Modification of atmospheric sand-associated bacterial communities during Asian sandstorms in China and South Korea

Heredity

Volumn 114, Issue 5, 2015, Pages 460-467

  An, S ^a,b   Sin, H H ^a   DuBow, M S ^a  

^a UNIVERSITÉ PARIS SACLAY   (France)

^b NONE   (China)

Author keywords

[No Author keywords available]

Indexed keywords

AEROSOL COMPOSITION; CLASSIFICATION; DESERT; DNA; MICROBIAL COMMUNITY; POPULATION STRUCTURE; SPECIES DIVERSITY; URBAN ECOSYSTEM;

CHINA; SOUTH KOREA;

ACTINOBACTERIA; BACTERIA (MICROORGANISMS); FIRMICUTES; PROTEOBACTERIA;

BACTERIAL DNA; RNA 16S; SILICON DIOXIDE;

BACTERIUM; BAYES THEOREM; CHINA; CLASSIFICATION; DNA SEQUENCE; ENVIRONMENTAL MONITORING; GENETICS; ISOLATION AND PURIFICATION; MICROBIOLOGY; SOUTH KOREA; WIND;

AIR MICROBIOLOGY; BACTERIA; BAYES THEOREM; CHINA; DNA, BACTERIAL; ENVIRONMENTAL MONITORING; REPUBLIC OF KOREA; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SILICON DIOXIDE; WIND;

EID: 84928208296     PISSN: 0018067X     EISSN: 13652540     Source Type: Journal    
DOI: 10.1038/hdy.2014.102     Document Type: Article

References (40)

1. Amann RI, Ludwig W, Schleifer KH (1995). Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 59: 143-169.
2. An S, Couteau C, Luo F, Neveu J, DuBow MS (2013). Bacterial diversity of surface sand samples from the Gobi and Taklamaken deserts. Microb Ecol 66: 850-860.
3. Bell ML, Levy JK, Lin Z (2008). The effect of sandstorms and air pollution on cause-specific hospital admissions in Taipei, Taiwan. Occup Environ Med 65: 104-111.
4. Bishop JK, Davis RE, Sherman JT (2002). Robotic observations of dust storm enhancement of carbon biomass in the North Pacific. Science 298: 817-821.
5. Bowers RM, McLetchie S, Knight R, Fierer N (2011). Spatial variability in airborne bacterial communities across land-use types and their relationship to the bacterial communities of potential source environments. ISME J 5: 601-612.
6. Bowers RM, McCubbin IB, Hallar AG, Fierer N (2012). Seasonal variability in airborne bacterial communities at a high-elevation site. Atmos Environ 50: 41-49.
7. Burrows SM, Butler T, Jockel P, Tost H, Kerkweg A, Poschl U et al. (2009). Bacteria in the global atmosphere - Part 2: Modeling of emissions and transport between different ecosystems. Atmos Chem Phys 9: 9281-9297.
8. Cao C, Jiang W, Wang B, Fang J, Lang J, Tian G et al. (2014). Inhalable microorganisms in Beijing's PM2.5 and PM10 pollutants during a severe smog event. Environ Sci Technol 48: 1499-1507.
9. Chanal A, Chapon V, Benzerara K, Barakat M, Christen R, Achouak W et al. (2006). The desert of Tataouine: an extreme environment that hosts a wide diversity of microorganisms and radiotolerant bacteria. Environ Microbiol 8: 514-525.
10. Chessel D, Dufour AB, Thioulouse J (2004). The ade4 package-I: one-table methods. R News 4: 5-10.
11. Chien LC, Yang CH, Yu HL (2012). Estimated effects of Asian dust storms on spatiotemporal distributions of clinic visits for respiratory diseases in Taipei children (Taiwan). Environ Health Perspect 120: 1215-1220.
12. Choi DS, Park YK, Oh SK, Yoon HJ, Kim JC, Seo WJ et al. (1997). Distribution of airborne microorganisms in yellow sands of Korea. J Microbiol 35: 1-9.
13. Fahlgren C, Hagstrom A, Nilsson D, Zweifel UL (2010). Annual variations in the diversity, viability, and origin of airborne bacteria. Appl Environ Microbiol 76: 3015-3025.
14. Giongo A, Crabb DB, Davis-Richardson AG, Chauliac D, Mobberley JM, Gano KA et al. (2010). PANGEA: pipeline for analysis of next generation amplicons. ISME J 4: 852-861.
15. Gorbushina AA, Kort R, Schulte A, Lazarus D, Schnetger B, Brumsack HJ et al. (2007). Life in Darwin's dust: intercontinental transport and survival of microbes in the nineteenth century. Environ Microbiol 9: 2911-2922.
16. Griffin DW, Kellogg CA, Garrison VH, Lisle JT, Borden TC, Shinn EA (2003). Atmospheric microbiology in the northern Caribbean during African dust events. Aerobiologia 19: 143-157.
17. Griffin DW (2007). Atmospheric movement of microorganisms in clouds of desert dust and implications for human health. Clin Microbiol Rev 20: 459-477.
18. Hamady M, Walker JJ, Harris JK, Gold NJ, Knight R (2008). Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex. Nat Methods 5: 235-237.
19. Hwang SS, Cho SH, Kwon HJ (2005). Effects of the severe Asian dust events on daily mortality during the spring of 2002, in Seoul, Korea. J Prev Med Public Health 38: 197-202.
20. Iwasaka Y, Shi GY, Yamada M, Kobayashi F, Kakikawa M, Maki T et al. (2009). Mixture of Kosa (Asian dust) and bioaerosols detected in the atmosphere over the Kosa particles source regions with balloon-borne measurements: possibility of long-range transport. Air Qual Atmos Health 2: 29-38.
21. Jeon EM, Kim HJ, Jeong K, Kim JH, Kim MY, Kim YP et al. (2010). Impact of Asian dust events on airborne bacterial community assessed by molecular analyses. Atmos Environ 45: 4313-4321.
22. Kellogg CA, Griffin DW (2006). Aerobiology and the global transport of desert dust. Trends Ecol Evol 21: 638-644.
23. Kwon HJ, Cho SH, Chun Y, Lagarde F, Pershagen G. (2002). Effects of the Asian dust events on daily mortality in Seoul, Korea. Environ Res 90: 1-5.
24. La Scola B, Birtles RJ, Mallet MN, Raoult D (1998). Massilia timonae gen. nov., sp. nov., isolated from blood of an immunocompromised patient with cerebellar lesions. J Clin Microbiol 36: 2847-2852.
25. Larsson BM, Larsson K, Malmberg P, Palmberg L (1999). Gram positive bacteria induce IL-6 and IL-8 production in human alveolar macrophages and epithelial cells. Inflammation 23: 217-230.
26. Lee JT, Son JY, Cho YS (2007). A comparison of mortality related to urban air particles between periods with Asian dust days and without Asian dust days in Seoul, Korea, 2000-2004. Environ Res 105: 409-413.
27. Lee S, Choi B, Yi SM, Ko G (2009). Characterization of microbial community during Asian dust events in Korea. Sci Total Environ 407: 5308-5314.
28. Liu Z, Lozupone C, Hamady M, Bushman FD, Knight R (2007). Short pyrosequencing reads suffice for accurate microbial community analysis. Nucleic Acids Res 35: e120.
29. Maron PA, Lejona DPH, Carvalho E, Bizet K, Lemanceau P, Ranjard L et al. (2005). Assessing genetic structure and diversity of airborne bacterial communities by DNA fingerprinting and 16S rDNA clone library. Atmos Environ 39: 3687-3695.
30. Nishimura Y, Kenzaka T, Sueyoshi A, Li P, Fujiyama H, Baba T et al. (2010). Similarity of bacterial community structure between Asian dust and its sources determined by rRNA gene-targeted approaches. Microbes Environ 25: 22-27.
31. Prestel E, Regeard C, Salamitou S, Neveu J, DuBow MS (2013). The bacteria and bacteriophages from a Mesquite Flats site of the Death Valley desert. Antonie van Leeuwenhoek 103: 1329-1341.
32. Prospero JM (1999). Long-range transport of mineral dust in the global atmosphere: impact of African dust on the environment of the southeastern United States. Proc Natl Acad Sci USA 96: 3396-3403.
33. Prospero JM, Lamb PJ (2003). African droughts and dust transport to the Caribbean: climate change implications. Science 302: 1024-1027.
34. Shinn EA, Griffin DW, Seba DB (2003). Atmospheric transport of mold spores in clouds of desert dust. Arch Environ Health 58: 498-504.
35. Tang Y, Wang Y, Ji S, Zhang K, Dai J, Zhang L et al. (2010). Pedobacter xinjiangensis sp. nov., from desert, Xinjiang. J Microbiol Biotechnol 20: 397-402.
36. Tolias PP, DuBow MS (1986). The overproduction and characterization of the bacteriophage Mu regulatory DNA-binding protein Ner. Virol 148: 298-311.
37. Van Craenenbroeck AH, Camps K, Zachee P, Wu KL (2011). Massilia timonae infection presenting as generalized lymphadenopathy in a man returning to Belgium from Nigeria. J Clin Microbiol 49: 2763-2765.
38. Wang Q, Garrity GM, Tiedje JM, Cole JR (2007). Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73: 5261-5267.
39. Yang CY, Tsai SS, Chang CC, Ho SC (2005). Effects of Asian dust storm events on daily admissions for asthma in Taipei, Taiwan. Inhal Toxicol 17: 817-821.
40. Zhou Y, Wang X, Liu H, Zhang KY, Zhang YQ, Lai R et al. (2007). Pontibacter akesuensis sp. nov., isolated from a desert soil in China. Int J Syst Evol Microbiol 57: 321-325.