Molecular markers for analyses of intraspecific genetic diversity in the Asian Tiger mosquito, Aedes albopictus

Parasites and Vectors

Volumn 8, Issue 1, 2015, Pages

  Manni, Mosè ^a   Gomulski, Ludvik M ^a   Aketarawong, Nidchaya ^a,b   Tait, Gabriella ^a   Scolari, Francesca ^a   Somboon, Pradya ^c   Guglielmino, Carmela R ^a   Malacrida, Anna R ^a   Gasperi, Giuliano ^a  

^a UNIVERSITY OF PAVIA   (Italy)

^b MAHIDOL UNIVERSITY   (Thailand)

^c CHIANG MAI UNIVERSITY   (Thailand)

Author keywords

Aedes albopictus; Internal transcribed spacer 2 (ITS2); Microsatellites; Mosquito; Population genetics; Simple sequence repeats (SSRs); Virus vectors

Indexed keywords

INTERNAL TRANSCRIBED SPACER 2; MOLECULAR MARKER; RIBOSOME DNA; GENETIC MARKER; RIBOSOMAL SPACER DNA;

ADULT; AEDES ALBOPICTUS; ARTICLE; DNA FLANKING REGION; DNA SEQUENCE; GENETIC EPIGENESIS; GENETIC POLYMORPHISM; GENETIC VARIABILITY; HAPLOTYPE; INSECT GENETICS; INTRASPECIFIC VARIATION; MICROSATELLITE MARKER; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; POPULATION DISTRIBUTION; SIMPLE SEQUENCE REPEAT; SPATIAL ANALYSIS; AEDES; ANIMAL; ANIMAL DISPERSAL; GENETIC MARKER; GENETIC VARIATION; GENETICS; ITALY; MOLECULAR CLONING; REUNION; THAILAND;

AEDES ALBOPICTUS; ARBOVIRUS;

AEDES; ANIMAL DISTRIBUTION; ANIMALS; CLONING, MOLECULAR; DNA, RIBOSOMAL SPACER; GENETIC MARKERS; GENETIC VARIATION; ITALY; REUNION; THAILAND;

EID: 84928041125     PISSN: None     EISSN: 17563305     Source Type: Journal    
DOI: 10.1186/s13071-015-0794-5     Document Type: Article

References (60)

1. Gratz NG. Critical review of the vector status of Aedes albopictus. Med Vet Entomol. 2004;18(3):215-27.
2. Paupy C, Delatte H, Bagny L, Corbel V, Fontenille D. Aedes albopictus, an arbovirus vector: from the darkness to the light. Microbes Infect Inst Pasteur. 2009;11(14-15):1177-85.
3. Lambrechts L, Scott TW, Gubler DJ. Consequences of the expanding global distribution of Aedes albopictus for dengue virus transmission. PLoS Negl Trop Dis. 2010;4(5):e646.
4. Medlock JM, Hansford KM, Schaffner F, Versteirt V, Hendrickx G, Zeller H, et al. A Review of the invasive mosquitoes in Europe: ecology, public health risks, and control options. Vector Borne Zoonotic Dis. 2012;12(6):435-47.
5. Enserink M. A mosquito goes global. Science. 2008;320(5878):864-6.
6. Erickson RA, Hayhoe K, Presley SM, Allen LJS, Long KR, Cox SB. Potential impacts of climate change on the ecology of dengue and its mosquito vector the Asian tiger mosquito (Aedes albopictus). Environ Res Lett. 2012;7:034003.
7. Medley KA, Jenkins DG, Hoffman EA. Human-aided and natural dispersal drive gene flow across the range of an invasive mosquito. Mol Ecol. 2015;24(2):284-95.
8. Tatem AJ, Hay SI, Rogers DJ. Global traffic and disease vector dispersal. Proc Natl Acad Sci. 2006;103(16):6242-7.
9. Benedict MQ, Levine RS, Hawley WA, Lounibos LP. Spread of the tiger: global risk of invasion by the mosquito Aedes albopictus. Vector Borne Zoonotic Dis. 2007;7(1):76-85.
10. Gasperi G, Bellini R, Malacrida AR, Crisanti A, Dottori M, Aksoy S. A new threat looming over the Mediterranean basin: emergence of viral diseases transmitted by Aedes albopictus mosquitoes. PLoS Negl Trop Dis. 2012;6(9):e1836.
11. Schaffner F, Medlock JM, Van Bortel W. Public health significance of invasive mosquitoes in Europe. Clin Microbiol Infect. 2013;19(8):685-92.
12. Delatte H, Desvars A, Bouétard A, Bord S, Gimonneau G, Vourc'h G, et al. Blood-feeding behavior of Aedes albopictus, a vector of Chikungunya on La Réunion. Vector Borne Zoonotic Dis. 2010;10(3):249-58.
13. Poelchau MF, Reynolds JA, Elsik CG, Denlinger DL, Armbruster PA. Deep sequencing reveals complex mechanisms of diapause preparation in the invasive mosquito, Aedes albopictus. Proc Biol Sci. 2013;280(1759):20130143.
14. Lourenço de Oliveira R, Vazeille M, de Filippis AM, Failloux AB. Large genetic differentiation and low variation in vector competence for dengue and yellow fever viruses of Aedes albopictus from Brazil, the United States, and the Cayman Islands. Am J Trop Med Hyg. 2003;69(1):105-14.
15. Tantely ML, Tortosa P, Alout H, Berticat C, Berthomieu A, Rutee A, et al. Insecticide resistance in Culex pipiens quinquefasciatus and Aedes albopictus mosquitoes from La Réunion Island. Insect Biochem Mol Biol. 2010;40(4):317-24.
16. Kawada H, Maekawa Y, Abe M, Ohashi K, Ohba S, Takagi M. Spatial distribution and pyrethroid susceptibility of mosquito larvae collected from catch basins in parks in Nagasaki city, Nagasaki, Japan. Jpn J Infect Dis. 2010;63(1):19-24.
17. Bonizzoni M, Gasperi G, Chen X, James AA. The invasive mosquito species Aedes albopictus: current knowledge and future perspectives. Trends Parasitol. 2013;29(9):460-8.
18. Rao PN, Rai K. Inter and intraspecific variation in nuclear DNA content in Aedes mosquitoes. Heredity. 1987;59(2):253-8.
19. Kumar A, Rai KS. Intraspecific variation in nuclear DNA content among world populations of a mosquito, Aedes albopictus (Skuse). Theor Appl Genet. 1990;79(6):748-52.
20. McLain DK, Rai KS, Fraser MJ. Intraspecific and interspecific variation in the sequence and abundance of highly repeated DNA among mosquitoes of the Aedes albopictus subgroup. Heredity. 1987;58(3):373-81.
21. Black WC, Rai KS. Genome evolution in mosquitoes: intraspecific and interspecific variation in repetitive DNA amounts and organization. Genet Res. 1988;51(3):185-96.
22. Black WC, McLain DK, Rai KS. Patterns of variation in the rDNA cistron within and among World populations of a mosquito, Aedes albopictus (Skuse). Genetics. 1989;121(3):539-50.
23. Gomulski LM, Meiswinkel R, Delécolle J-C, Goffredo M, Gasperi G. Phylogeny of the subgenus Culicoides and related species in Italy, inferred from internal transcribed spacer 2 ribosomal DNA sequences. Med Vet Entomol. 2006;20(2):229-38.
24. Young I, Coleman AW. The advantages of the ITS2 region of the nuclear rDNA cistron for analysis of phylogenetic relationships of insects: a Drosophila example. Mol Phylogenet Evol. 2004;30(1):236-42.
25. Zomuanpuii R, Ringngheti L, Brindha S, Gurusubramanian G, Senthil KN. ITS2 characterization and Anopheles species identification of the subgenus Cellia. Acta Trop. 2013;125(3):309-19.
26. Wörheide G, Hooper JN, Degnan BM. Phylogeography of western Pacific Leucetta "chagosensis" (Porifera: Calcarea) from ribosomal DNA sequences: implications for population history and conservation of the Great Barrier Reef World Heritage Area (Australia). Mol Ecol. 2002;11(9):1753-68.
27. Behbahani A, Dutton TJ, Davies N, Townson H, Sinkins SP. Population differentiation and Wolbachia phylogeny in mosquitoes of the Aedes scutellaris group. Med Vet Entomol. 2005;19(1):66-71.
28. Giessler S, Wolinska J. Capturing the population structure of microparasites: using ITS-sequence data and a pooled DNA approach. Mol Ecol Resour. 2013;13(5):918-28.
29. Müller T, Philippi N, Dandekar T, Schultz J, Wolf M. Distinguishing species. RNA. 2007;13(9):1469-72.
30. Coleman AW. Is there a molecular key to the level of "biological species" in eukaryotes? A DNA guide. Mol Phylogenet Evol. 2009;50(1):197-203.
31. Birungi J, Munstermann LE. Genetic structure of Aedes albopictus (Diptera: Culicidae) populations based on mitochondrial ND5 sequences: evidence for an independent invasion into Brazil and United States. Ann Entomol Soc Am. 2002;95(1):125-32.
32. Mousson L, Dauga C, Garrigues T, Schaffner F, Vazeille M, Failloux AB. Phylogeography of Aedes (Stegomyia) aegypti (L.) and Aedes (Stegomyia) albopictus (Skuse) (Diptera: Culicidae) based on mitochondrial DNA variations. Genet Res. 2005;86(1):1-11.
33. Maia RT, Scarpassa VM, Maciel-Litaiff LH, Tadei WP. Reduced levels of genetic variation in Aedes albopictus (Diptera: Culicidae) from Manaus, Amazonas State, Brazil, based on analysis of the mitochondrial DNA ND5 gene. Genet Mol Res. 2009;8(3):998-1007.
34. Ashfaq M, Hebert PD, Mirza JH, Khan AM, Zafar Y, Mirza MS. Analyzing mosquito (Diptera: culicidae) diversity in Pakistan by DNA barcoding. PLoS One. 2014;9(5):e97268.
35. Kamgang B, Brengues C, Fontenille D, Njiokou F, Simard F, Paupy C. Genetic structure of the tiger mosquito, Aedes albopictus, in Cameroon (Central Africa). PLoS One. 2011;6(5):e20257.
36. Beebe NW, Ambrose L, Hill LA, Davis JB, Hapgood G, Cooper RD, et al. Tracing the tiger: population genetics provides valuable insights into the Aedes (Stegomyia) albopictus invasion of the Australasian Region. PLoS Negl Trop Dis. 2013;7(8):e2361.
37. Minard G, Tran FH, Dubost A, Tran-Van V, Mavingui P, Moro CV. Pyrosequencing 16S rRNA genes of bacteria associated with wild tiger mosquito Aedes albopictus: a pilot study. Front Cell Infect Microbiol. 2014;4:59.
38. Graham RI, Wilson K. Male-killing Wolbachia and mitochondrial selective sweep in a migratory African insect. BMC Evol Biol. 2012;12:204.
39. Mattingly PF. The sub-genus Stegomyia (Diptera: Culicidae) in the Ethiopian Region II. Distribution of species confined to the East and South African sub-region. Bull Br Mus (Natural History) Entomol. 1953;3(1):1-65.
40. Sabatini A, Raineri V, Trovato G, Coluzzi M. Aedes albopictus in Italy and possible diffusion of the species into the Mediterranean area. Parassitologia. 1990;32(3):301-4.
41. Rueda LM. Pictorial keys for the identification of mosquitoes (Diptera: Culicidae) associated with Dengue virus transmission. Zootaxa. 2004;589:1-60.
42. Baruffi L, Damiani G, Guglielmino CR, Bandi C, Malacrida AR, Gasperi G. Polymorphism within and between populations of Ceratitis capitata: comparison between RAPD and multilocus enzyme electrophoresis data. Heredity. 1995;74(4):425-37.
43. De Jong L, Moreau X, Dalia J, Coustau C, Thiéry A. Molecular characterization of the invasive Asian tiger mosquito, Aedes (Stegomyia) albopictus (Diptera: Culicidae) in Corsica. Acta Trop. 2009;112(3):266-9.
44. Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004;32(5):1792-7.
45. Excoffier L, Lischer HE. Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Resour. 2010;10(3):564-7.
46. Dupanloup I, Schneider S, Excoffier L. A simulated annealing approach to define the genetic structure of populations. Mol Ecol. 2002;11(12):2571-81.
47. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. 2011;28(10):2731-9.
48. Martins WS, Lucas DC, Neves KF, Bertioli DJ. WebSat - A web software for microsatellite marker development. Bioinformation. 2009;3(6):282-3.
49. Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 1997;25(17):3389-402.
50. Rozen S, Skaletsky H. Primer3 on the WWW for general users and for biologist programmers. Methods Mol Biol. 2000;132:365-86.
51. Matschiner M, Salzburger W. TANDEM: integrating automated allele binning into genetics and genomics workflows. Bioinformatics. 2009;25(15):1982-3.
52. Peakall R, Smouse PE. GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research - an update. Bioinformatics. 2012;28(19):2537-9.
53. Dieringer D, Schlötterer C. Microsatellite analyser (MSA): a platform independent analysis tool for large microsatellite data sets. Mol Ecol Notes. 2003;3(1):167-9.
54. Rousset F. genepop'007: a complete re-implementation of the genepop software for Windows and Linux. Mol Ecol Resour. 2008;8(1):103-6.
55. Raymond M, Rousset F. GENEPOP (Version 1.2): Population genetics software for exact tests and ecumenicism. J Hered. 1995;86(3):248-9.
56. Guo SW, Thompson EA. Performing the exact test of Hardy-Weinberg proportion for multiple alleles. Biometrics. 1992;48(2):361-72.
57. Kalinowski ST, Taper ML, Marshall TC. Revising how the computer program CERVUS accommodates genotyping error increases success in paternity assignment. Mol Ecol. 2007;16(5):1099-106.
58. Rice WR. Analyzing Tables of Statistical Tests. Evolution. 1989;43(1):223-5.
59. Delatte H, Toty C, Boyer S, Bouetard A, Bastien F, Fontenille D. Evidence of habitat structuring Aedes albopictus populations in Réunion Island. PLoS Negl Trop Dis. 2013;7(3):e2111.
60. Porretta D, Gargani M, Bellini R, Calvitti M, Urbanelli S. Isolation of microsatellite markers in the tiger mosquito Aedes albopictus (Skuse). Mol Ecol Notes. 2006;6(3):880-1.