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Volumn 47, Issue 1, 2015, Pages

Upweighting rare favourable alleles increases long-term genetic gain in genomic selection programs

Author keywords

[No Author keywords available]

Indexed keywords

ALLELE; GENETIC ANALYSIS; GENETIC MARKER; GENETIC VARIATION; GENOMICS; LONG-TERM CHANGE; SELECTION;

EID: 84928263080     PISSN: 0999193X     EISSN: 12979686     Source Type: Journal    
DOI: 10.1186/s12711-015-0101-0     Document Type: Article
Times cited : (28)

References (37)
  • 1
    • 77952749326 scopus 로고    scopus 로고
    • Sensitivity of methods for estimating breeding values using genetic markers to the number of QTL and distribution of QTL variance
    • 2851578 20302681
    • Coster A, Bastiaansen JWM, Calus MPL, van Arendonk JAM, Bovenhuis H. Sensitivity of methods for estimating breeding values using genetic markers to the number of QTL and distribution of QTL variance. Genet Sel Evol. 2010;42:9.
    • (2010) Genet Sel Evol , vol.42 , pp. 9
    • Coster, A.1    Bastiaansen, J.W.M.2    Calus, M.P.L.3    Van Arendonk, J.A.M.4    Bovenhuis, H.5
  • 2
    • 84884710353 scopus 로고    scopus 로고
    • Accuracy of genomic prediction using different models and response variables in the Nordic Red cattle population
    • 1:CAS:528:DC%2BC3sXhsFOgs7%2FF 24074170
    • Gao H, Lund MS, Zhang Y, Su G. Accuracy of genomic prediction using different models and response variables in the Nordic Red cattle population. J Anim Breed Genet. 2013;130:333-40.
    • (2013) J Anim Breed Genet , vol.130 , pp. 333-340
    • Gao, H.1    Lund, M.S.2    Zhang, Y.3    Su, G.4
  • 3
    • 84859625578 scopus 로고    scopus 로고
    • Accuracy of genomic selection methods in a standard data set of loblolly pine (Pinus taeda L.)
    • 3316659 22271763
    • Resende MFR, Munoz P, Resende MDV, Garrick DJ, Fernando RL, Davis JM, et al. Accuracy of genomic selection methods in a standard data set of loblolly pine (Pinus taeda L.). Genetics. 2012;190:1503-10.
    • (2012) Genetics , vol.190 , pp. 1503-1510
    • Resende, M.F.R.1    Munoz, P.2    Resende, M.D.V.3    Garrick, D.J.4    Fernando, R.L.5    Davis, J.M.6
  • 4
    • 84883222798 scopus 로고    scopus 로고
    • Resource allocation for maximizing prediction accuracy and genetic gain of genomic selection in plant breeding: A simulation experiment
    • Lorenz AJ. Resource allocation for maximizing prediction accuracy and genetic gain of genomic selection in plant breeding: A simulation experiment. G3 (Bethesda) 2013;3:481-91.
    • (2013) G3 (Bethesda) , vol.3 , pp. 481-491
    • Lorenz, A.J.1
  • 5
    • 84879743015 scopus 로고    scopus 로고
    • Priors in whole-genome regression: The Bayesian alphabet returns
    • 3697965 1:CAS:528:DC%2BC3sXht1ChsrnN 23636739
    • Gianola D. Priors in whole-genome regression: the bayesian alphabet returns. Genetics. 2013;194:573-96.
    • (2013) Genetics , vol.194 , pp. 573-596
    • Gianola, D.1
  • 6
    • 84855650747 scopus 로고    scopus 로고
    • Long-term genomic improvement - New challenges for population genetics
    • 1:STN:280:DC%2BC387isl2qsg%3D%3D 22225578
    • Bijma P. Long-term genomic improvement - new challenges for population genetics. J Anim Breed Genet. 2012;129:1-2.
    • (2012) J Anim Breed Genet , vol.129 , pp. 1-2
    • Bijma, P.1
  • 7
    • 84905586640 scopus 로고    scopus 로고
    • Invited review: Animal-breeding schemes using genomic information need breeding plans designed to maximise long-term genetic gains
    • Henryon M, Berg P, Sorensen AC. Invited review: Animal-breeding schemes using genomic information need breeding plans designed to maximise long-term genetic gains. Livest Sci. 2014;166:38-47.
    • (2014) Livest Sci , vol.166 , pp. 38-47
    • Henryon, M.1    Berg, P.2    Sorensen, A.C.3
  • 9
    • 0031853913 scopus 로고    scopus 로고
    • Optimizing selection for quantitative traits with information on an identified locus in outbred populations
    • Dekkers JCM, van Arendonk JAM. Optimizing selection for quantitative traits with information on an identified locus in outbred populations. Genet Res. 1998;71:257-75.
    • (1998) Genet Res , vol.71 , pp. 257-275
    • Dekkers, J.C.M.1    Van Arendonk, J.A.M.2
  • 10
    • 0035983147 scopus 로고    scopus 로고
    • A method to optimize selection on multiple identified quantitative trait loci
    • 2705425 1:CAS:528:DC%2BD38Xmt1ansbY%3D 12081805
    • Chakraborty R, Moreau L, Dekkers JCM. A method to optimize selection on multiple identified quantitative trait loci. Genet Sel Evol. 2002;34:145-70.
    • (2002) Genet Sel Evol , vol.34 , pp. 145-170
    • Chakraborty, R.1    Moreau, L.2    Dekkers, J.C.M.3
  • 11
    • 80053581954 scopus 로고    scopus 로고
    • Optimal selection for multiple quantitative trait loci and contributions of individuals using genetic algorithm
    • 3334203 22577484
    • Tang G, Lin P, Xu C, Xue J, Liu T, Wang Z, et al. Optimal selection for multiple quantitative trait loci and contributions of individuals using genetic algorithm. Livest Sci. 2011;141:242-51.
    • (2011) Livest Sci , vol.141 , pp. 242-251
    • Tang, G.1    Lin, P.2    Xu, C.3    Xue, J.4    Liu, T.5    Wang, Z.6
  • 12
    • 67349287476 scopus 로고    scopus 로고
    • Genomic selection: Prediction of accuracy and maximisation of long term response
    • 18704696
    • Goddard M. Genomic selection: prediction of accuracy and maximisation of long term response. Genetica. 2009;136:245-57.
    • (2009) Genetica , vol.136 , pp. 245-257
    • Goddard, M.1
  • 13
    • 78049395924 scopus 로고    scopus 로고
    • Dynamics of long-term genomic selection
    • 2936280 20712894
    • Jannink JL. Dynamics of long-term genomic selection. Genet Sel Evol. 2010;42:35.
    • (2010) Genet Sel Evol , vol.42 , pp. 35
    • Jannink, J.L.1
  • 14
    • 0027951123 scopus 로고
    • Increasing long-term response to selection
    • 2709147
    • Wray NR, Goddard ME. Increasing long-term response to selection. Genet Sel Evol. 1994;26:431-51.
    • (1994) Genet Sel Evol , vol.26 , pp. 431-451
    • Wray, N.R.1    Goddard, M.E.2
  • 16
    • 67849130524 scopus 로고    scopus 로고
    • Predicting quantitative traits with regression models for dense molecular markers and pedigree
    • de los Campos G, Naya H, Gianola D, Crossa J, Legarra A, Manfredi E, et al. Predicting quantitative traits with regression models for dense molecular markers and pedigree. Genetics 2009;182:375-85.
    • (2009) Genetics , vol.182 , pp. 375-385
    • De Los Campos, G.1    Naya, H.2    Gianola, D.3    Crossa, J.4    Legarra, A.5    Manfredi, E.6    Al, E.7
  • 17
    • 84866328184 scopus 로고    scopus 로고
    • Genome-enabled prediction of genetic values using radial basis function neural networks
    • 3405257 1:STN:280:DC%2BC38nht1ejtA%3D%3D 22566067
    • Gonzalez-Camacho JM, de los Campos G, Perez P, Gianola D, Cairns JE, Mahuku G, et al. Genome-enabled prediction of genetic values using radial basis function neural networks. Theor Appl Genet. 2012;125:759-71.
    • (2012) Theor Appl Genet , vol.125 , pp. 759-771
    • Gonzalez-Camacho, J.M.1    De Los Campos, G.2    Perez, P.3    Gianola, D.4    Cairns, J.E.5    Mahuku, G.6
  • 18
    • 49549105778 scopus 로고    scopus 로고
    • The Bayesian Lasso
    • 1:CAS:528:DC%2BD1cXptlansL8%3D
    • Park T, Casella G. The Bayesian Lasso. J Am Stat Assoc. 2008;103:681-6.
    • (2008) J Am Stat Assoc , vol.103 , pp. 681-686
    • Park, T.1    Casella, G.2
  • 20
    • 0034957069 scopus 로고    scopus 로고
    • The distribution of the effects of genes affecting quantitative traits in livestock
    • 2705405 1:CAS:528:DC%2BD3MXltFWksL4%3D 11403745
    • Hayes B, Goddard ME. The distribution of the effects of genes affecting quantitative traits in livestock. Genet Sel Evol. 2001;33:209-29.
    • (2001) Genet Sel Evol , vol.33 , pp. 209-229
    • Hayes, B.1    Goddard, M.E.2
  • 21
    • 84893174042 scopus 로고    scopus 로고
    • Allele frequency changes due to hitch-hiking in genomic selection programs
    • 3942192 24495634
    • Liu H, Sorensen AC, Meuwissen THE, Berg P. Allele frequency changes due to hitch-hiking in genomic selection programs. Genet Sel Evol. 2014;46:8.
    • (2014) Genet Sel Evol , vol.46 , pp. 8
    • Liu, H.1    Sorensen, A.C.2    Meuwissen, T.H.E.3    Berg, P.4
  • 23
    • 0027029808 scopus 로고
    • Computing inbreeding coefficients in large populations
    • 2711146
    • Meuwissen THE, Luo Z. Computing inbreeding coefficients in large populations. Genet Sel Evol. 1992;24:305-13.
    • (1992) Genet Sel Evol , vol.24 , pp. 305-313
    • Meuwissen, T.H.E.1    Luo, Z.2
  • 25
    • 77954071525 scopus 로고    scopus 로고
    • Marker-assisted selection reduces expected inbreeding but can result in large effects of hitchhiking
    • 1:STN:280:DC%2BC3cvpsVOitA%3D%3D 20536636
    • Pedersen LD, Sorensen AC, Berg P. Marker-assisted selection reduces expected inbreeding but can result in large effects of hitchhiking. J Anim Breed Genet. 2010;127:189-98.
    • (2010) J Anim Breed Genet , vol.127 , pp. 189-198
    • Pedersen, L.D.1    Sorensen, A.C.2    Berg, P.3
  • 26
    • 84863334651 scopus 로고    scopus 로고
    • Genomic breeding value prediction and QTL mapping of QTLMAS2011 data using Bayesian and GBLUP methods
    • 3363161 1:CAS:528:DC%2BC38XnvFGrtL8%3D 22640755
    • Zeng J, Pszczola M, Wolc A, Strabel T, Fernando RL, Garrick DJ, et al. Genomic breeding value prediction and QTL mapping of QTLMAS2011 data using Bayesian and GBLUP methods. BMC Proc. 2012;6:S7.
    • (2012) BMC Proc , vol.6 , pp. S7
    • Zeng, J.1    Pszczola, M.2    Wolc, A.3    Strabel, T.4    Fernando, R.L.5    Garrick, D.J.6
  • 27
    • 84863564102 scopus 로고    scopus 로고
    • Long-term response to genomic selection: Effects of estimation method and reference population structure for different genetic architectures
    • 3305523 22273519
    • Bastiaansen JWM, Coster A, Calus MPL, van Arendonk JAM, Bovenhuis H. Long-term response to genomic selection: effects of estimation method and reference population structure for different genetic architectures. Genet Sel Evol. 2012;44:3.
    • (2012) Genet Sel Evol , vol.44 , pp. 3
    • Bastiaansen, J.W.M.1    Coster, A.2    Calus, M.P.L.3    Van Arendonk, J.A.M.4    Bovenhuis, H.5
  • 28
    • 80054754496 scopus 로고    scopus 로고
    • Accuracy of genomic breeding values for residual feed intake in crossbred beef cattle
    • 1:CAS:528:DC%2BC3MXhsVSqsr%2FF 21642493
    • Mujibi FD, Nkrumah JD, Durunna ON, Stothard P, Mah J, Wang Z, et al. Accuracy of genomic breeding values for residual feed intake in crossbred beef cattle. J Anim Sci. 2011;89:3353-61.
    • (2011) J Anim Sci , vol.89 , pp. 3353-3361
    • Mujibi, F.D.1    Nkrumah, J.D.2    Durunna, O.N.3    Stothard, P.4    Mah, J.5    Wang, Z.6
  • 29
    • 37249083895 scopus 로고    scopus 로고
    • The impact of genetic relationship information on genome-assisted breeding values
    • 2219482 1:CAS:528:DC%2BD1cXhtlCjsb4%3D 18073436
    • Habier D, Fernando RL, Dekkers JCM. The impact of genetic relationship information on genome-assisted breeding values. Genetics. 2007;177:2389-97.
    • (2007) Genetics , vol.177 , pp. 2389-2397
    • Habier, D.1    Fernando, R.L.2    Dekkers, J.C.M.3
  • 30
    • 0000410470 scopus 로고
    • A theory of limits in artificial selection
    • Robertson A. A theory of limits in artificial selection. Proc R Soc Ser B-Bio. 1960;153:235-49.
    • (1960) Proc R Soc ser B-Bio , vol.153 , pp. 235-249
    • Robertson, A.1
  • 31
    • 2442520355 scopus 로고    scopus 로고
    • Maximizing genetic gain over multiple generations with quantitative trait locus selection and control of inbreeding
    • 1:CAS:528:DC%2BD2cXjs1Grurw%3D 15144069
    • Villanueva B, Dekkers JC, Woolliams JA, Settar P. Maximizing genetic gain over multiple generations with quantitative trait locus selection and control of inbreeding. J Anim Sci. 2004;82:1305-14.
    • (2004) J Anim Sci , vol.82 , pp. 1305-1314
    • Villanueva, B.1    Dekkers, J.C.2    Woolliams, J.A.3    Settar, P.4
  • 33
    • 0035045051 scopus 로고    scopus 로고
    • Prediction of total genetic value using genome-wide dense marker maps
    • 1461589 1:CAS:528:DC%2BD3MXjsFemtbY%3D 11290733
    • Meuwissen THE, Hayes BJ, Goddard ME. Prediction of total genetic value using genome-wide dense marker maps. Genetics. 2001;157:1819-29.
    • (2001) Genetics , vol.157 , pp. 1819-1829
    • Meuwissen, T.H.E.1    Hayes, B.J.2    Goddard, M.E.3
  • 34
    • 34248994603 scopus 로고    scopus 로고
    • The effect of non-additive genetic interactions on selection in multi-locus genetic models
    • 1:CAS:528:DC%2BD2sXlsFOitbg%3D 17327874
    • Hallander J, Waldmann P. The effect of non-additive genetic interactions on selection in multi-locus genetic models. Heredity. 2007;98:349-59.
    • (2007) Heredity , vol.98 , pp. 349-359
    • Hallander, J.1    Waldmann, P.2
  • 35
    • 84894104465 scopus 로고    scopus 로고
    • Selection with inbreeding control in simulated young bull schemes for local dairy cattle breeds
    • 1:CAS:528:DC%2BC2cXis1Cntbs%3D 24440254
    • Gandini G, Stella A, Del Corvo M, Jansen GB. Selection with inbreeding control in simulated young bull schemes for local dairy cattle breeds. J Dairy Sci. 2014;97:1790-8.
    • (2014) J Dairy Sci , vol.97 , pp. 1790-1798
    • Gandini, G.1    Stella, A.2    Del Corvo, M.3    Jansen, G.B.4
  • 36
    • 84855386922 scopus 로고    scopus 로고
    • There is room for selection in a small local pig breed when using optimum contribution selection: A simulation study
    • 1:CAS:528:DC%2BC38XnvFOjtA%3D%3D 21841085
    • Gourdine JL, Sorensen AC, Rydhmer L. There is room for selection in a small local pig breed when using optimum contribution selection: a simulation study. J Anim Sci. 2012;90:76-84.
    • (2012) J Anim Sci , vol.90 , pp. 76-84
    • Gourdine, J.L.1    Sorensen, A.C.2    Rydhmer, L.3
  • 37
    • 79959526883 scopus 로고    scopus 로고
    • Optimum contribution selection using traditional best linear unbiased prediction and genomic breeding values in aquaculture breeding schemes
    • 1:CAS:528:DC%2BC3MXjtlSmtrk%3D 21036937
    • Nielsen HM, Sonesson AK, Meuwissen TH. Optimum contribution selection using traditional best linear unbiased prediction and genomic breeding values in aquaculture breeding schemes. J Anim Sci. 2011;89:630-8.
    • (2011) J Anim Sci , vol.89 , pp. 630-638
    • Nielsen, H.M.1    Sonesson, A.K.2    Meuwissen, T.H.3


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