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Volumn 65, Issue 3, 2015, Pages 237-246

Genomics are transforming our understanding of responses to climate change

Author keywords

Adaptation; Ecology; Genomics; Migration; Population

Indexed keywords


EID: 84928360519     PISSN: 00063568     EISSN: 15253244     Source Type: Journal    
DOI: 10.1093/biosci/biu219     Document Type: Review
Times cited : (35)

References (71)
  • 7
    • 84897646129 scopus 로고    scopus 로고
    • Phylogeography unplugged: Comparative surveys in the genomic era
    • Bowen BW, et al. 2014. Phylogeography unplugged: comparative surveys in the genomic era. Bulletin of Marine Science 90: 13-46.
    • (2014) Bulletin of Marine Science , vol.90 , pp. 13-46
    • Bowen, B.W.1
  • 8
    • 84877029873 scopus 로고    scopus 로고
    • Epigenetic regulation of adaptive responses of forest tree species to the environment
    • Brautigam K, et al. 2013. Epigenetic regulation of adaptive responses of forest tree species to the environment. Ecology and Evolution 3: 399-415.
    • (2013) Ecology and Evolution , vol.3 , pp. 399-415
    • Brautigam, K.1
  • 9
    • 65449133181 scopus 로고    scopus 로고
    • Multilocus phylogeography and phylogenetics using sequence-based markers
    • Brito PH, Edwards SV. 2009. Multilocus phylogeography and phylogenetics using sequence-based markers. Genetica 135: 429-455.
    • (2009) Genetica , vol.135 , pp. 429-455
    • Brito, P.H.1    Edwards, S.V.2
  • 10
    • 84964582112 scopus 로고    scopus 로고
    • Comparative phylogeography of the coral triangle and implications for marine management
    • Article ID 396982
    • Carpenter KE, et al. 2011. Comparative phylogeography of the coral triangle and implications for marine management. Journal of Marine Biology 2011: Article ID 396982.
    • (2011) Journal of Marine Biology , vol.2011
    • Carpenter, K.E.1
  • 11
    • 80051873100 scopus 로고    scopus 로고
    • Rapid range shifts of species associated with high levels of climate warming
    • Chen I-C, Hill JK, Ohlem?ller R, Roy DB, Thomas CD. 2011. Rapid range shifts of species associated with high levels of climate warming. Science 333: 1024-1026.
    • (2011) Science , vol.333 , pp. 1024-1026
    • Chen, I.-C.1    Hill, J.K.2    Ohlemller, R.3    Roy, D.B.4    Thomas, C.D.5
  • 12
    • 73149123343 scopus 로고    scopus 로고
    • Genetic diagnosis by whole exome capture and massively parallel DNA sequencing
    • Choi M, et al. 2009. Genetic diagnosis by whole exome capture and massively parallel DNA sequencing. Proceedings of the National Academy of Sciences 106: 19096-19101.
    • (2009) Proceedings of the National Academy of Sciences , vol.106 , pp. 19096-19101
    • Choi, M.1
  • 13
    • 79551632781 scopus 로고    scopus 로고
    • The ecoresponsive genome of Daphnia pulex
    • Colbourne JK, et al. 2011. The ecoresponsive genome of Daphnia pulex. Science 331: 555-561.
    • (2011) Science , vol.331 , pp. 555-561
    • Colbourne, J.K.1
  • 14
    • 84897662441 scopus 로고    scopus 로고
    • Concordance between phylogeographic and biogeographic boundaries in the Coral Triangle: Conservation implications based on comparative analyses of multiple giant clam species
    • DeBoer TS, Naguit MRA, Erdmann MV, Ablan-Lagman MCA, Ambariyanto, Carpenter KE, Toha AHA, Barber PH. 2014. Concordance between phylogeographic and biogeographic boundaries in the Coral Triangle: Conservation implications based on comparative analyses of multiple giant clam species. Bulletin of Marine Science 90: 277-300.
    • (2014) Bulletin of Marine Science , vol.90 , pp. 277-300
    • Deboer, T.S.1    Naguit, M.R.A.2    Erdmann, M.V.3    Ablan-Lagman, M.C.A.4    Ambariyanto5    Carpenter, K.E.6    Toha, A.H.A.7    Barber, P.H.8
  • 15
    • 84890722952 scopus 로고    scopus 로고
    • Adaptation and exogenous selection in a Picea glauca x Picea engelmannii hybrid zone: Implications for forest management under climate change
    • De La Torre AR, Wang TL, Jaquish B, Aitken SN. 2014. Adaptation and exogenous selection in a Picea glauca x Picea engelmannii hybrid zone: Implications for forest management under climate change. New Phytologist 201: 687-699.
    • (2014) New Phytologist , vol.201 , pp. 687-699
    • De La Torre, A.R.1    Wang, T.L.2    Jaquish, B.3    Aitken, S.N.4
  • 16
    • 84865344067 scopus 로고    scopus 로고
    • Structure, fluctuation and magnitude of a natural grassland soil metagenome
    • Delmont TO, et al. 2012. Structure, fluctuation and magnitude of a natural grassland soil metagenome. Isme Journal 6: 1677-1687.
    • (2012) Isme Journal , vol.6 , pp. 1677-1687
    • Delmont, T.O.1
  • 17
    • 84888585514 scopus 로고    scopus 로고
    • Genotype-byenvironment interaction and plasticity: Exploring genomic responses of plants to the abiotic environment
    • Des Marais DL, Hernandez KM, Juenger TE. 2013. Genotype-byenvironment interaction and plasticity: Exploring genomic responses of plants to the abiotic environment. Annual Review of Ecology Evolution and Systematics 44: 5-29.
    • (2013) Annual Review of Ecology Evolution and Systematics , vol.44 , pp. 5-29
    • Des Marais, D.L.1    Hernandez, K.M.2    Juenger, T.E.3
  • 20
    • 84859855727 scopus 로고    scopus 로고
    • A species assemblage approach to comparative phylogeography of birds in southern Australia
    • Dolman G, Joseph L. 2012. A species assemblage approach to comparative phylogeography of birds in southern Australia. Ecology and Evolution 2: 354-369.
    • (2012) Ecology and Evolution , vol.2 , pp. 354-369
    • Dolman, G.1    Joseph, L.2
  • 21
    • 84887626254 scopus 로고    scopus 로고
    • The phenomenon of microbial uncultivability
    • Epstein SS. 2013. The phenomenon of microbial uncultivability. Current Opinion in Microbiology 16: 636-642.
    • (2013) Current Opinion in Microbiology , vol.16 , pp. 636-642
    • Epstein, S.S.1
  • 22
    • 84875222874 scopus 로고    scopus 로고
    • Transcriptomic responses to ocean acidification in larval sea urchins from a naturally variable pH environment
    • Evans TG, Chan F, Menge BA, Hofmann GE. 2013. Transcriptomic responses to ocean acidification in larval sea urchins from a naturally variable pH environment. Molecular Ecology 22: 1609-1625.
    • (2013) Molecular Ecology , vol.22 , pp. 1609-1625
    • Evans, T.G.1    Chan, F.2    Menge, B.A.3    Hofmann, G.E.4
  • 23
    • 84860681436 scopus 로고    scopus 로고
    • Defining the limits of physiological plasticity: How gene expression can assess and predict the consequences of ocean change
    • Evans TG, Hofmann GE. 2012. Defining the limits of physiological plasticity: How gene expression can assess and predict the consequences of ocean change. Philosophical Transactions of the Royal Society B 367: 1733-1745.
    • (2012) Philosophical Transactions of the Royal Society B , vol.367 , pp. 1733-1745
    • Evans, T.G.1    Hofmann, G.E.2
  • 25
    • 84890242685 scopus 로고    scopus 로고
    • Sequencing-based gene network analysis provides a core set of gene resource for understanding thermal adaptation in Zhikong scallop Chlamys farreri
    • Fu X, et al. 2014. Sequencing-based gene network analysis provides a core set of gene resource for understanding thermal adaptation in Zhikong scallop Chlamys farreri. Molecular Ecology Resources 14: 184-198.
    • (2014) Molecular Ecology Resources , vol.14 , pp. 184-198
    • Fu, X.1
  • 26
    • 70350771134 scopus 로고    scopus 로고
    • Mitochondrial DNA as a marker of molecular diversity: A reappraisal
    • Galtier N, Nabholz B, Glemin S, Hurst GDD. 2009. Mitochondrial DNA as a marker of molecular diversity: A reappraisal. Molecular Ecology 18: 4541-4550.
    • (2009) Molecular Ecology , vol.18 , pp. 4541-4550
    • Galtier, N.1    Nabholz, B.2    Glemin, S.3    Hurst, G.D.D.4
  • 27
    • 28744458859 scopus 로고    scopus 로고
    • Bioconductor: Open software development for computational biology and bioinformatics
    • (art. R80)
    • Gentleman RC, et al. 2004. Bioconductor: Open software development for computational biology and bioinformatics. Genome Biology 5 (art. R80).
    • (2004) Genome Biology , vol.5
    • Gentleman, R.C.1
  • 28
    • 84875845460 scopus 로고    scopus 로고
    • High natural gene expression variation in the reef-building coral Acropora millepora: Potential for acclimative and adaptive plasticity
    • (art. 228)
    • Granados-Cifuentes C, Bellantuono AJ, Ridgway T, Hoegh-Guldberg O, Rodriguez-Lanetty M. 2013. High natural gene expression variation in the reef-building coral Acropora millepora: Potential for acclimative and adaptive plasticity. BMC Genomics 14 (art. 228).
    • (2013) BMC Genomics , vol.14
    • Granados-Cifuentes, C.1    Bellantuono, A.J.2    Ridgway, T.3    Hoegh-Guldberg, O.4    Rodriguez-Lanetty, M.5
  • 30
    • 84872440823 scopus 로고    scopus 로고
    • Genomic and phenotypic architecture of a spruce hybrid zone (Picea sitchensis P
    • Hamilton JA, Lexer C, Aitken SN. 2013. Genomic and phenotypic architecture of a spruce hybrid zone (Picea sitchensis P. glauca). Molecular Ecology 22: 827-841.
    • (2013) Glauca). Molecular Ecology , vol.22 , pp. 827-841
    • Hamilton, J.A.1    Lexer, C.2    Aitken, S.N.3
  • 31
    • 79951759855 scopus 로고    scopus 로고
    • Application of SNPs for population genetics of nonmodel organisms: New opportunities and challenges
    • Helyar SJ, et al. 2011. Application of SNPs for population genetics of nonmodel organisms: New opportunities and challenges. Molecular Ecology Resources 11: 123-136.
    • (2011) Molecular Ecology Resources , vol.11 , pp. 123-136
    • Helyar, S.J.1
  • 32
    • 0034702196 scopus 로고    scopus 로고
    • The genetic legacy of the Quaternary ice ages
    • Hewitt G. 2000. The genetic legacy of the Quaternary ice ages. Nature 405: 907-913.
    • (2000) Nature , vol.405 , pp. 907-913
    • Hewitt, G.1
  • 34
  • 37
    • 34250159524 scopus 로고    scopus 로고
    • Genome-wide mapping of in vivo protein-DNA interactions
    • Johnson DS, Mortazavi A, Myers RM, Wold B. 2007. Genome-wide mapping of in vivo protein-DNA interactions. Science 316: 1497-1502.
    • (2007) Science , vol.316 , pp. 1497-1502
    • Johnson, D.S.1    Mortazavi, A.2    Myers, R.M.3    Wold, B.4
  • 38
    • 50049083798 scopus 로고    scopus 로고
    • Strong genetic population structure in the boring giant clam, Tridacna crocea, across the Indo-Malay Archipelago: Implications related to evolutionary processes and connectivity
    • Kochzius M, Nuryanto A. 2008. Strong genetic population structure in the boring giant clam, Tridacna crocea, across the Indo-Malay Archipelago: implications related to evolutionary processes and connectivity. Molecular Ecology 17: 3775-3787.
    • (2008) Molecular Ecology , vol.17 , pp. 3775-3787
    • Kochzius, M.1    Nuryanto, A.2
  • 39
    • 84880213175 scopus 로고    scopus 로고
    • New frontiers for organismal biology
    • Kultz D, et al. 2013. New frontiers for organismal biology. Bioscience 63: 464-471.
    • (2013) Bioscience , vol.63 , pp. 464-471
    • Kultz, D.1
  • 41
    • 84897976963 scopus 로고    scopus 로고
    • Local adaptation at the transcriptome level in brown trout: Evidence from early life history temperature genomic reaction norms
    • (art. e85171)
    • Meier K, Hansen MM, Normandeau E, Mensberg K-LD, Frydenberg J, Larsen PF, Bekkevold D, Bernatchez L. 2014. Local adaptation at the transcriptome level in brown trout: Evidence from early life history temperature genomic reaction norms. PLOS ONE 9 (art. e85171).
    • (2014) PLOS ONE , vol.9
    • Meier, K.1    Hansen, M.M.2    Normandeau, E.3    K-Ld, M.4    Frydenberg, J.5    Larsen, P.F.6    Bekkevold, D.7    Bernatchez, L.8
  • 42
    • 33846874137 scopus 로고    scopus 로고
    • Rapid and cost-effective polymorphism identification and genotyping using restriction site associated DNA (RAD) markers
    • Miller MR, Dunham JP, Amores A, Cresko WA, Johnson EA. 2007. Rapid and cost-effective polymorphism identification and genotyping using restriction site associated DNA (RAD) markers. Genome Research 17: 240-248.
    • (2007) Genome Research , vol.17 , pp. 240-248
    • Miller, M.R.1    Dunham, J.P.2    Amores, A.3    Cresko, W.A.4    Johnson, E.A.5
  • 43
    • 35848929259 scopus 로고    scopus 로고
    • Highly accurate SNP genotyping from historical and low-quality samples
    • Morin PA, McCarthy M. 2007. Highly accurate SNP genotyping from historical and low-quality samples. Molecular Ecology Notes 7: 937-946.
    • (2007) Molecular Ecology Notes , vol.7 , pp. 937-946
    • Morin, P.A.1    McCarthy, M.2
  • 44
    • 84860528360 scopus 로고    scopus 로고
    • Whole transcriptome analysis of the coral Acropora millepora reveals complex responses to CO2-driven acidification during the initiation of calcification
    • Moya A, Huisman L, Ball EE, Hayward DC, Grasso LC, Chua CM, Woo HN, Gattuso JP, Foret S, Miller DJ. 2012. Whole transcriptome analysis of the coral Acropora millepora reveals complex responses to CO2-driven acidification during the initiation of calcification. Molecular Ecology 21: 2440-2454.
    • (2012) Molecular Ecology , vol.21 , pp. 2440-2454
    • Moya, A.1    Huisman, L.2    Ball, E.E.3    Hayward, D.C.4    Grasso, L.C.5    Chua, C.M.6    Woo, H.N.7    Gattuso, J.P.8    Foret, S.9    Miller, D.J.10
  • 45
    • 84878215960 scopus 로고    scopus 로고
    • Temperature and CO2 additively regulate physiology, morphology and genomic responses of larval sea urchins, Strongylocentrotus purpuratus
    • (art. 20130155)
    • Padilla-Gamino JL, Kelly MW, Evans TG, Hofmann GE. 2013. Temperature and CO2 additively regulate physiology, morphology and genomic responses of larval sea urchins, Strongylocentrotus purpuratus. Proceedings of the Royal Society B 280 (art. 20130155).
    • (2013) Proceedings of the Royal Society B , vol.280
    • Padilla-Gamino, J.L.1    Kelly, M.W.2    Evans, T.G.3    Hofmann, G.E.4
  • 46
    • 84879787816 scopus 로고    scopus 로고
    • Differences in the regulation of growth and biomineralization genes revealed through long-term common-garden acclimation and experimental genomics in the purple sea urchin
    • Pespeni MH, Barney BT, Palumbi SR. 2013a. Differences in the regulation of growth and biomineralization genes revealed through long-term common-garden acclimation and experimental genomics in the purple sea urchin. Evolution 67: 1901-1914.
    • (2013) Evolution , vol.67 , pp. 1901-1914
    • Pespeni, M.H.1    Barney, B.T.2    Palumbi, S.R.3
  • 47
    • 84876835091 scopus 로고    scopus 로고
    • Evolutionary change during experimental ocean acidification
    • Pespeni MH, et al. 2013b. Evolutionary change during experimental ocean acidification. Proceedings of the National Academy of Sciences 110: 6937-6942.
    • (2013) Proceedings of the National Academy of Sciences , vol.110 , pp. 6937-6942
    • Pespeni, M.H.1
  • 50
    • 84880511242 scopus 로고    scopus 로고
    • Pan genome of the phytoplankton Emiliania underpins its global distribution
    • Read BA, et al. 2013. Pan genome of the phytoplankton Emiliania underpins its global distribution. Nature 499: 209-213.
    • (2013) Nature , vol.499 , pp. 209-213
    • Read, B.A.1
  • 51
    • 36148984549 scopus 로고    scopus 로고
    • Phylogeography and the conservation of coral reef fishes
    • Rocha LA, Craig MT, Bowen BW. 2007. Phylogeography and the conservation of coral reef fishes. Coral Reefs 26: 513-513.
    • (2007) Coral Reefs , vol.26 , pp. 513-513
    • Rocha, L.A.1    Craig, M.T.2    Bowen, B.W.3
  • 52
    • 0016800090 scopus 로고
    • Rapid method for determining sequences in DNA by primed synthesis with DNA-polymerase
    • Sanger F, Coulson AR. 1975. Rapid method for determining sequences in DNA by primed synthesis with DNA-polymerase. Journal of Molecular Biology 94: 441-448.
    • (1975) Journal of Molecular Biology , vol.94 , pp. 441-448
    • Sanger, F.1    Coulson, A.R.2
  • 55
    • 84866418846 scopus 로고    scopus 로고
    • Multi-partner interactions in corals in the face of climate change
    • Sharp KH, Ritchie KB. 2012. Multi-partner interactions in corals in the face of climate change. Biological Bulletin 223: 66-77.
    • (2012) Biological Bulletin , vol.223 , pp. 66-77
    • Sharp, K.H.1    Ritchie, K.B.2
  • 57
    • 84896396799 scopus 로고    scopus 로고
    • Enhanced dissolved organic carbon production in aquatic ecosystems in response to elevated atmospheric CO2
    • Song C, Ballantyne F, Smith VH. 2014. Enhanced dissolved organic carbon production in aquatic ecosystems in response to elevated atmospheric CO2. Biogeochemistry 118: 49-60.
    • (2014) Biogeochemistry , vol.118 , pp. 49-60
    • Song, C.1    Ballantyne, F.2    Smith, V.H.3
  • 58
    • 0018426987 scopus 로고
    • Strategy of DNA sequencing employing computer-programs
    • Staden R. 1979. Strategy of DNA sequencing employing computer-programs. Nucleic Acids Research 6: 2601-2610.
    • (1979) Nucleic Acids Research , vol.6 , pp. 2601-2610
    • Staden, R.1
  • 59
    • 0038725000 scopus 로고    scopus 로고
    • Acclimation capacity underlies susceptibility to climate change
    • Stillman JH. 2003. Acclimation capacity underlies susceptibility to climate change. Science 301: 65-65.
    • (2003) Science , vol.301 , pp. 65-65
    • Stillman, J.H.1
  • 60
    • 70349883811 scopus 로고    scopus 로고
    • Seasonal and latitudinal acclimatization of cardiac transcriptome responses to thermal stress in porcelain crabs, Petrolisthes cinctipes
    • Stillman JH, Tagmount A. 2009. Seasonal and latitudinal acclimatization of cardiac transcriptome responses to thermal stress in porcelain crabs, Petrolisthes cinctipes. Molecular Ecology 18: 4206-4226.
    • (2009) Molecular Ecology , vol.18 , pp. 4206-4226
    • Stillman, J.H.1    Tagmount, A.2
  • 61
    • 38549103015 scopus 로고    scopus 로고
    • Combining population genomics and quantiative genetics: Finding the genes underlying ecologically important traits
    • Stinchcombe J, Hoekstra H. 2008. Combining population genomics and quantiative genetics: Finding the genes underlying ecologically important traits. Heredity 100: 158-170.
    • (2008) Heredity , vol.100 , pp. 158-170
    • Stinchcombe, J.1    Hoekstra, H.2
  • 64
    • 84879932140 scopus 로고    scopus 로고
    • Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean
    • Swan BK, et al. 2013. Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean. Proceedings of the National Academy of Sciences 110: 11463-11468.
    • (2013) Proceedings of the National Academy of Sciences , vol.110 , pp. 11463-11468
    • Swan, B.K.1
  • 66
    • 51649118551 scopus 로고    scopus 로고
    • Geological history and oceanography of the Indo-Malay Archipelago shape the genetic populations structure in the false clownfish (Amphiprion ocellaris)
    • Timm J, Kochzius M. 2008. Geological history and oceanography of the Indo-Malay Archipelago shape the genetic populations structure in the false clownfish (Amphiprion ocellaris). Molecular Ecology 17: 3999-4014.
    • (2008) Molecular Ecology , vol.17 , pp. 3999-4014
    • Timm, J.1    Kochzius, M.2
  • 67
    • 68249114202 scopus 로고    scopus 로고
    • Transcriptomic response of sea urchin larvae Strongylocentrotus purpuratus to CO2-driven seawater acidification
    • Todgham AE, Hofmann GE. 2009. Transcriptomic response of sea urchin larvae Strongylocentrotus purpuratus to CO2-driven seawater acidification. Journal of Experimental Biology 212: 2579-2594.
    • (2009) Journal of Experimental Biology , vol.212 , pp. 2579-2594
    • Todgham, A.E.1    Hofmann, G.E.2
  • 68
    • 84875438796 scopus 로고    scopus 로고
    • Genes related to ion-transport and energy production are upregulated in response to CO2-driven pH decrease in corals: New insights from transcriptome analysis
    • (art. e58652)
    • Vidal-Dupiol J, Zoccola D, Tambutte E, Grunau C, Cosseau C, Smith KM, Freitag M, Dheilly NM, Allemand D, Tambutte S. 2013. Genes related to ion-transport and energy production are upregulated in response to CO2-driven pH decrease in corals: New insights from transcriptome analysis. PLOS ONE 8 (art. e58652).
    • (2013) PLOS ONE , vol.8
    • Vidal-Dupiol, J.1    Zoccola, D.2    Tambutte, E.3    Grunau, C.4    Cosseau, C.5    Smith, K.M.6    Freitag, M.7    Dheilly, N.M.8    Allemand, D.9    Tambutte, S.10
  • 69
    • 84858681859 scopus 로고    scopus 로고
    • Comparative genomics in ecological physiology: Toward a more nuanced understanding of acclimation and adaptation
    • Whitehead A. 2012. Comparative genomics in ecological physiology: Toward a more nuanced understanding of acclimation and adaptation. Journal of Experimental Biology 215: 884-891.
    • (2012) Journal of Experimental Biology , vol.215 , pp. 884-891
    • Whitehead, A.1
  • 70
    • 84897027909 scopus 로고    scopus 로고
    • Temperature-dependent differential transcriptomes during formation of an epigenetic memory in Norway spruce embryogenesis
    • Yakovlev IA, Lee Y, Rotter B, Olsen JE, Skroppa T, Johnsen O, Fossdal CG. 2014. Temperature-dependent differential transcriptomes during formation of an epigenetic memory in Norway spruce embryogenesis. Tree Genetics and Genomes 10: 355-366.
    • (2014) Tree Genetics and Genomes , vol.10 , pp. 355-366
    • Yakovlev, I.A.1    Lee, Y.2    Rotter, B.3    Olsen, J.E.4    Skroppa, T.5    Johnsen, O.6    Fossdal, C.G.7
  • 71
    • 84892987555 scopus 로고    scopus 로고
    • Analysis of genome-wide changes in the translatome of Arabidopsis seedlings subjected to heat stress
    • (art. e71425)
    • Yangueez E, Castro-Sanz AB, Fernandez-Bautista N, Oliveros JC, Castellano MM. 2013. Analysis of genome-wide changes in the translatome of Arabidopsis seedlings subjected to heat stress. PLOS ONE 8 (art. e71425).
    • (2013) PLOS ONE , vol.8
    • Yangueez, E.1    Castro-Sanz, A.B.2    Fernandez-Bautista, N.3    Oliveros, J.C.4    Castellano, M.M.5


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