière du Cachot (Jura Neuchâtelois) III. Etude de l’apport éolien et du transport par les oiseaux et insectes aquatiques. Swiss Journal of Hydrology 42, 269-284.
70. Yeates, G.W., Foissner, W. (1995). Testate amebas as predators of nematodes. Biology and Fertility of Soils 20, 1-7.
71. Zapata, J., Fernández, L. (2008). Morphology and morphometry of Apodera vas (Certes, 1889) (Protozoa: Testacea) from two peatlands in Southern Chile. Acta Protozoologica 47, 389-395.
72. Zapata, J., Yáñez, M., Rudolph, E. (2008). Thecamoebians (Protozoa: Rhizopoda) of the peatland from Puyehue National Park (40° 45’S; 72° 19’W), Chile. Gayana 72, 9-17.