Improving barley culm robustness for secured crop yield in a changing climate

Journal of Experimental Botany

Volumn 66, Issue 12, 2015, Pages 3499-3509

  Dockter, Christoph ^a   Hansson, Mats ^b  

^a CARLSBERG LABORATORY   (Denmark)

^b LUND UNIVERSITY   (Sweden)

Author keywords

Barley (Hordeum vulgare); Brassinosteroid; Gibberellin; Green Revolution; Lodging; Plant architecture; Short culm

Indexed keywords

ANATOMY AND HISTOLOGY; CLIMATE CHANGE; CROP; FOOD GRAIN; GENETICS; GROWTH, DEVELOPMENT AND AGING; HORDEUM; PHENOTYPE; PLANT GENE;

CLIMATE CHANGE; CROPS, AGRICULTURAL; EDIBLE GRAIN; GENES, PLANT; HORDEUM; PHENOTYPE;

EID: 84928019726     PISSN: 00220957     EISSN: 14602431     Source Type: Journal    
DOI: 10.1093/jxb/eru521     Document Type: Review

References (79)

1. Ahloowalia BS, Maluszynski M, Nichterlein K. 2004. Global impact of mutation-derived varieties. Euphytica 135, 187-204.
2. Ashikari M, Sasaki A, Ueguchi-Tanaka M, et al. 2002. Loss-offunction of a rice gibberellin biosynthetic gene, GA20 oxidase (GA20ox-2), led to the rice "green revolution". Breeding Science 52, 143-150.
3. Badr A, Müller K, Schäfer-Pregl R, El Rabey H, Effgen S, Ibrahim HH, Pozzi C, Rohde W, Salamini F. 2000. On the origin and domestication history of barley (Hordeum vulgare) Molecular Biology and Evolution 17, 499-510.
4. Börner A, Korzun V, Malyshev S, Ivandic V, Graner A. 1999. Molecular mapping of two dwarfing genes differing in their GA response on chromosome 2H of barley. Theoretical and Applied Genetics 99, 670-675.
5. Bouma J. 1967. New varieties of spring barley, "Diamant" in Czechoslovakia. In: Induzierte Mutationen und ihre Nutzung, Erwin Baur Gedächtnisvorlesung IV. Berlin, Germany: Akademie-Verlag.
6. Caierão E. 2006. Effect of induced lodging on grain yield and quality of brewing barley. Crop Breeding and Applied Biotechnology 6, 215-221.
7. Campoli C, Pankin A, Drosse B, Casao CM, Davis SJ, von Korff M. 2013. HvLUX1 is a candidate gene underlying the early maturity 10 locus in barley: phylogeny, diversity, and interactions with the circadian clock and photoperiodic pathways. New Phytologist 199, 1045-1059.
8. Chandler PM, Harding CA, Ashton AR, Mulcair MD, Dixon NE, Mander LN. 2008. Characterization of gibberellin receptor mutants of barley (Hordeum vulgare L.). Molecular Plant 1, 285-294.
9. Chandler PM, Harding CA. 2013 Overgrowth mutants in barley and wheat: new alleles and phenotypes of the Green Revolution DELLA gene. Journal of Experimental Botany 64, 1603-1613.
10. Chandler PM, Marion-Poll A, Ellis M, Gubler F. 2002. Mutants at the Slender1 locus of barley cv Himalaya. Molecular and physiological characterization. Plant Physiology 129, 181-190.
11. Chono M, Honda I, Zeniya H, Yoneyama K, Saisho D, Takeda K, Takatsuto S, Hoshino T, Watanabe Y. 2003. A semidwarf phenotype of barley uzu results from a nucleotide substitution in the gene encoding a putative brassinosteroid receptor. Plant Physiology 133, 1209-1219.
12. Comadran J, Kilian B, Russell J, et al. (2012). Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley. Nature Genetics 44, 1388-1392.
13. Dahleen LS, Van der Wal LJ, Franckowiak JD. 2005. Characterization and molecular mapping of genes determining semidwarfism in barley. Journal of Heredity 96, 654-662.
14. Dai F, Chen ZH, Wang X, et al. 2014. Transcriptome profiling reveals mosaic genomic origins of modern cultivated barley. Proceedings of the National Academy of Sciences, USA 111, 13403-13408.
15. Dai F, Nevo E, Wu D, et al. 2012. Tibet is one of the centers of domestication of cultivated barley. Proceedings of the National Academy of Sciences, USA 109, 16969-16973.
16. Dockter C, Gruszka D, Braumann I, et al. 2014. Induced variations in brassinosteroid genes define barley plant height and sturdiness, and expand the "Green Revolution" genetic toolkit. Plant Physiology doi: 10.1104/pp.114.250738
17. Druka A, Franckowiak J, Lundqvist U, et al. 2011. Genetic dissection of barley morphology and development. Plant Physiology 155, 617-627.
18. Ellis RP, Forster BP, Gordon DC, et al. 2002 Phenotype/genotype associations for yield and salt tolerance in a barley mapping population segregating for two dwarfing genes. Journal of Experimental Botany 53, 1163-1176.
19. Forster BP. 2001. Mutation genetics of salt tolerance in barley: an assessment of Golden Promise and other semi-dwarf mutants. Euphytica 120, 317-328.
20. Franckowiak JD. 1992. Allelism tests among selected semidwarf barleys. Barley Genetic Newsletter 21, 17-23.
21. Franckowiak JD, Lundqvist U. 2012. Description of barley genetic stocks for 2012. Barley Genetic Newsletter 42, 36-792.
22. Gao ZY, Zhao SC, He WM, et al. 2013. Dissecting yield-associated loci in super hybrid rice by resequencing recombinant inbred lines and improving parental genome sequences. Proceedings of the National Academy of Sciences, USA 27, 14492-14497.
23. Gottwald S, Stein N, Börner A, Sasaki T, Graner A. 2004. The gibberellic-acid insensitive dwarfing gene sdw3 of barley is located on chromosome 2HS in a region that shows high colinearity with rice chromosome 7L. Molecular Genetics and Genomics 271, 426-436.
24. Gustafsson, Å. 1936. The different stability of chromosomes and the nature of mitosis. Hereditas 22, 281-335.
25. Gustafsson, Å. 1940. The mutation system of the chlorophyll apparatus. Lunds Universitets Årsskrift, N. F. Avd. Bd. 36, 1-40.
26. Gustafsson Å, Ekman G. 1967. Yield efficiency of the X-ray mutant Svalöf's 'Pallas barley'. Der Züchter 37, 42-46.
27. Gustafsson Å, Ekman G, Dormling I. 1977. Effects of the Pallas gene in barley: phene analysis, overdominance, variability. Hereditas 86, 251-266.
28. Haahr V, von Wettstein D. 1976. Studies of an induced, high-yielding dwarf-mutant of spring barley. In: Gaul H, ed. Barley genetics III. München: Verlag Karl Thiemig, 215-218.
29. Hedden P. 2003. The genes of the Green Revolution. Trends in Genetics 19, 5-9.
30. Hellewell KB, Rasmusson DC, Gallo-Meagher M. 2000. Enhancing yield of semidwarf barley. Crop Science 40, 352-358.
31. Helliwell CA, Chandler PM, Poole A, Dennis ES, Peacock WJ. 2001. The CYP88A cytochrome P450, ent-kaurenoic acid oxidase, catalyzes three steps of the gibberellin biosynthesis pathway. Proceedings of the National Academy of Sciences, USA 98, 2065-2070.
32. Houston K, McKim SM, Comadran J, et al. 2013. Variation of the interaction between alleles of HvAPETALA2 and miR172 determines the density of grains on the barley inflorescence. Proceedings of the National Academy of Sciences, USA 110, 16675-16680.
33. IBSC. 2012. A physical, genetic and functional sequence assembly of the barley genome. Nature 491, 711-716.
34. Jiao Y, Wang Y, Xue D, et al. 2010. Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice. Nature Genetics 42, 541-544.
35. Jia Q, Zhang J, Westcott S, Zhang XQ, Bellgard M, Lance R, Li C. 2009. GA-20 oxidase as a candidate for the semidwarf gene sdw1/denso in barley. Functional and Integrative Genomics 9, 255-262.
36. Jia Q, Zhang XQ, Westcott S, Broughton S, Cakir M, Yang J, Lance R, Li C. 2011. Expression level of a gibberellin 20-oxidase gene is associated with multiple agronomic and quality traits in barley. Theoretical and Applied Genetics 122, 1451-1460.
37. Khush GS. 1984. IRRI breeding program and its worldwide impact on increasing rice production. In: Gstafson JP, ed. Gene manipulation in plant improvement. 16th Stadler Genetics Symposium. New York, USA: Plennum Press, 61-94.
38. Li M, Pan Y, Li AS, Kudrna D, Kleinhofs A. 2002. Fine mapping of a semi-dwarf gene brachytic 1 in barley. Yi Chuan Xue Bao 29, 634-637.
39. Liu H, Bayer M, Druka A, Russell JR, Hackett CA, Poland J, Ramsay L, Hedley PE, Waugh R. 2014. An evaluation of genotyping by sequencing (GBS) to map the Breviaristatum-e (ari-e) locus in cultivated barley. BMC Genomics 15, 104.
40. Lu Z, Yu H, Xiong G, et al. 2013. Genome-wide binding analysis of the transcription activator ideal plant architecture1 reveals a complex network regulating rice plant architecture. The Plant Cell 25, 3743-3759.
41. Lundqvist U. 1992. Mutation research in barley. PhD thesis, The Swedish University of Agricultural Science.
42. Lundqvist U. 2005. The Swedish collection of barley mutants held at the Nordic Genebank. Barley Genetic Newsletter 35, 150-154.
43. Maluszynski M, Szarejko I. 2005. Induced mutations in the green and gene revolutions. In: Tuberosa R, Phillips RL, Gale M. In the wake of the double helix: from the green revolution to the gene revolution. Bologna, Italy: Avenue media, 403-425.
44. Minguet EG, Alabadí D, Blázquez MA. 2014. Gibberellin implication in plant growth and stress responses. In: Tran L-S, Pal S, eds. Phytohormones: A window to metabolism, signaling and biotechnological applications. New York: Springer, 119-161.
45. Miura K, Ikeda M, Matsubara A, Song XJ, Ito M, Asano K, Matsuoka M, Kitano H, Ashikari M. 2010. OsSPL14 promotes panicle branching and higher grain productivity in rice. Nature Genetics 42, 545-549.
46. Murai M, Nagano H, Onishi K, Ogino A, Ichikawa N, Bahadur KCH, Sano Y. 2011. Differentiation in wild-type allele of the sd1 locus concerning culm length between indica and japonica subspecies of Oryza sativa (rice). Hereditas 148, 1-7.
47. Murase K, Hirano Y, Sun TP, Hakoshima T. 2008. Gibberellin-induced DELLA recognition by the gibberellin receptor GID1. Nature 456, 459-463.
48. Pankin A, Campoli C, Dong X, et al. 2014) Mapping-by-sequencing identifies HvPHYTOCHROME C as a candidate gene for the early maturity 5 locus modulating the circadian clock and photoperiodic flowering in barley. Genetics 198, 383-396.
49. Peng J, Richards DE, Hartley NM, et al. 1999. "Green revolution" genes encode mutant gibberellin response modulators. Nature 400, 256-261.
50. Persson G, Hagberg A. 1969. Induced variation in a quantitative character in barley. Morphology and cytogenetics of erectoides mutants. Hereditas 61, 115-178.
51. Porter JR, Semenov MA. 2005. Crop responses to climatic variation. Philosophical Transactions of the Royal Society B 360, 2021-2035.
52. Rajkumara S. 2008. Lodging in cereals. Agricultural Reviews 29, 55-60.
53. Ross JJ, Murfet IC, Reid JB. 1997. Gibberellin mutants. Physiologia Plantarum 100, 550-560.
54. Rutger JN. 1992. Impact of mutation breeding in rice - a review. Mutation Breeding Review 8, 1-24.
55. Saisho D, Tanno K, Chono M, Honda I, Kitano H, Takeda K. 2004. Spontaneous brassinolide-insensitive barley mutants "uzu" adapted to East Asia. Breeding Science 54, 409-416.
56. Sakamoto T, Morinaka Y, Ohnishi T, et al. 2006. Erect leaves caused by brassinosteroid deficiency increase biomass production and grain yield in rice. Nature Biotechnology 24, 105-109.
57. Shahinnia F, Druka A, Franckowiak J, Morgante M, Waugh R, Stein N. 2012. High resolution mapping of Dense spike-ar (dsp.ar) to the genetic centromere of barley chromosome 7H. Theoretical and Applied Genetics 124, 373-384.
58. Spielmeyer W, Ellis MH, Chandler PM. 2002. Semidwarf (sd-1), "green revolution" rice, contains a defective gibberellin 20-oxidase gene. Proceedings of the National Academy of Sciences, USA 99, 9043-9048.
59. Springer N. 2010. Shaping a better rice plant. Nature Genetics 42, 475-476.
60. Stadler, LJ. 1930. Some genetic effects of X-rays in plants. Journal of Heredity 21, 3-19.
61. Sun TP, Gubler F. 2004. Molecular mechanism of gibberellin signaling in plants. Annual Review of Plant Biology 55, 197-233.
62. Takahashi R. 1955. The origin and evolution of cultivated barley. In: Demerec M. Advances in Genetics 7. New York: Academic Press 227-266.
63. Taketa S, Amano S, Tsujino Y, et al. 2008). Barley grain with adhering hulls is controlled by an ERF family transcription factor gene regulating a lipid biosynthesis pathway. Proceedings of the National Academy of Sciences, USA 105, 4062-4067.
64. Taketa S, You T, Sakurai Y, Miyake S, Ichii M. 2011. Molecular mapping of the short awn 2 (lks2) and dense spike 1 (dsp1) genes on barley chromosome 7H. Breeding Science 61, 80-85.
65. Thomas WTB, Powell W, Swanston JS. 1991. The effects of major genes on quantitatively varying characters in barley. 4. The GPert and denso loci and quality characters. Heredity 66, 381-389.
66. Turner A, Beales J, Faure S, Dunford RP, Laurie DA. 2005. The pseudo-response regulator Ppd-H1 provides adaptation to photoperiod in barley. Science 310, 1031-1034.
67. Vestergaard E, Holme Hansen HH, Engel G. 1949. Planteavlen paa Lolland-Falster 1948. Nykøbing, Denmark: Central-trykkeriet.
68. von Wettstein D. 1952. Halmaufbau und Standfestigkeit bei erectoides Mutanten der Gerste. Hereditas 38, 345-366.
69. von Wettstein D. 1954. The pleiotropic effects of erectoides factors and their bearing on the property of straw-stiffness. Acta Agriculturae Scandinavica 4, 491-506.
70. Vriet C, Russinova E, Reuzeau C. 2012. Boosting crop yields with plant steroids. The Plant Cell 24, 842-857.
71. Vu GT, Wicker T, Buchmann JP, Chandler PM, Matsumoto T, Graner A, Stein N. 2010. Fine mapping and syntenic integration of the semi-dwarfing gene sdw3 of barley. Functional and Integrative Genomics 10, 509-521.
72. Wang J, Yang J, Jia Q, Zhu J, Shang Y, Hua W, Zhou M. 2014. A new QTL for plant height in barley (Hordeum vulgare L.) showing no negative effects on grain yield. PLoS ONE 9, e90144.
73. Wen W, Deng Q, Jia H, Wei L, Wei J, Wan H, Yang L, Cao W, Ma Z. 2013. Sequence variations of the partially dominant DELLA gene Rht-B1c in wheat and their functional impacts. Journal of Experimental Botany 64, 3299-3312.
74. Xue DW, Chen MC, Zhou MX, Chen S, Mao Y, Zhang GP. 2008. QTL analysis of flag leaf in barley (Hordeum vulgare L.) for morphological traits and chlorophyll content. Journal of Zhejiang University SCIENCE B 12, 938-943.
75. Yan L, Fu D, Li C, Blechl A, Tranquilli G, Bonafede M, Sanchez A, Valarik M, Yasuda S, Dubcovsky J. 2006. The wheat and barley vernalization gene VRN3 is an orthologue of FT. Proceedings of the National Academy of Sciences, USA 103, 19581-19586.
76. Yu GT, Horsley RD, Zhang B, Franckowiak JD. 2010. A new semidwarfing gene identified by molecular mapping of quantitative trait loci in barley. Theoretical and Applied Genetics 120, 853-861.
77. Zakhrabekova S, Gough SP, Braumann I, et al. 2012. Induced mutations in circadian clock regulator Mat-a facilitated short-season adaptation and range extension in cultivated barley. Proceedings of the National Academy of Sciences, USA 109, 4326-4331.
78. Zhang J, Li Z, Zhang C. 2007. Analysis of dwarfing genes in Zhepi 1 and Aizao 3: Two dwarfing gene donors in barley breeding in China. Canadian Journal of Plant Science 87, 93-96.
79. Zhang J, Zhang W. 2003. Tracing sources of dwarfing genes in barley breeding in China. Euphytica 131, 285-292