The impact of within-herd genetic variation upon inferred transmission trees for foot-and-mouth disease virus

Infection, Genetics and Evolution

Volumn 32, Issue , 2015, Pages 440-448

  Valdazo González, Begoña ^a   Kim, Jan T ^a   Soubeyrand, Samuel ^b   Wadsworth, Jemma ^a   Knowles, Nick J ^a   Haydon, Daniel T ^c   King, Donald P ^a  

^a INSTITUTE FOR ANIMAL HEALTH   (United Kingdom)

^b INRA   (France)

^c UNIVERSITY OF GLASGOW   (United Kingdom)

Author keywords

Foot and mouth disease virus; Full genome; Transmission trees; Within herd genetic variation

Indexed keywords

AMINO ACID SUBSTITUTION; ARTICLE; CONTROLLED STUDY; COST EFFECTIVENESS ANALYSIS; FOOT AND MOUTH DISEASE VIRUS; GENE SEQUENCE; GENETIC VARIABILITY; HERD; MOLECULAR CLOCK; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; PARSIMONY ANALYSIS; PHYLOGENETIC TREE; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; UNITED KINGDOM; VIRUS GENOME; VIRUS TRANSMISSION; ANIMAL; BAYES THEOREM; BOVINE; CATTLE DISEASES; CLASSIFICATION; CLUSTER ANALYSIS; EPIDEMIC; FOOT AND MOUTH DISEASE; GENETIC VARIATION; GENETICS; GREAT BRITAIN; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; TRANSMISSION; VETERINARY; VIROLOGY;

ANIMALIA; FOOT-AND-MOUTH DISEASE VIRUS; RNA VIRUSES;

ANIMALS; BASE SEQUENCE; BAYES THEOREM; CATTLE; CATTLE DISEASES; CLUSTER ANALYSIS; DISEASE OUTBREAKS; FOOT-AND-MOUTH DISEASE; FOOT-AND-MOUTH DISEASE VIRUS; GENETIC VARIATION; GENOME, VIRAL; GREAT BRITAIN; MOLECULAR SEQUENCE DATA;

EID: 84928155535     PISSN: 15671348     EISSN: 15677257     Source Type: Journal    
DOI: 10.1016/j.meegid.2015.03.032     Document Type: Article

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