An imaging and analysis toolset for the study of Caenorhabditis elegans neurodevelopment

Progress in Biomedical Optics and Imaging - Proceedings of SPIE

Volumn 9334, Issue , 2015, Pages

  Christensen, Ryan ^a   Bokinsky, Alexandra ^b   Santella, Anthony ^c   Wu, Yicong ^a   Marquina, Javier ^d   Kovacevic, Ismar ^c   Kumar, Abhishek ^a,d   Winter, Peter ^a   McCreedy, Evan ^b   Mohler, William ^e   Bao, Zhirong ^c   Colón Ramos, Daniel ^d   Shroff, Hari ^a  

^a NATIONAL INSTITUTE OF BIOMEDICAL IMAGING AND BIOENGINEERING   (United States)

^b NATIONAL INSTITUTES OF HEALTH   (United States)

^c MEMORIAL SLOAN KETTERING CANCER CENTER   (United States)

^d YALE UNIVERSITY SCHOOL OF MEDICINE   (United States)

^e UNIVERSITY OF CONNECTICUT HEALTH CENTER   (United States)

Author keywords

Caenorhabditis elegans; light sheet imaging; neurodevelopment

Indexed keywords

ALGORITHMS; CELL PROLIFERATION;

CAENORHABDITIS ELEGANS; CELL DIVISIONS; DATA COMPARISONS; ISOTROPIC RESOLUTION; LIGHT SHEET; MICROSCOPE SYSTEMS; NEURODEVELOPMENT; TOOLSETS;

BIOLOGY;

EID: 84928151920     PISSN: 16057422     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1117/12.2082394     Document Type: Conference Paper

References (13)

1. O'Donnell, M., Chance, R.K., Bashaw, G.J., "Axon growth and guidance: receptor regulation and signal transduction," Annu. Rev. Neurosci. 32, 383-412 (2009).
2. Tessier-Lavinge, M., and Goodman, C.S., "The molecular biology of axon guidance," Science 274(5290), 1123-1133 (1996).
3. Chilton, J.K. "Molecular mechanisms of axon guidance," Dev. Biol. 292(1), 13-24 (2006).
4. Herculano-Houzel, S., Mota, B., Lent, R., "Cellular scaling rules for rodent brains," Proc. Natl. Acad. Sci. U.S.A. 103(32), 12138-12143 (2006)
5. Azevedo, F.A.C., Carvalho, L.R.B., Grinberg, L.T., Farfel, J.M., Ferretti, R.E.L., Leite, R.E.P., Jacob Filho, W., Lent, R., Herculano-Houzel, S., "Equal numbers of neuronal and nonneuronal cells make the human brain an isometrically scaled-up primate brain," J. Comp. Neurol. 513, 532-541 (2009)
6. White, J.G., Southgate, E., Thomson, J.N., Brenner, S., "The structure of the nervous system of the nematode Caenorhabditis elegans," Phil. Trans. R. Soc. Lond. B. 314, 1-340 (1986)
7. Sulston, J.E., "Neuronal cell lineages in the nematode Caenorhabditis elegans," Cold Spring Harb. Symp. Quant. Biol. 48(2), 443-452 (1983)
8. Sulston, J.E., Schierenberg, E., White, J.G., Thomson, J.N., "The embryonic cell lineage of the nematode Caenorhabditis elegans," Dev. Biol. 100, 64-119 (1983)
9. Bao, Z., and Murray, J.I., "Mounting of Caenorhabditis elegans embryos for live imaging of embryogenesis," Cold Spring Harb. Protoc. 2011(9) (2011)
10. Wu, Y., Ghitani, A., Christensen, R., Santella, A., Du, Z., Rondeau, G., Bao, Z., Colón-Ramos, D.A, Shroff, H., "Inverted selective plane illumination microscopy (iSPIM) enables coupled cell identity lineaging and neurodevelopmental imaging in Caenorhabditis elegans," Proc. Natl. Acad, Sci. U.S.A. 108(43), 17708-17713 (2011)
11. Wu, Y., Wawrzusin, P., Senseney, J., Fischer, R.S., Christensen, R., Santella, A., York, A.G., Winter, P.W., Waterman, C.M., Bao, Z., Colón-Ramos, D.A, McAuliffe, M., Shroff, H., "Spatially isotropic four-dimensional imaging with dual-view plane illumination microscopy," Nat. Biotechnol. 31, 1032-1038 (2013)
12. Huisken, J., Stainier, D.Y., "Selective plane illumination microscopy techniques in developmental biology," Development 136(12), 1963-1975 (2009).
13. Kumar, A., Wu, Y., Christensen, R., Chandris, P., Gandler, W., McCreedy, E., Bokinsky, A., Colón-Ramos, D.A., Bao, Z., McAuliffe, M., Rondeau, G., and Shroff, H., "Dual-view plane illumination microscopy for rapid and spatially isotropic imaging," Nat. Protoc. 9, 2555-2573 (2014).